Wall clock time and date at job start Tue Mar 31 2020 02:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00117 * 2 1 4 4 N 1.46497 * 109.47178 * 125.54046 * 3 2 1 5 5 C 1.46501 * 120.00263 * 275.34455 * 4 3 2 6 6 C 1.50702 * 109.47102 * 270.00039 * 5 4 3 7 7 H 1.08003 * 119.99575 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99789 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99917 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99849 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47148 * 59.99602 * 10 8 6 12 12 H 1.48501 * 109.47225 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46909 * 299.99767 * 10 8 6 14 14 C 1.34779 * 119.99682 * 95.34140 * 4 3 2 15 15 O 1.21283 * 119.99634 * 184.70431 * 14 4 3 16 16 C 1.50697 * 120.00291 * 4.70865 * 14 4 3 17 17 C 1.50703 * 115.54926 * 66.67674 * 16 14 4 18 18 O 1.21281 * 120.00011 * 219.75047 * 17 16 14 19 19 N 1.34774 * 119.99852 * 39.74480 * 17 16 14 20 20 C 1.46500 * 119.99742 * 185.06170 * 19 17 16 21 21 C 1.53007 * 117.49905 * 201.17844 * 20 19 17 22 22 C 1.52999 * 117.50070 * 132.55711 * 20 19 17 23 23 C 1.52995 * 117.51958 * 212.37934 * 16 14 4 24 24 C 1.52997 * 60.00066 * 107.48013 * 23 16 14 25 25 H 1.07998 * 120.00198 * 5.03680 * 1 2 3 26 26 H 1.07999 * 120.00085 * 185.03125 * 1 2 3 27 27 H 1.08001 * 120.00424 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47094 * 5.54413 * 3 2 1 29 29 H 1.09001 * 109.47299 * 245.54600 * 3 2 1 30 30 H 1.08997 * 109.46974 * 29.99947 * 5 4 3 31 31 H 1.08998 * 109.46938 * 149.99820 * 5 4 3 32 32 H 0.97011 * 120.00055 * 180.02562 * 9 8 6 33 33 H 0.97001 * 120.00611 * 5.06853 * 19 17 16 34 34 H 1.08995 * 115.56318 * 346.86624 * 20 19 17 35 35 H 1.08998 * 117.49987 * 145.02281 * 21 20 19 36 36 H 1.09000 * 117.49485 * 359.97438 * 21 20 19 37 37 H 1.09002 * 117.49523 * 359.97438 * 22 20 19 38 38 H 1.09000 * 117.52109 * 214.96923 * 22 20 19 39 39 H 1.09005 * 117.49983 * 214.97267 * 23 16 14 40 40 H 1.09001 * 117.49899 * 359.97438 * 23 16 14 41 41 H 1.09004 * 117.49862 * 252.50769 * 24 23 16 42 42 H 1.08996 * 117.51392 * 107.48411 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0029 1.3266 1.1239 5 6 2.5467 1.7433 2.4522 6 6 2.7265 3.2322 2.6009 7 1 3.1397 3.8100 1.7874 8 6 2.3644 3.8563 3.7757 9 7 1.8617 3.1525 4.7664 10 14 2.5866 5.7019 3.9598 11 1 1.7896 6.4025 2.9208 12 1 2.1243 6.1243 5.3063 13 1 4.0222 6.0461 3.7982 14 6 4.2870 0.9628 0.9358 15 8 5.0437 0.8984 1.8814 16 6 4.7826 0.6363 -0.4494 17 6 4.8203 1.7923 -1.4155 18 8 4.4919 1.6277 -2.5713 19 7 5.2190 3.0091 -0.9950 20 6 5.1507 4.1566 -1.9032 21 6 6.0393 5.3615 -1.5874 22 6 4.5278 5.4467 -1.3660 23 6 5.8753 -0.4269 -0.5769 24 6 4.4439 -0.7450 -1.0135 25 1 -0.5400 0.9317 -0.0821 26 1 -0.5400 -0.9317 0.0820 27 1 1.8500 -0.9353 -0.0004 28 1 1.3593 2.1312 0.0993 29 1 2.6136 1.4071 -0.9355 30 1 1.4929 1.4910 2.5701 31 1 3.1310 1.2288 3.2150 32 1 1.6066 3.5917 5.5929 33 1 5.5513 3.1252 -0.0911 34 1 4.9833 3.9162 -2.9531 35 1 6.4565 5.9137 -2.4294 36 1 6.6744 5.3005 -0.7036 37 1 4.1684 5.4415 -0.3369 38 1 3.9507 6.0553 -2.0622 39 1 6.6216 -0.2902 -1.3596 40 1 6.2364 -0.8902 0.3413 41 1 3.8630 -1.4177 -0.3825 42 1 4.2481 -0.8175 -2.0833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590409317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:11 Heat of formation + Delta-G solvation = 6.113358 kcal Electronic energy + Delta-G solvation = -24532.273949 eV Core-core repulsion = 21093.957172 eV Total energy + Delta-G solvation = -3438.316776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60856 -38.74589 -37.19453 -35.93303 -35.41438 -33.19218 -32.70555 -32.08305 -27.96908 -25.82304 -25.17877 -23.26359 -22.41652 -22.37854 -21.47809 -20.67250 -19.87424 -18.69965 -17.43879 -16.60583 -16.48376 -15.86655 -15.58133 -14.82880 -14.77367 -14.54504 -14.31674 -14.23292 -13.96868 -13.46830 -12.86371 -12.72372 -12.52657 -12.21125 -11.75918 -11.58315 -11.52344 -11.36762 -11.32069 -11.06769 -11.00618 -10.89169 -10.68647 -10.55788 -10.41090 -10.21177 -9.91016 -9.72376 -9.11947 -9.01439 -8.71323 -8.49386 -7.79338 -6.10506 -4.15910 2.42279 2.51014 2.98747 3.11887 3.25893 3.31168 3.32603 3.67357 3.87628 4.05110 4.37605 4.65794 4.78557 4.81043 4.88750 4.92869 4.99197 5.00332 5.23918 5.28111 5.42352 5.57448 5.60465 5.68384 5.71609 5.78778 5.86278 5.96450 6.05715 6.12739 6.14112 6.23145 6.53657 6.83813 6.91469 7.04189 7.36736 7.43695 7.52488 7.84724 8.15385 8.19120 8.29504 8.77408 8.93809 9.48916 10.97576 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.007364 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.129092 B = 3801.378103 C = 5127.911544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.134 3.866 4 N -0.579 5.579 5 C 0.246 3.754 6 C -0.528 4.528 7 H 0.056 0.944 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.543 3.457 15 O -0.531 6.531 16 C -0.197 4.197 17 C 0.570 3.430 18 O -0.540 6.540 19 N -0.692 5.692 20 C 0.079 3.921 21 C -0.189 4.189 22 C -0.192 4.192 23 C -0.125 4.125 24 C -0.130 4.130 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.410 0.590 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 -2.623 -13.110 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.182 4.182 3 C 0.010 3.990 4 N -0.309 5.309 5 C 0.128 3.872 6 C -0.567 4.567 7 H 0.074 0.926 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.327 3.673 15 O -0.408 6.408 16 C -0.204 4.204 17 C 0.356 3.644 18 O -0.417 6.417 19 N -0.341 5.341 20 C -0.027 4.027 21 C -0.227 4.227 22 C -0.230 4.230 23 C -0.163 4.163 24 C -0.167 4.167 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.888 -2.731 -13.191 14.020 hybrid contribution 0.080 1.264 0.736 1.464 sum 3.968 -1.467 -12.455 13.154 Atomic orbital electron populations 1.23785 0.95791 1.01804 1.00683 1.23345 0.96283 0.98826 0.99754 1.20598 0.93016 0.95470 0.89875 1.48146 1.07456 1.63202 1.12105 1.19338 0.95543 0.95187 0.77170 1.21328 1.42672 0.92522 1.00147 0.92562 1.24913 0.95030 0.98419 0.95541 1.69919 1.42395 1.35851 1.04855 0.86601 0.78597 0.85171 0.77313 1.20203 1.21131 1.20175 1.18960 0.82820 0.78199 0.87322 1.90692 1.55213 1.52848 1.42043 1.21618 1.10380 0.91932 0.96457 1.19004 0.75647 0.82520 0.87181 1.90668 1.48972 1.83848 1.18240 1.45320 1.64968 1.07099 1.16714 1.21571 1.04690 0.81112 0.95286 1.23357 0.94154 1.01227 1.03971 1.23480 0.95369 1.00376 1.03814 1.23013 0.91882 0.97527 1.03882 1.23083 0.98300 0.92733 1.02592 0.88422 0.88649 0.87700 0.89744 0.90520 0.94711 0.93679 0.92591 0.75432 0.84565 0.87974 0.88361 0.87755 0.88028 0.87796 0.86874 0.87634 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 14.31 29.02 0.42 -2.12 16 2 C -0.16 -2.49 9.73 -36.02 -0.35 -2.84 16 3 C 0.13 2.36 5.62 -5.19 -0.03 2.33 16 4 N -0.58 -12.04 2.44 -176.44 -0.43 -12.47 16 5 C 0.25 6.26 5.22 -5.19 -0.03 6.24 16 6 C -0.53 -14.30 9.39 -34.44 -0.32 -14.63 16 7 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 10 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.54 10.94 6.33 -10.99 -0.07 10.87 16 15 O -0.53 -12.64 16.28 5.56 0.09 -12.54 16 16 C -0.20 -3.17 1.28 -156.82 -0.20 -3.37 16 17 C 0.57 9.34 5.59 -10.99 -0.06 9.28 16 18 O -0.54 -9.51 15.67 5.56 0.09 -9.43 16 19 N -0.69 -10.69 5.44 -53.80 -0.29 -10.98 16 20 C 0.08 1.06 6.42 -67.93 -0.44 0.62 16 21 C -0.19 -2.10 10.45 -26.73 -0.28 -2.38 16 22 C -0.19 -2.43 10.46 -26.73 -0.28 -2.71 16 23 C -0.13 -1.66 9.76 -26.74 -0.26 -1.92 16 24 C -0.13 -1.70 9.25 -26.73 -0.25 -1.95 16 25 H 0.10 1.33 7.86 -52.49 -0.41 0.91 16 26 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.11 1.49 6.81 -52.49 -0.36 1.13 16 28 H 0.08 1.55 7.78 -51.93 -0.40 1.14 16 29 H 0.08 1.31 5.00 -51.93 -0.26 1.05 16 30 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.05 1.29 7.36 -51.93 -0.38 0.91 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.41 6.63 8.36 -40.82 -0.34 6.29 16 34 H 0.14 1.80 7.42 -51.93 -0.39 1.41 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.11 1.52 8.02 -51.93 -0.42 1.10 16 41 H 0.11 1.31 7.10 -51.93 -0.37 0.94 16 42 H 0.11 1.42 7.68 -51.93 -0.40 1.02 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -31.46 359.59 -7.89 -39.34 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.23 Total: 10.60 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.25 Total: -0.93 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.01 Total: -48.59 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.18 Total: -21.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.46 -7.89 -39.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.458 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds