Wall clock time and date at job start Tue Mar 31 2020 03:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30844 * 125.89720 * 2 1 4 4 N 1.40084 * 108.20260 * 180.25541 * 3 2 1 5 5 H 0.96994 * 126.03928 * 179.69643 * 4 3 2 6 6 C 1.34950 * 107.92667 * 359.71921 * 4 3 2 7 7 C 1.35320 * 107.74402 * 359.97438 * 6 4 3 8 8 C 1.50704 * 126.03699 * 180.02562 * 7 6 4 9 9 C 1.53112 * 109.52219 * 300.14987 * 8 7 6 10 10 C 1.53171 * 109.20790 * 177.56263 * 9 8 7 11 11 N 1.46839 * 109.55878 * 300.86454 * 10 9 8 12 12 C 1.46900 * 111.00327 * 185.84096 * 11 10 9 13 13 C 1.50701 * 109.47373 * 169.43457 * 12 11 10 14 14 O 1.21292 * 119.99868 * 353.77760 * 13 12 11 15 15 N 1.34775 * 120.00316 * 173.78073 * 13 12 11 16 16 C 1.37097 * 120.00628 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99420 * 359.97438 * 16 15 13 18 18 C 1.38948 * 120.00422 * 180.02562 * 16 15 13 19 19 N 1.31413 * 119.99689 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99896 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47373 * 59.99871 * 20 18 16 22 22 H 1.48498 * 109.46936 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47221 * 299.99420 * 20 18 16 24 24 C 1.46850 * 111.20177 * 61.73948 * 11 10 9 25 25 C 1.53035 * 109.52027 * 298.26122 * 24 11 10 26 26 H 1.09006 * 109.47200 * 270.21379 * 1 2 3 27 27 H 1.08999 * 109.47390 * 30.21352 * 1 2 3 28 28 H 1.08996 * 109.47078 * 150.21223 * 1 2 3 29 29 H 1.08003 * 126.12939 * 179.97438 * 6 4 3 30 30 H 1.09008 * 109.51949 * 180.02562 * 8 7 6 31 31 H 1.09003 * 109.51181 * 297.56621 * 9 8 7 32 32 H 1.09007 * 109.50233 * 57.68639 * 9 8 7 33 33 H 1.09005 * 109.44633 * 180.83499 * 10 9 8 34 34 H 1.08998 * 109.43662 * 60.88748 * 10 9 8 35 35 H 1.09003 * 109.46687 * 289.43072 * 12 11 10 36 36 H 1.08997 * 109.47625 * 49.43151 * 12 11 10 37 37 H 0.97007 * 119.99530 * 359.97438 * 15 13 12 38 38 H 0.97000 * 119.99277 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.46530 * 178.24386 * 24 11 10 40 40 H 1.09005 * 109.45066 * 58.26780 * 24 11 10 41 41 H 1.08996 * 109.50446 * 299.23451 * 25 24 11 42 42 H 1.08998 * 109.53454 * 179.13239 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 -0.0059 5 1 4.3908 1.2079 -0.0114 6 6 3.6142 -0.7153 -0.0032 7 6 2.3271 -1.1330 0.0048 8 6 1.8599 -2.5657 0.0109 9 6 2.3837 -3.2800 -1.2381 10 6 1.9562 -4.7502 -1.1943 11 7 2.4943 -5.3828 0.0166 12 6 2.2210 -6.8261 0.0226 13 6 3.0013 -7.4806 1.1334 14 8 3.7998 -6.8330 1.7769 15 7 2.8119 -8.7857 1.4117 16 6 3.5213 -9.3810 2.4226 17 1 4.2323 -8.8043 2.9956 18 6 3.3264 -10.7266 2.7092 19 7 2.4617 -11.4284 2.0116 20 14 4.2936 -11.5378 4.0861 21 1 3.9987 -10.8513 5.3694 22 1 3.9042 -12.9671 4.1890 23 1 5.7464 -11.4399 3.7948 24 6 1.9681 -4.7426 1.2289 25 6 2.3961 -3.2735 1.2583 26 1 -0.3634 0.0038 1.0277 27 1 -0.3634 0.8880 -0.5171 28 1 -0.3633 -0.8919 -0.5105 29 1 4.4891 -1.3486 -0.0067 30 1 0.7702 -2.5935 0.0164 31 1 1.9710 -2.8058 -2.1286 32 1 3.4717 -3.2183 -1.2632 33 1 2.3397 -5.2660 -2.0747 34 1 0.8680 -4.8113 -1.1830 35 1 1.1554 -6.9934 0.1796 36 1 2.5193 -7.2564 -0.9334 37 1 2.1730 -9.3036 0.8973 38 1 2.3255 -12.3677 2.2120 39 1 2.3604 -5.2528 2.1086 40 1 0.8798 -4.8039 1.2286 41 1 3.4842 -3.2117 1.2723 42 1 1.9928 -2.7942 2.1503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560178046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:31 Heat of formation + Delta-G solvation = 6.844860 kcal Electronic energy + Delta-G solvation = -23178.213138 eV Core-core repulsion = 19772.220833 eV Total energy + Delta-G solvation = -3405.992305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.24186 -40.51939 -39.06151 -35.98319 -35.09284 -33.62473 -33.21029 -31.63805 -30.68927 -28.81528 -28.25089 -26.31932 -24.24434 -23.94295 -22.15249 -20.95777 -20.47192 -19.96769 -19.82775 -18.74212 -17.68164 -16.74662 -16.47617 -16.24069 -15.79029 -15.64506 -15.28563 -15.19374 -15.09977 -14.57936 -14.32176 -14.01753 -13.81234 -13.60410 -13.49932 -13.43839 -13.08041 -12.92926 -12.84831 -12.60119 -12.40748 -12.12411 -12.01875 -12.00547 -11.52327 -11.48905 -11.31754 -11.04661 -10.27084 -10.21053 -9.96260 -9.30449 -9.07953 -8.43513 -5.91763 0.99524 1.41171 1.42491 1.53354 1.81024 2.07727 2.10947 2.30754 2.85895 3.23762 3.45969 3.76848 3.88228 4.03133 4.13158 4.17116 4.34403 4.41994 4.47382 4.48077 4.57217 4.63985 4.66926 4.71866 4.82575 4.88132 4.93705 5.02159 5.09813 5.11375 5.17670 5.22281 5.33587 5.34008 5.43484 5.62981 5.80491 5.96644 6.18551 6.37578 6.48988 6.65243 6.78768 7.16892 7.61545 8.17900 8.73903 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034818 B = 0.002854 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.993995 B = 9808.331414 C =10102.857949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.070 3.930 3 N -0.333 5.333 4 N -0.475 5.475 5 H 0.450 0.550 6 C 0.068 3.932 7 C -0.236 4.236 8 C 0.001 3.999 9 C -0.097 4.097 10 C 0.054 3.946 11 N -0.532 5.532 12 C 0.057 3.943 13 C 0.442 3.558 14 O -0.613 6.613 15 N -0.577 5.577 16 C -0.331 4.331 17 H 0.078 0.922 18 C -0.014 4.014 19 N -0.922 5.922 20 Si 0.991 3.009 21 H -0.272 1.272 22 H -0.271 1.271 23 H -0.272 1.272 24 C 0.058 3.942 25 C -0.092 4.092 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.192 0.808 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.051 0.949 40 H 0.033 0.967 41 H 0.056 0.944 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 18.751 -8.226 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.096 4.096 3 N -0.158 5.158 4 N -0.183 5.183 5 H 0.296 0.704 6 C -0.080 4.080 7 C -0.247 4.247 8 C -0.019 4.019 9 C -0.135 4.135 10 C -0.073 4.073 11 N -0.257 5.257 12 C -0.074 4.074 13 C 0.230 3.770 14 O -0.499 6.499 15 N -0.215 5.215 16 C -0.460 4.460 17 H 0.096 0.904 18 C -0.213 4.213 19 N -0.563 5.563 20 Si 0.815 3.185 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.069 4.069 25 C -0.130 4.130 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.209 0.791 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.229 0.771 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.278 20.325 -7.797 22.015 hybrid contribution -0.050 -1.674 0.615 1.784 sum -3.328 18.651 -7.181 20.261 Atomic orbital electron populations 1.20292 0.85344 1.04090 1.03660 1.22707 0.98119 0.90146 0.98612 1.77188 0.87862 1.23565 1.27221 1.46197 1.07077 1.05763 1.59307 0.70431 1.22723 1.00086 0.85211 0.99940 1.20018 0.92191 0.95782 1.16723 1.19425 0.99987 0.88166 0.94324 1.21615 1.01391 0.92853 0.97619 1.22254 0.97641 0.95666 0.91743 1.61466 1.60448 1.00688 1.03116 1.21727 0.97907 0.89633 0.98134 1.20828 0.86330 0.82287 0.87581 1.90473 1.40404 1.64062 1.54928 1.41957 1.38503 1.08978 1.32073 1.19608 1.20789 0.93865 1.11786 0.90384 1.26009 0.98077 0.96379 1.00865 1.69671 1.35439 1.09623 1.41616 0.85016 0.78320 0.77243 0.77933 1.19759 1.19544 1.19745 1.22064 0.96232 0.95720 0.92921 1.21500 1.00891 0.92581 0.98041 0.89939 0.90544 0.89050 0.79074 0.89957 0.89888 0.91866 0.89857 0.93882 0.91865 0.87218 0.77107 0.91380 0.93095 0.94872 0.92516 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.11 71.24 0.72 -0.41 16 2 C 0.07 1.48 7.22 43.10 0.31 1.79 16 3 N -0.33 -7.69 12.70 -47.38 -0.60 -8.29 16 4 N -0.47 -8.53 7.36 -57.58 -0.42 -8.95 16 5 H 0.45 5.18 8.96 -213.34 -1.91 3.27 16 6 C 0.07 1.25 11.22 83.54 0.94 2.19 16 7 C -0.24 -4.82 4.85 -20.14 -0.10 -4.91 16 8 C 0.00 0.01 2.57 -11.46 -0.03 -0.02 16 9 C -0.10 -1.90 5.29 30.69 0.16 -1.74 16 10 C 0.05 1.22 5.46 86.37 0.47 1.69 16 11 N -0.53 -16.82 4.35 -900.66 -3.92 -20.74 16 12 C 0.06 1.98 5.45 85.56 0.47 2.45 16 13 C 0.44 21.12 7.31 87.66 0.64 21.76 16 14 O -0.61 -33.88 14.28 -3.07 -0.04 -33.92 16 15 N -0.58 -29.80 5.29 -306.99 -1.62 -31.42 16 16 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 17 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 18 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 19 N -0.92 -50.08 13.05 21.66 0.28 -49.79 16 20 Si 0.99 43.18 29.55 68.60 2.03 45.20 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.06 1.87 5.12 86.32 0.44 2.31 16 25 C -0.09 -2.40 5.28 30.65 0.16 -2.24 16 26 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.11 7.24 -2.39 -0.02 1.09 16 29 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.08 1.53 6.92 -2.38 -0.02 1.51 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.34 7.94 -2.38 -0.02 1.32 16 33 H 0.08 1.72 8.01 -2.38 -0.02 1.70 16 34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 1.97 8.12 -2.39 -0.02 1.95 16 36 H 0.11 3.33 7.98 -2.39 -0.02 3.31 16 37 H 0.40 19.40 7.90 -92.70 -0.73 18.66 16 38 H 0.28 14.11 8.31 -92.71 -0.77 13.33 16 39 H 0.05 2.09 6.05 -2.39 -0.01 2.07 16 40 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.06 1.62 7.94 -2.39 -0.02 1.61 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -71.24 342.38 -0.43 -71.67 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -1.60 Total: 31.73 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 5.47 Total: 4.52 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -6.28 Total: -119.20 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.04 Total: -33.92 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -71.24 -0.43 -71.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560178046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.510 kcal (2) G-P(sol) polarization free energy of solvation -71.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds