Wall clock time and date at job start Tue Mar 31 2020 03:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46909 * 110.99892 * 2 1 4 4 C 1.46897 * 111.00242 * 123.95030 * 2 1 3 5 5 C 1.53003 * 109.46804 * 66.04593 * 4 2 1 6 6 H 1.08996 * 109.47348 * 295.00409 * 5 4 2 7 7 C 1.53005 * 109.47084 * 175.00050 * 5 4 2 8 8 O 1.42899 * 109.47233 * 305.00576 * 7 5 4 9 9 N 1.46504 * 109.46954 * 55.00301 * 5 4 2 10 10 C 1.34774 * 119.99889 * 204.99669 * 9 5 4 11 11 O 1.21583 * 120.00214 * 0.02562 * 10 9 5 12 12 C 1.47644 * 119.99773 * 180.02562 * 10 9 5 13 13 C 1.40008 * 119.89672 * 359.72572 * 12 10 9 14 14 C 1.36313 * 120.11092 * 179.75682 * 13 12 10 15 15 C 1.40889 * 119.88702 * 0.51930 * 14 13 12 16 16 C 1.41106 * 120.10470 * 179.71288 * 15 14 13 17 17 H 1.08005 * 120.00538 * 204.65199 * 16 15 14 18 18 C 1.40228 * 120.00060 * 24.65356 * 16 15 14 19 19 N 1.30650 * 119.99978 * 17.85950 * 18 16 15 20 20 Si 1.86803 * 120.00187 * 197.86451 * 18 16 15 21 21 H 1.48500 * 109.47062 * 60.00109 * 20 18 16 22 22 H 1.48505 * 109.46908 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47040 * 299.99692 * 20 18 16 24 24 C 1.40890 * 119.79580 * 359.73716 * 15 14 13 25 25 C 1.36323 * 119.88923 * 0.02562 * 24 15 14 26 26 H 1.09005 * 109.47087 * 60.00278 * 1 2 3 27 27 H 1.09006 * 109.47068 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47395 * 299.99684 * 1 2 3 29 29 H 1.09004 * 109.46903 * 63.95003 * 3 2 1 30 30 H 1.09000 * 109.46911 * 183.94863 * 3 2 1 31 31 H 1.08994 * 109.46857 * 303.95333 * 3 2 1 32 32 H 1.08995 * 109.47783 * 186.04723 * 4 2 1 33 33 H 1.09008 * 109.47043 * 306.05321 * 4 2 1 34 34 H 1.09000 * 109.46923 * 65.00565 * 7 5 4 35 35 H 1.08992 * 109.46956 * 185.00174 * 7 5 4 36 36 H 0.96693 * 114.00174 * 180.02562 * 8 7 5 37 37 H 0.96997 * 119.99969 * 25.00224 * 9 5 4 38 38 H 1.08011 * 119.94758 * 0.02562 * 13 12 10 39 39 H 1.07995 * 120.05840 * 180.22816 * 14 13 12 40 40 H 0.96999 * 120.00156 * 179.97438 * 19 18 16 41 41 H 1.07998 * 120.05841 * 179.97438 * 24 15 14 42 42 H 1.07997 * 119.94263 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6314 -2.2425 0.9704 6 1 0.5488 -2.3579 1.0213 7 6 2.2845 -3.0585 2.0879 8 8 3.6927 -2.8159 2.0943 9 7 2.1128 -2.7201 -0.3283 10 6 1.5155 -3.7716 -0.9232 11 8 0.5769 -4.3236 -0.3824 12 6 2.0011 -4.2532 -2.2317 13 6 3.0785 -3.6124 -2.8552 14 6 3.5335 -4.0565 -4.0610 15 6 2.9107 -5.1555 -4.6849 16 6 3.3741 -5.6152 -5.9359 17 1 2.7084 -6.1548 -6.5934 18 6 4.6989 -5.3716 -6.3256 19 7 5.5931 -5.0440 -5.4311 20 14 5.1852 -5.5153 -8.1234 21 1 4.3916 -4.5531 -8.9293 22 1 6.6310 -5.2097 -8.2711 23 1 4.9197 -6.8968 -8.5991 24 6 1.8234 -5.7938 -4.0561 25 6 1.3786 -5.3455 -2.8480 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7042 1.8724 0.9233 30 1 3.0827 1.3433 -0.0708 31 1 1.5898 1.9163 -0.8524 32 1 3.0797 -0.6610 1.1757 33 1 1.5610 -0.3871 2.0628 34 1 1.8607 -2.7640 3.0480 35 1 2.0993 -4.1192 1.9190 36 1 4.1725 -3.3021 2.7787 37 1 2.8615 -2.2796 -0.7599 38 1 3.5527 -2.7674 -2.3780 39 1 4.3669 -3.5638 -4.5394 40 1 6.5096 -4.8758 -5.7006 41 1 1.3426 -6.6363 -4.5308 42 1 0.5449 -5.8338 -2.3654 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590369652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:02 Heat of formation + Delta-G solvation = -66.719249 kcal Electronic energy + Delta-G solvation = -23406.336146 eV Core-core repulsion = 19964.861111 eV Total energy + Delta-G solvation = -3441.475035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.43131 -37.88239 -36.84106 -36.44904 -33.78768 -33.76915 -30.75783 -29.40857 -29.20950 -27.62358 -26.43618 -25.73397 -22.71434 -21.90820 -20.93730 -20.24576 -19.49323 -17.47457 -17.43893 -16.72892 -15.87608 -15.55811 -15.38228 -15.02069 -14.69439 -14.22250 -13.95784 -13.83567 -13.48626 -13.16597 -13.01187 -12.68737 -12.38683 -12.34879 -12.03970 -12.00860 -11.82257 -11.70596 -11.36324 -11.21620 -11.18356 -10.93823 -10.83662 -10.56304 -10.01141 -9.95629 -9.47438 -9.26824 -8.85838 -8.41877 -8.37287 -7.62212 -7.45351 -6.96085 -4.52708 2.33594 2.96991 2.98438 3.02932 3.12529 3.75506 3.79254 3.95627 4.02750 4.35440 4.66013 4.80747 5.06864 5.22090 5.27423 5.32095 5.36796 5.49130 5.56580 5.60472 5.66755 5.79769 5.82107 5.93429 5.98056 6.18986 6.29536 6.40061 6.84961 6.89955 6.92474 6.97953 7.09226 7.21316 7.22829 7.52119 7.63613 7.75876 7.89868 7.94543 8.15330 8.43832 8.48360 8.70923 8.83976 9.21734 9.95978 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.003705 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.547373 B = 7555.821791 C = 7886.475015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.541 5.541 3 C 0.027 3.973 4 C 0.050 3.950 5 C 0.156 3.844 6 H 0.093 0.907 7 C 0.064 3.936 8 O -0.567 6.567 9 N -0.712 5.712 10 C 0.573 3.427 11 O -0.587 6.587 12 C -0.280 4.280 13 C -0.058 4.058 14 C -0.179 4.179 15 C 0.129 3.871 16 C -0.446 4.446 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.773 5.773 20 Si 0.913 3.087 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.240 4.240 25 C -0.024 4.024 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.375 0.625 37 H 0.403 0.597 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.286 0.714 41 H 0.096 0.904 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 9.221 10.192 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.122 4.122 4 C -0.078 4.078 5 C 0.049 3.951 6 H 0.111 0.889 7 C -0.016 4.016 8 O -0.371 6.371 9 N -0.363 5.363 10 C 0.368 3.632 11 O -0.470 6.470 12 C -0.284 4.284 13 C -0.077 4.077 14 C -0.198 4.198 15 C 0.126 3.874 16 C -0.474 4.474 17 H 0.101 0.899 18 C -0.146 4.146 19 N -0.396 5.396 20 Si 0.736 3.264 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.260 4.260 25 C -0.043 4.043 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.221 0.779 37 H 0.239 0.761 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.200 9.070 9.673 13.441 hybrid contribution 0.563 0.167 0.336 0.676 sum -1.637 9.237 10.008 13.717 Atomic orbital electron populations 1.22435 0.87328 1.02590 1.00240 1.61875 1.08091 1.13510 1.42931 1.22373 1.00900 0.88736 1.00165 1.22355 1.01582 0.92581 0.91315 1.20853 0.98782 0.91630 0.83795 0.88930 1.22668 0.81526 0.99931 0.97475 1.86478 1.19395 1.71739 1.59531 1.45597 1.36936 1.33680 1.20097 1.18570 0.81161 0.78361 0.85102 1.90602 1.30398 1.58813 1.67190 1.18909 1.05864 1.06095 0.97538 1.20501 0.94579 0.97135 0.95514 1.20967 1.03325 0.98886 0.96657 1.17770 0.89415 0.88790 0.91441 1.19795 0.95808 1.30314 1.01491 0.89866 1.26076 0.96335 0.92260 0.99893 1.69745 1.03539 1.30800 1.35550 0.86287 0.78026 0.80167 0.81899 1.18518 1.20097 1.18731 1.20702 1.04274 1.03578 0.97415 1.20351 0.96274 0.93607 0.94091 0.91349 0.90908 0.96005 0.96045 0.91268 0.91350 0.89154 0.94135 0.93612 0.92558 0.77857 0.76117 0.89165 0.86284 0.90263 0.88541 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.40 60.06 0.56 0.83 16 2 N -0.54 -6.79 4.74 -251.25 -1.19 -7.98 16 3 C 0.03 0.27 9.57 60.07 0.57 0.84 16 4 C 0.05 0.61 4.40 -3.82 -0.02 0.59 16 5 C 0.16 2.26 2.15 -67.92 -0.15 2.11 16 6 H 0.09 1.43 6.15 -51.93 -0.32 1.12 16 7 C 0.06 0.82 6.85 37.16 0.25 1.08 16 8 O -0.57 -7.00 12.64 -35.23 -0.45 -7.45 16 9 N -0.71 -12.56 4.70 -54.81 -0.26 -12.82 16 10 C 0.57 12.44 7.73 -12.42 -0.10 12.34 16 11 O -0.59 -13.88 15.98 5.29 0.08 -13.80 16 12 C -0.28 -6.59 5.89 -104.73 -0.62 -7.21 16 13 C -0.06 -1.34 9.47 -39.61 -0.38 -1.72 16 14 C -0.18 -4.53 8.64 -39.27 -0.34 -4.86 16 15 C 0.13 3.37 5.58 -106.80 -0.60 2.77 16 16 C -0.45 -11.36 9.04 -37.75 -0.34 -11.70 16 17 H 0.08 2.02 7.91 -52.48 -0.42 1.60 16 18 C 0.08 1.80 5.14 -17.31 -0.09 1.71 16 19 N -0.77 -18.94 10.95 55.56 0.61 -18.34 16 20 Si 0.91 17.62 29.60 -169.99 -5.03 12.59 16 21 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.28 -5.18 7.11 56.52 0.40 -4.77 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 24 C -0.24 -5.96 9.73 -39.27 -0.38 -6.35 16 25 C -0.02 -0.58 9.52 -39.61 -0.38 -0.96 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.98 6.41 -51.93 -0.33 0.65 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.13 7.32 -51.93 -0.38 0.75 16 33 H 0.04 0.43 8.12 -51.92 -0.42 0.01 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.38 3.01 9.12 45.56 0.42 3.42 16 37 H 0.40 7.02 6.60 -40.82 -0.27 6.75 16 38 H 0.09 1.85 6.37 -52.48 -0.33 1.51 16 39 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 40 H 0.29 6.33 8.29 -40.82 -0.34 5.99 16 41 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 42 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 348.14 15.07 5.25 5.25 Total: -1.00 -29.65 348.14 -8.26 -37.91 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -5.30 Total: 15.15 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.98 Total: -10.52 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.84 Total: -39.13 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.36 Total: -21.25 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.65 -8.26 -37.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590369652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.809 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds