Wall clock time and date at job start Tue Mar 31 2020 03:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99724 * 2 1 4 4 C 1.46900 * 111.00311 * 123.95758 * 2 1 3 5 5 C 1.52998 * 109.47179 * 75.85759 * 4 2 1 6 6 H 1.08995 * 109.47099 * 297.04285 * 5 4 2 7 7 C 1.52995 * 109.47135 * 177.04133 * 5 4 2 8 8 O 1.42894 * 109.47176 * 305.00302 * 7 5 4 9 9 N 1.46501 * 109.46908 * 57.04033 * 5 4 2 10 10 C 1.34772 * 120.00134 * 204.15050 * 9 5 4 11 11 O 1.21551 * 119.99986 * 0.02562 * 10 9 5 12 12 C 1.47891 * 120.00346 * 180.02562 * 10 9 5 13 13 C 1.39926 * 120.01857 * 0.29572 * 12 10 9 14 14 C 1.38325 * 120.34959 * 180.25375 * 13 12 10 15 15 C 1.37758 * 120.41754 * 359.45077 * 14 13 12 16 16 C 1.40747 * 120.03718 * 0.27082 * 15 14 13 17 17 C 1.41438 * 120.17687 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00183 * 27.70820 * 17 16 15 19 19 C 1.39940 * 119.99728 * 207.71348 * 17 16 15 20 20 N 1.30826 * 120.00101 * 14.13834 * 19 17 16 21 21 Si 1.86806 * 119.99686 * 194.14386 * 19 17 16 22 22 H 1.48500 * 109.47089 * 94.97706 * 21 19 17 23 23 H 1.48496 * 109.46889 * 214.97888 * 21 19 17 24 24 H 1.48500 * 109.46765 * 334.97833 * 21 19 17 25 25 C 1.38995 * 120.02563 * 179.97438 * 12 10 9 26 26 H 1.08993 * 109.47353 * 296.03936 * 1 2 3 27 27 H 1.09006 * 109.47525 * 56.04575 * 1 2 3 28 28 H 1.09011 * 109.46850 * 176.04117 * 1 2 3 29 29 H 1.08994 * 109.46928 * 188.29938 * 3 2 1 30 30 H 1.08994 * 109.47485 * 308.30563 * 3 2 1 31 31 H 1.09008 * 109.46639 * 68.30565 * 3 2 1 32 32 H 1.08999 * 109.46973 * 315.85982 * 4 2 1 33 33 H 1.08995 * 109.47220 * 195.86254 * 4 2 1 34 34 H 1.08998 * 109.47296 * 65.00239 * 7 5 4 35 35 H 1.08997 * 109.47207 * 185.00286 * 7 5 4 36 36 H 0.96705 * 114.00411 * 180.02562 * 8 7 5 37 37 H 0.97004 * 119.99868 * 24.15511 * 9 5 4 38 38 H 1.07988 * 119.82431 * 359.97438 * 13 12 10 39 39 H 1.08001 * 119.79103 * 179.72059 * 14 13 12 40 40 H 1.07992 * 119.98003 * 180.25421 * 15 14 13 41 41 H 0.96999 * 119.99833 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.20209 * 0.04825 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.8493 -2.2627 0.8559 6 1 0.7926 -2.5135 0.7636 7 6 2.4642 -3.0608 2.0073 8 8 3.8179 -2.6475 2.2036 9 7 2.5407 -2.5946 -0.3923 10 6 2.1720 -3.6817 -1.0985 11 8 1.2656 -4.3866 -0.6999 12 6 2.8703 -4.0170 -2.3583 13 6 3.9180 -3.2093 -2.8143 14 6 4.5724 -3.5136 -3.9944 15 6 4.2082 -4.6211 -4.7283 16 6 3.1606 -5.4485 -4.2824 17 6 2.7839 -6.5860 -5.0339 18 1 3.5101 -7.0858 -5.6577 19 6 1.4701 -7.0637 -4.9691 20 7 0.5286 -6.3199 -4.4476 21 14 1.0609 -8.7634 -5.6271 22 1 1.0977 -9.7468 -4.5150 23 1 -0.2964 -8.7475 -6.2292 24 1 2.0563 -9.1470 -6.6602 25 6 2.4909 -5.1384 -3.0866 26 1 -0.3634 0.4511 0.9233 27 1 -0.3634 0.5740 -0.8525 28 1 -0.3633 -1.0253 -0.0710 29 1 3.0749 1.3463 -0.1483 30 1 1.5309 1.9390 -0.8064 31 1 1.7708 1.8468 0.9550 32 1 1.4372 -0.5095 2.0378 33 1 3.0485 -0.5246 1.2819 34 1 1.8939 -2.8819 2.9187 35 1 2.4401 -4.1235 1.7664 36 1 4.2715 -3.1131 2.9197 37 1 3.2639 -2.0318 -0.7106 38 1 4.2142 -2.3413 -2.2443 39 1 5.3768 -2.8815 -4.3403 40 1 4.7266 -4.8543 -5.6465 41 1 -0.3820 -6.6509 -4.4030 42 1 1.6857 -5.7671 -2.7360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588864439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:53 Heat of formation + Delta-G solvation = -87.611198 kcal Electronic energy + Delta-G solvation = -23584.959213 eV Core-core repulsion = 20142.578235 eV Total energy + Delta-G solvation = -3442.380978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.03898 -39.28495 -38.42329 -37.44536 -35.62042 -35.15630 -32.42140 -31.28126 -30.63653 -28.47701 -27.38725 -27.15230 -24.67654 -23.21632 -22.78286 -21.55591 -21.12134 -19.50667 -18.44727 -17.93569 -17.17541 -16.86517 -16.53764 -16.44317 -15.97625 -15.89745 -15.46225 -15.22119 -15.01798 -14.87273 -14.41639 -14.23977 -14.05174 -13.47197 -13.39763 -13.24136 -13.03422 -12.92908 -12.80556 -12.58954 -12.50202 -12.30483 -12.17374 -11.92696 -11.82069 -11.46724 -11.09074 -11.01180 -10.66607 -10.00060 -9.41051 -9.33870 -9.27306 -8.61305 -6.37501 0.42979 1.03128 1.37033 1.48443 1.52069 2.16135 2.21716 2.32622 2.83481 2.97797 3.38052 3.72129 3.79851 4.06539 4.14672 4.24691 4.30385 4.42522 4.44796 4.47341 4.59601 4.64117 4.65669 4.72367 4.77508 4.89710 4.97580 5.04052 5.06377 5.11819 5.21660 5.34322 5.54503 5.60656 5.90015 5.95660 6.06747 6.07743 6.11713 6.31352 6.56903 6.77973 6.87372 6.91001 6.97223 7.41841 8.35832 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.004006 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.814624 B = 6988.241656 C = 7155.132088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.566 5.566 3 C 0.028 3.972 4 C 0.063 3.937 5 C 0.148 3.852 6 H 0.075 0.925 7 C 0.072 3.928 8 O -0.575 6.575 9 N -0.684 5.684 10 C 0.561 3.439 11 O -0.595 6.595 12 C -0.138 4.138 13 C -0.190 4.190 14 C -0.098 4.098 15 C -0.214 4.214 16 C 0.067 3.933 17 C -0.501 4.501 18 H 0.083 0.917 19 C 0.028 3.972 20 N -0.833 5.833 21 Si 0.985 3.015 22 H -0.267 1.267 23 H -0.269 1.269 24 H -0.251 1.251 25 C -0.126 4.126 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.026 0.974 36 H 0.396 0.604 37 H 0.410 0.590 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.109 0.891 41 H 0.285 0.715 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.231 12.216 12.242 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.290 5.290 3 C -0.119 4.119 4 C -0.065 4.065 5 C 0.043 3.957 6 H 0.093 0.907 7 C -0.008 4.008 8 O -0.383 6.383 9 N -0.334 5.334 10 C 0.351 3.649 11 O -0.478 6.478 12 C -0.141 4.141 13 C -0.210 4.210 14 C -0.116 4.116 15 C -0.234 4.234 16 C 0.065 3.935 17 C -0.531 4.531 18 H 0.101 0.899 19 C -0.186 4.186 20 N -0.459 5.459 21 Si 0.805 3.195 22 H -0.192 1.192 23 H -0.194 1.194 24 H -0.174 1.174 25 C -0.147 4.147 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.245 0.755 37 H 0.247 0.753 38 H 0.148 0.852 39 H 0.156 0.844 40 H 0.127 0.873 41 H 0.095 0.905 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.356 11.957 11.664 16.869 hybrid contribution -0.538 -0.766 0.601 1.113 sum 1.818 11.191 12.265 16.703 Atomic orbital electron populations 1.22388 0.87213 1.01447 1.01240 1.61815 1.08424 1.15207 1.43586 1.22404 1.01181 0.87420 1.00931 1.22236 1.02067 0.90337 0.91903 1.21136 0.96194 0.95455 0.82936 0.90734 1.22454 0.83952 0.96693 0.97680 1.86399 1.25181 1.66790 1.59896 1.45461 1.37918 1.26615 1.23450 1.18664 0.81891 0.80499 0.83842 1.90643 1.32697 1.52583 1.71852 1.19826 0.99689 0.98822 0.95812 1.20841 0.98981 1.01568 0.99582 1.20918 0.99413 0.96687 0.94609 1.21437 1.03041 0.97602 1.01282 1.17946 0.91742 0.92918 0.90883 1.19860 0.96335 1.11471 1.25401 0.89889 1.26841 0.95585 1.02420 0.93724 1.69896 1.02588 1.37743 1.35681 0.85156 0.78548 0.76641 0.79144 1.19178 1.19382 1.17390 1.21424 1.01127 0.97366 0.94738 0.93969 0.91082 0.93411 0.90775 0.91089 0.94547 0.91614 0.88664 0.90136 0.95528 0.75473 0.75316 0.85154 0.84446 0.87287 0.90481 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.39 127.69 1.20 1.75 16 2 N -0.57 -12.74 4.72 -948.85 -4.48 -17.22 16 3 C 0.03 0.47 9.52 127.69 1.22 1.69 16 4 C 0.06 1.32 4.39 86.30 0.38 1.70 16 5 C 0.15 4.14 2.38 44.99 0.11 4.25 16 6 H 0.07 2.41 6.51 -2.39 -0.02 2.39 16 7 C 0.07 1.73 6.84 71.98 0.49 2.22 16 8 O -0.57 -11.97 12.67 -148.98 -1.89 -13.86 16 9 N -0.68 -23.43 4.75 -445.38 -2.12 -25.54 16 10 C 0.56 25.76 7.73 86.80 0.67 26.43 16 11 O -0.60 -31.55 16.01 -3.88 -0.06 -31.61 16 12 C -0.14 -6.85 5.87 -20.13 -0.12 -6.97 16 13 C -0.19 -7.94 9.55 22.70 0.22 -7.73 16 14 C -0.10 -4.08 10.01 22.18 0.22 -3.86 16 15 C -0.21 -10.33 9.78 22.77 0.22 -10.11 16 16 C 0.07 3.77 5.55 -21.32 -0.12 3.65 16 17 C -0.50 -28.03 9.05 23.47 0.21 -27.82 16 18 H 0.08 4.38 7.88 -2.91 -0.02 4.36 16 19 C 0.03 1.51 5.19 85.26 0.44 1.95 16 20 N -0.83 -47.84 10.96 21.83 0.24 -47.60 16 21 Si 0.98 40.66 29.58 68.60 2.03 42.69 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 24 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 25 C -0.13 -7.24 8.21 23.01 0.19 -7.05 16 26 H 0.04 0.74 8.09 -2.39 -0.02 0.73 16 27 H 0.07 1.49 8.07 -2.38 -0.02 1.47 16 28 H 0.05 1.26 6.95 -2.38 -0.02 1.24 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.14 8.05 -2.39 -0.02 1.12 16 31 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.07 1.14 7.96 -2.39 -0.02 1.12 16 33 H 0.10 1.92 7.25 -2.39 -0.02 1.90 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.40 4.78 9.12 -74.05 -0.68 4.11 16 37 H 0.41 12.73 6.61 -92.70 -0.61 12.11 16 38 H 0.13 4.38 6.38 -2.92 -0.02 4.37 16 39 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 41 H 0.28 15.06 8.30 -92.71 -0.77 14.30 16 42 H 0.10 6.20 5.84 -2.91 -0.02 6.18 16 Total: -1.00 -72.42 349.14 -1.19 -73.61 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: -0.25 Total: 39.42 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 5.33 Total: -19.89 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -6.35 Total: -90.36 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -1.95 Total: -45.47 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -72.42 -1.19 -73.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588864439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.000 kcal (2) G-P(sol) polarization free energy of solvation -72.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds