Wall clock time and date at job start Tue Mar 31 2020 03:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99724 * 2 1 4 4 C 1.46900 * 111.00311 * 123.95758 * 2 1 3 5 5 C 1.52998 * 109.47179 * 75.85759 * 4 2 1 6 6 H 1.08995 * 109.47099 * 297.04285 * 5 4 2 7 7 C 1.52995 * 109.47135 * 177.04133 * 5 4 2 8 8 O 1.42894 * 109.47176 * 305.00302 * 7 5 4 9 9 N 1.46501 * 109.46908 * 57.04033 * 5 4 2 10 10 C 1.34772 * 120.00134 * 204.15050 * 9 5 4 11 11 O 1.21551 * 119.99986 * 0.02562 * 10 9 5 12 12 C 1.47891 * 120.00346 * 180.02562 * 10 9 5 13 13 C 1.39926 * 120.01857 * 0.29572 * 12 10 9 14 14 C 1.38325 * 120.34959 * 180.25375 * 13 12 10 15 15 C 1.37758 * 120.41754 * 359.45077 * 14 13 12 16 16 C 1.40747 * 120.03718 * 0.27082 * 15 14 13 17 17 C 1.41438 * 120.17687 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00183 * 27.70820 * 17 16 15 19 19 C 1.39940 * 119.99728 * 207.71348 * 17 16 15 20 20 N 1.30826 * 120.00101 * 14.13834 * 19 17 16 21 21 Si 1.86806 * 119.99686 * 194.14386 * 19 17 16 22 22 H 1.48500 * 109.47089 * 94.97706 * 21 19 17 23 23 H 1.48496 * 109.46889 * 214.97888 * 21 19 17 24 24 H 1.48500 * 109.46765 * 334.97833 * 21 19 17 25 25 C 1.38995 * 120.02563 * 179.97438 * 12 10 9 26 26 H 1.08993 * 109.47353 * 296.03936 * 1 2 3 27 27 H 1.09006 * 109.47525 * 56.04575 * 1 2 3 28 28 H 1.09011 * 109.46850 * 176.04117 * 1 2 3 29 29 H 1.08994 * 109.46928 * 188.29938 * 3 2 1 30 30 H 1.08994 * 109.47485 * 308.30563 * 3 2 1 31 31 H 1.09008 * 109.46639 * 68.30565 * 3 2 1 32 32 H 1.08999 * 109.46973 * 315.85982 * 4 2 1 33 33 H 1.08995 * 109.47220 * 195.86254 * 4 2 1 34 34 H 1.08998 * 109.47296 * 65.00239 * 7 5 4 35 35 H 1.08997 * 109.47207 * 185.00286 * 7 5 4 36 36 H 0.96705 * 114.00411 * 180.02562 * 8 7 5 37 37 H 0.97004 * 119.99868 * 24.15511 * 9 5 4 38 38 H 1.07988 * 119.82431 * 359.97438 * 13 12 10 39 39 H 1.08001 * 119.79103 * 179.72059 * 14 13 12 40 40 H 1.07992 * 119.98003 * 180.25421 * 15 14 13 41 41 H 0.96999 * 119.99833 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.20209 * 0.04825 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.8493 -2.2627 0.8559 6 1 0.7926 -2.5135 0.7636 7 6 2.4642 -3.0608 2.0073 8 8 3.8179 -2.6475 2.2036 9 7 2.5407 -2.5946 -0.3923 10 6 2.1720 -3.6817 -1.0985 11 8 1.2656 -4.3866 -0.6999 12 6 2.8703 -4.0170 -2.3583 13 6 3.9180 -3.2093 -2.8143 14 6 4.5724 -3.5136 -3.9944 15 6 4.2082 -4.6211 -4.7283 16 6 3.1606 -5.4485 -4.2824 17 6 2.7839 -6.5860 -5.0339 18 1 3.5101 -7.0858 -5.6577 19 6 1.4701 -7.0637 -4.9691 20 7 0.5286 -6.3199 -4.4476 21 14 1.0609 -8.7634 -5.6271 22 1 1.0977 -9.7468 -4.5150 23 1 -0.2964 -8.7475 -6.2292 24 1 2.0563 -9.1470 -6.6602 25 6 2.4909 -5.1384 -3.0866 26 1 -0.3634 0.4511 0.9233 27 1 -0.3634 0.5740 -0.8525 28 1 -0.3633 -1.0253 -0.0710 29 1 3.0749 1.3463 -0.1483 30 1 1.5309 1.9390 -0.8064 31 1 1.7708 1.8468 0.9550 32 1 1.4372 -0.5095 2.0378 33 1 3.0485 -0.5246 1.2819 34 1 1.8939 -2.8819 2.9187 35 1 2.4401 -4.1235 1.7664 36 1 4.2715 -3.1131 2.9197 37 1 3.2639 -2.0318 -0.7106 38 1 4.2142 -2.3413 -2.2443 39 1 5.3768 -2.8815 -4.3403 40 1 4.7266 -4.8543 -5.6465 41 1 -0.3820 -6.6509 -4.4030 42 1 1.6857 -5.7671 -2.7360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588864439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:54 Heat of formation + Delta-G solvation = -63.433363 kcal Electronic energy + Delta-G solvation = -23583.910784 eV Core-core repulsion = 20142.578235 eV Total energy + Delta-G solvation = -3441.332549 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.47854 -37.88243 -36.79790 -36.46449 -33.90761 -33.55640 -30.77672 -29.40457 -29.10469 -27.63436 -26.43059 -25.21657 -23.08832 -22.10860 -20.93132 -20.27090 -19.44528 -17.76107 -17.33903 -16.29533 -15.72895 -15.54684 -15.17002 -14.96869 -14.72778 -14.39256 -14.25755 -13.84555 -13.49410 -13.15000 -13.03885 -12.65289 -12.42742 -12.36110 -12.30107 -12.07837 -11.72042 -11.58414 -11.32155 -11.11603 -11.02973 -10.90750 -10.62654 -10.42155 -10.02212 -9.90812 -9.59873 -9.17689 -8.89690 -8.47173 -8.38496 -7.52592 -7.40569 -6.69406 -4.34859 2.31466 2.88510 3.12185 3.15637 3.20861 3.70621 3.93305 3.97158 3.99923 4.32998 4.74115 4.81025 5.03852 5.19021 5.25832 5.29964 5.35317 5.47540 5.55142 5.56286 5.68402 5.78203 5.80575 5.84013 5.92693 6.10146 6.21136 6.38841 6.79480 6.89392 6.95974 7.05735 7.08959 7.14228 7.29912 7.47270 7.59648 7.79447 7.86851 8.01404 8.23553 8.33355 8.59528 8.89114 8.91799 9.10909 10.25694 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.004006 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.814624 B = 6988.241656 C = 7155.132088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.542 5.542 3 C 0.027 3.973 4 C 0.051 3.949 5 C 0.157 3.843 6 H 0.094 0.906 7 C 0.063 3.937 8 O -0.568 6.568 9 N -0.706 5.706 10 C 0.566 3.434 11 O -0.557 6.557 12 C -0.127 4.127 13 C -0.206 4.206 14 C -0.102 4.102 15 C -0.208 4.208 16 C 0.098 3.902 17 C -0.464 4.464 18 H 0.080 0.920 19 C 0.073 3.927 20 N -0.791 5.791 21 Si 0.910 3.090 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.089 4.089 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.021 0.979 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.375 0.625 37 H 0.403 0.597 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.282 0.718 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 10.266 11.402 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.121 4.121 4 C -0.078 4.078 5 C 0.050 3.950 6 H 0.112 0.888 7 C -0.017 4.017 8 O -0.373 6.373 9 N -0.359 5.359 10 C 0.356 3.644 11 O -0.436 6.436 12 C -0.130 4.130 13 C -0.227 4.227 14 C -0.121 4.121 15 C -0.228 4.228 16 C 0.096 3.904 17 C -0.494 4.494 18 H 0.098 0.902 19 C -0.145 4.145 20 N -0.416 5.416 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.109 4.109 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.222 0.778 37 H 0.239 0.761 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.756 9.956 10.794 14.704 hybrid contribution -0.168 -0.351 0.764 0.857 sum 0.588 9.606 11.557 15.040 Atomic orbital electron populations 1.22444 0.87227 1.02734 1.00093 1.61846 1.08110 1.13551 1.43034 1.22383 1.01019 0.88763 0.99975 1.22345 1.01386 0.92805 0.91231 1.20857 0.97338 0.92863 0.83914 0.88819 1.22674 0.82792 0.99010 0.97179 1.86463 1.25746 1.66498 1.58558 1.45625 1.38486 1.28635 1.23110 1.18808 0.82237 0.79459 0.83863 1.90668 1.31007 1.50955 1.71018 1.19495 0.99013 0.99355 0.95162 1.20406 1.00942 1.01605 0.99697 1.20446 0.98940 0.97343 0.95331 1.21136 1.03940 0.97231 1.00485 1.17599 0.90419 0.91794 0.90612 1.19566 0.95442 1.10234 1.24167 0.90236 1.25922 0.96151 0.98594 0.93839 1.69786 1.02170 1.35705 1.33921 0.86265 0.78392 0.82154 0.79697 1.19351 1.20271 1.18621 1.21629 1.00351 0.95668 0.93240 0.95918 0.91314 0.91034 0.91252 0.91397 0.95997 0.93738 0.89338 0.93443 0.92452 0.77838 0.76114 0.89044 0.88959 0.88682 0.90660 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.39 60.06 0.56 0.83 16 2 N -0.54 -6.71 4.72 -251.26 -1.19 -7.90 16 3 C 0.03 0.27 9.52 60.07 0.57 0.84 16 4 C 0.05 0.60 4.39 -3.83 -0.02 0.59 16 5 C 0.16 2.27 2.38 -67.93 -0.16 2.11 16 6 H 0.09 1.49 6.51 -51.93 -0.34 1.15 16 7 C 0.06 0.81 6.84 37.16 0.25 1.06 16 8 O -0.57 -6.68 12.67 -35.23 -0.45 -7.12 16 9 N -0.71 -12.40 4.75 -54.74 -0.26 -12.66 16 10 C 0.57 12.69 7.73 -12.31 -0.10 12.59 16 11 O -0.56 -14.01 16.01 5.32 0.09 -13.93 16 12 C -0.13 -3.10 5.87 -105.03 -0.62 -3.71 16 13 C -0.21 -4.53 9.55 -38.92 -0.37 -4.90 16 14 C -0.10 -2.26 10.01 -39.72 -0.40 -2.65 16 15 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 16 C 0.10 2.66 5.55 -106.87 -0.59 2.06 16 17 C -0.46 -12.49 9.05 -37.73 -0.34 -12.83 16 18 H 0.08 2.03 7.88 -52.49 -0.41 1.62 16 19 C 0.07 1.89 5.19 -17.34 -0.09 1.80 16 20 N -0.79 -21.47 10.96 55.55 0.61 -20.86 16 21 Si 0.91 19.22 29.58 -169.99 -5.03 14.19 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 C -0.09 -2.42 8.21 -38.44 -0.32 -2.74 16 26 H 0.02 0.22 8.09 -51.93 -0.42 -0.20 16 27 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 28 H 0.07 0.94 6.95 -51.92 -0.36 0.58 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 31 H 0.02 0.19 8.14 -51.92 -0.42 -0.23 16 32 H 0.04 0.47 7.96 -51.93 -0.41 0.05 16 33 H 0.09 1.05 7.25 -51.93 -0.38 0.68 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.38 2.80 9.12 45.56 0.42 3.21 16 37 H 0.40 6.73 6.61 -40.82 -0.27 6.46 16 38 H 0.09 1.72 6.38 -52.49 -0.33 1.39 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 42 H 0.13 3.90 5.84 -52.49 -0.31 3.60 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -31.33 349.14 -8.28 -39.61 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.33 Total: 13.81 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.99 Total: -10.41 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.84 Total: -41.41 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.36 Total: -21.05 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.33 -8.28 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588864439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.819 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds