Wall clock time and date at job start Tue Mar 31 2020 03:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46909 * 110.99892 * 2 1 4 4 C 1.46897 * 111.00242 * 123.95030 * 2 1 3 5 5 C 1.53003 * 109.46804 * 66.04593 * 4 2 1 6 6 H 1.08996 * 109.47348 * 295.00409 * 5 4 2 7 7 C 1.53005 * 109.47084 * 175.00050 * 5 4 2 8 8 O 1.42899 * 109.47233 * 305.00576 * 7 5 4 9 9 N 1.46504 * 109.46954 * 55.00301 * 5 4 2 10 10 C 1.34774 * 119.99889 * 204.99669 * 9 5 4 11 11 O 1.21583 * 120.00214 * 0.02562 * 10 9 5 12 12 C 1.47644 * 119.99773 * 180.02562 * 10 9 5 13 13 C 1.40008 * 119.89672 * 359.72572 * 12 10 9 14 14 C 1.36313 * 120.11092 * 179.75682 * 13 12 10 15 15 C 1.40889 * 119.88702 * 0.51930 * 14 13 12 16 16 C 1.41106 * 120.10470 * 179.71288 * 15 14 13 17 17 H 1.08005 * 120.00538 * 204.65199 * 16 15 14 18 18 C 1.40228 * 120.00060 * 24.65356 * 16 15 14 19 19 N 1.30650 * 119.99978 * 17.85950 * 18 16 15 20 20 Si 1.86803 * 120.00187 * 197.86451 * 18 16 15 21 21 H 1.48500 * 109.47062 * 60.00109 * 20 18 16 22 22 H 1.48505 * 109.46908 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47040 * 299.99692 * 20 18 16 24 24 C 1.40890 * 119.79580 * 359.73716 * 15 14 13 25 25 C 1.36323 * 119.88923 * 0.02562 * 24 15 14 26 26 H 1.09005 * 109.47087 * 60.00278 * 1 2 3 27 27 H 1.09006 * 109.47068 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47395 * 299.99684 * 1 2 3 29 29 H 1.09004 * 109.46903 * 63.95003 * 3 2 1 30 30 H 1.09000 * 109.46911 * 183.94863 * 3 2 1 31 31 H 1.08994 * 109.46857 * 303.95333 * 3 2 1 32 32 H 1.08995 * 109.47783 * 186.04723 * 4 2 1 33 33 H 1.09008 * 109.47043 * 306.05321 * 4 2 1 34 34 H 1.09000 * 109.46923 * 65.00565 * 7 5 4 35 35 H 1.08992 * 109.46956 * 185.00174 * 7 5 4 36 36 H 0.96693 * 114.00174 * 180.02562 * 8 7 5 37 37 H 0.96997 * 119.99969 * 25.00224 * 9 5 4 38 38 H 1.08011 * 119.94758 * 0.02562 * 13 12 10 39 39 H 1.07995 * 120.05840 * 180.22816 * 14 13 12 40 40 H 0.96999 * 120.00156 * 179.97438 * 19 18 16 41 41 H 1.07998 * 120.05841 * 179.97438 * 24 15 14 42 42 H 1.07997 * 119.94263 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6314 -2.2425 0.9704 6 1 0.5488 -2.3579 1.0213 7 6 2.2845 -3.0585 2.0879 8 8 3.6927 -2.8159 2.0943 9 7 2.1128 -2.7201 -0.3283 10 6 1.5155 -3.7716 -0.9232 11 8 0.5769 -4.3236 -0.3824 12 6 2.0011 -4.2532 -2.2317 13 6 3.0785 -3.6124 -2.8552 14 6 3.5335 -4.0565 -4.0610 15 6 2.9107 -5.1555 -4.6849 16 6 3.3741 -5.6152 -5.9359 17 1 2.7084 -6.1548 -6.5934 18 6 4.6989 -5.3716 -6.3256 19 7 5.5931 -5.0440 -5.4311 20 14 5.1852 -5.5153 -8.1234 21 1 4.3916 -4.5531 -8.9293 22 1 6.6310 -5.2097 -8.2711 23 1 4.9197 -6.8968 -8.5991 24 6 1.8234 -5.7938 -4.0561 25 6 1.3786 -5.3455 -2.8480 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7042 1.8724 0.9233 30 1 3.0827 1.3433 -0.0708 31 1 1.5898 1.9163 -0.8524 32 1 3.0797 -0.6610 1.1757 33 1 1.5610 -0.3871 2.0628 34 1 1.8607 -2.7640 3.0480 35 1 2.0993 -4.1192 1.9190 36 1 4.1725 -3.3021 2.7787 37 1 2.8615 -2.2796 -0.7599 38 1 3.5527 -2.7674 -2.3780 39 1 4.3669 -3.5638 -4.5394 40 1 6.5096 -4.8758 -5.7006 41 1 1.3426 -6.6363 -4.5308 42 1 0.5449 -5.8338 -2.3654 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590369652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:01 Heat of formation + Delta-G solvation = -88.478966 kcal Electronic energy + Delta-G solvation = -23407.279718 eV Core-core repulsion = 19964.861111 eV Total energy + Delta-G solvation = -3442.418607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.94716 -39.34246 -38.42961 -37.43752 -35.63309 -35.14109 -32.39008 -31.28200 -30.74406 -28.48959 -27.63447 -27.31708 -24.13696 -23.21386 -22.77556 -21.60562 -21.06131 -19.33243 -18.61497 -18.24470 -17.27020 -17.00498 -16.56178 -16.09630 -15.93931 -15.71901 -15.40928 -15.23169 -15.00141 -14.85031 -14.40992 -14.13376 -13.84570 -13.64088 -13.46167 -13.17284 -13.16551 -12.94282 -12.82828 -12.62378 -12.61509 -12.35570 -12.25013 -11.89388 -11.75464 -11.33517 -11.09505 -10.98575 -10.59229 -9.91757 -9.53486 -9.36146 -9.27340 -8.76300 -6.45459 0.49778 1.17973 1.39906 1.46328 1.53346 2.16088 2.21676 2.44829 2.82670 3.01313 3.40339 3.72961 3.78732 4.10242 4.25362 4.32171 4.33314 4.35225 4.44974 4.46789 4.48223 4.63363 4.67128 4.72736 4.77558 4.94753 4.98881 5.04036 5.04735 5.06853 5.19805 5.33373 5.60957 5.69528 5.86582 5.98398 6.02923 6.08072 6.11226 6.25524 6.56991 6.79588 6.83221 6.88608 6.92714 7.54274 8.18939 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.003705 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.547373 B = 7555.821791 C = 7886.475015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.564 5.564 3 C 0.028 3.972 4 C 0.061 3.939 5 C 0.148 3.852 6 H 0.082 0.918 7 C 0.071 3.929 8 O -0.578 6.578 9 N -0.696 5.696 10 C 0.573 3.427 11 O -0.610 6.610 12 C -0.290 4.290 13 C -0.051 4.051 14 C -0.198 4.198 15 C 0.102 3.898 16 C -0.478 4.478 17 H 0.085 0.915 18 C 0.039 3.961 19 N -0.800 5.800 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.264 1.264 23 H -0.258 1.258 24 C -0.254 4.254 25 C -0.034 4.034 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.029 0.971 36 H 0.395 0.605 37 H 0.405 0.595 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.296 0.704 41 H 0.104 0.896 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.973 10.614 10.690 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.288 5.288 3 C -0.120 4.120 4 C -0.067 4.067 5 C 0.043 3.957 6 H 0.100 0.900 7 C -0.009 4.009 8 O -0.386 6.386 9 N -0.346 5.346 10 C 0.366 3.634 11 O -0.496 6.496 12 C -0.294 4.294 13 C -0.070 4.070 14 C -0.217 4.217 15 C 0.099 3.901 16 C -0.505 4.505 17 H 0.103 0.897 18 C -0.180 4.180 19 N -0.423 5.423 20 Si 0.807 3.193 21 H -0.183 1.183 22 H -0.188 1.188 23 H -0.182 1.182 24 C -0.273 4.273 25 C -0.053 4.053 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.244 0.756 37 H 0.241 0.759 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.352 10.487 10.219 14.705 hybrid contribution 0.307 -0.231 0.294 0.484 sum -1.045 10.255 10.513 14.724 Atomic orbital electron populations 1.22367 0.87213 1.01408 1.01256 1.61854 1.08443 1.15057 1.43462 1.22387 1.00983 0.87528 1.01069 1.22242 1.01600 0.90654 0.92210 1.21132 0.98384 0.93696 0.82481 0.90024 1.22504 0.82155 0.97950 0.98296 1.86423 1.19095 1.72196 1.60863 1.45489 1.36031 1.32031 1.21026 1.18325 0.81131 0.79268 0.84633 1.90583 1.31481 1.59888 1.67628 1.19225 1.05778 1.05865 0.98572 1.20680 0.94085 0.97422 0.94767 1.20987 1.03762 0.99306 0.97694 1.18114 0.90172 0.89519 0.92310 1.20085 0.97061 1.31562 1.01772 0.89675 1.26927 0.95537 0.91231 1.04342 1.69770 1.04265 1.30613 1.37697 0.85163 0.78128 0.80209 0.75772 1.18256 1.18760 1.18229 1.20850 1.04529 1.04080 0.97841 1.20502 0.96570 0.94131 0.94105 0.91201 0.93123 0.94132 0.94590 0.91004 0.91045 0.89154 0.91919 0.90174 0.95249 0.75579 0.75875 0.86604 0.87021 0.89232 0.87812 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.40 127.69 1.20 1.77 16 2 N -0.56 -13.06 4.74 -948.83 -4.50 -17.56 16 3 C 0.03 0.50 9.57 127.69 1.22 1.72 16 4 C 0.06 1.34 4.40 86.30 0.38 1.72 16 5 C 0.15 4.10 2.15 44.99 0.10 4.19 16 6 H 0.08 2.47 6.15 -2.39 -0.01 2.46 16 7 C 0.07 1.70 6.85 71.98 0.49 2.19 16 8 O -0.58 -12.98 12.64 -148.98 -1.88 -14.86 16 9 N -0.70 -24.06 4.70 -445.58 -2.09 -26.15 16 10 C 0.57 24.95 7.73 86.73 0.67 25.62 16 11 O -0.61 -29.18 15.98 -3.98 -0.06 -29.25 16 12 C -0.29 -13.83 5.89 -19.93 -0.12 -13.95 16 13 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 14 C -0.20 -10.21 8.64 22.47 0.19 -10.01 16 15 C 0.10 5.46 5.58 -21.28 -0.12 5.35 16 16 C -0.48 -24.74 9.04 23.46 0.21 -24.53 16 17 H 0.09 4.21 7.91 -2.91 -0.02 4.19 16 18 C 0.04 1.83 5.14 85.35 0.44 2.27 16 19 N -0.80 -39.26 10.95 21.87 0.24 -39.02 16 20 Si 0.99 35.53 29.60 68.60 2.03 37.56 16 21 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 22 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 23 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 24 C -0.25 -12.97 9.73 22.47 0.22 -12.75 16 25 C -0.03 -1.68 9.52 22.25 0.21 -1.47 16 26 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.05 1.34 6.41 -2.38 -0.02 1.33 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 2.01 7.32 -2.39 -0.02 1.99 16 33 H 0.06 1.12 8.12 -2.38 -0.02 1.10 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.39 5.39 9.12 -74.06 -0.68 4.71 16 37 H 0.40 13.65 6.60 -92.71 -0.61 13.04 16 38 H 0.12 4.66 6.37 -2.91 -0.02 4.64 16 39 H 0.11 5.84 6.16 -2.91 -0.02 5.82 16 40 H 0.30 12.96 8.29 -92.71 -0.77 12.19 16 41 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 42 H 0.10 4.93 7.63 -2.91 -0.02 4.91 16 Total: -1.00 -64.34 348.14 -1.20 -65.54 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -0.24 Total: 43.77 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 5.31 Total: -20.03 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -6.35 Total: -82.72 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.95 Total: -44.11 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Total: -64.34 -1.20 -65.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590369652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.943 kcal (2) G-P(sol) polarization free energy of solvation -64.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds