Wall clock time and date at job start Tue Mar 31 2020 02:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00117 * 2 1 4 4 N 1.46497 * 109.47178 * 125.54046 * 3 2 1 5 5 C 1.46501 * 120.00263 * 275.34455 * 4 3 2 6 6 C 1.50702 * 109.47102 * 270.00039 * 5 4 3 7 7 H 1.08003 * 119.99575 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99789 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99917 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99849 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47148 * 59.99602 * 10 8 6 12 12 H 1.48501 * 109.47225 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46909 * 299.99767 * 10 8 6 14 14 C 1.34779 * 119.99682 * 95.34140 * 4 3 2 15 15 O 1.21283 * 119.99634 * 184.70431 * 14 4 3 16 16 C 1.50697 * 120.00291 * 4.70865 * 14 4 3 17 17 C 1.50703 * 115.54926 * 66.67674 * 16 14 4 18 18 O 1.21281 * 120.00011 * 219.75047 * 17 16 14 19 19 N 1.34774 * 119.99852 * 39.74480 * 17 16 14 20 20 C 1.46500 * 119.99742 * 185.06170 * 19 17 16 21 21 C 1.53007 * 117.49905 * 201.17844 * 20 19 17 22 22 C 1.52999 * 117.50070 * 132.55711 * 20 19 17 23 23 C 1.52995 * 117.51958 * 212.37934 * 16 14 4 24 24 C 1.52997 * 60.00066 * 107.48013 * 23 16 14 25 25 H 1.07998 * 120.00198 * 5.03680 * 1 2 3 26 26 H 1.07999 * 120.00085 * 185.03125 * 1 2 3 27 27 H 1.08001 * 120.00424 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47094 * 5.54413 * 3 2 1 29 29 H 1.09001 * 109.47299 * 245.54600 * 3 2 1 30 30 H 1.08997 * 109.46974 * 29.99947 * 5 4 3 31 31 H 1.08998 * 109.46938 * 149.99820 * 5 4 3 32 32 H 0.97011 * 120.00055 * 180.02562 * 9 8 6 33 33 H 0.97001 * 120.00611 * 5.06853 * 19 17 16 34 34 H 1.08995 * 115.56318 * 346.86624 * 20 19 17 35 35 H 1.08998 * 117.49987 * 145.02281 * 21 20 19 36 36 H 1.09000 * 117.49485 * 359.97438 * 21 20 19 37 37 H 1.09002 * 117.49523 * 359.97438 * 22 20 19 38 38 H 1.09000 * 117.52109 * 214.96923 * 22 20 19 39 39 H 1.09005 * 117.49983 * 214.97267 * 23 16 14 40 40 H 1.09001 * 117.49899 * 359.97438 * 23 16 14 41 41 H 1.09004 * 117.49862 * 252.50769 * 24 23 16 42 42 H 1.08996 * 117.51392 * 107.48411 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0029 1.3266 1.1239 5 6 2.5467 1.7433 2.4522 6 6 2.7265 3.2322 2.6009 7 1 3.1397 3.8100 1.7874 8 6 2.3644 3.8563 3.7757 9 7 1.8617 3.1525 4.7664 10 14 2.5866 5.7019 3.9598 11 1 1.7896 6.4025 2.9208 12 1 2.1243 6.1243 5.3063 13 1 4.0222 6.0461 3.7982 14 6 4.2870 0.9628 0.9358 15 8 5.0437 0.8984 1.8814 16 6 4.7826 0.6363 -0.4494 17 6 4.8203 1.7923 -1.4155 18 8 4.4919 1.6277 -2.5713 19 7 5.2190 3.0091 -0.9950 20 6 5.1507 4.1566 -1.9032 21 6 6.0393 5.3615 -1.5874 22 6 4.5278 5.4467 -1.3660 23 6 5.8753 -0.4269 -0.5769 24 6 4.4439 -0.7450 -1.0135 25 1 -0.5400 0.9317 -0.0821 26 1 -0.5400 -0.9317 0.0820 27 1 1.8500 -0.9353 -0.0004 28 1 1.3593 2.1312 0.0993 29 1 2.6136 1.4071 -0.9355 30 1 1.4929 1.4910 2.5701 31 1 3.1310 1.2288 3.2150 32 1 1.6066 3.5917 5.5929 33 1 5.5513 3.1252 -0.0911 34 1 4.9833 3.9162 -2.9531 35 1 6.4565 5.9137 -2.4294 36 1 6.6744 5.3005 -0.7036 37 1 4.1684 5.4415 -0.3369 38 1 3.9507 6.0553 -2.0622 39 1 6.6216 -0.2902 -1.3596 40 1 6.2364 -0.8902 0.3413 41 1 3.8630 -1.4177 -0.3825 42 1 4.2481 -0.8175 -2.0833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590409317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:11 Heat of formation + Delta-G solvation = -13.473930 kcal Electronic energy + Delta-G solvation = -24533.123317 eV Core-core repulsion = 21093.957172 eV Total energy + Delta-G solvation = -3439.166145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96456 -40.19057 -38.32707 -37.42840 -36.76085 -35.07346 -33.90725 -33.68973 -29.89022 -27.18957 -26.73876 -24.97894 -23.51903 -23.32861 -22.78320 -22.00970 -21.12344 -20.03921 -18.96676 -18.56418 -17.70073 -17.48844 -16.97499 -16.49078 -16.14847 -15.82217 -15.65488 -15.43219 -15.41069 -14.83925 -14.29029 -14.25486 -14.01532 -13.73838 -13.38287 -13.08696 -12.95116 -12.63518 -12.58349 -12.54351 -12.44073 -12.27607 -12.21540 -12.14853 -11.73290 -11.65583 -11.48814 -11.16900 -10.64846 -10.64034 -10.31682 -9.85288 -9.56709 -8.23290 -6.37509 1.18062 1.27626 1.35947 1.38852 1.45648 1.53053 1.90612 2.20186 2.38148 2.73168 2.94332 3.07147 3.41985 3.46821 3.67746 3.75943 3.80514 3.99405 4.00466 4.03388 4.15177 4.33659 4.53361 4.63071 4.71341 4.72015 4.75005 4.83475 4.97356 4.99039 5.02708 5.11210 5.16028 5.20388 5.38876 5.45926 5.66675 5.72498 5.90019 6.03292 6.25174 6.58193 6.70592 6.95119 7.18904 7.35936 8.84116 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.007364 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.129092 B = 3801.378103 C = 5127.911544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.184 4.184 3 C 0.139 3.861 4 N -0.582 5.582 5 C 0.264 3.736 6 C -0.539 4.539 7 H 0.056 0.944 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.544 3.456 15 O -0.576 6.576 16 C -0.216 4.216 17 C 0.572 3.428 18 O -0.553 6.553 19 N -0.694 5.694 20 C 0.061 3.939 21 C -0.165 4.165 22 C -0.198 4.198 23 C -0.111 4.111 24 C -0.110 4.110 25 H 0.097 0.903 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.021 0.979 31 H 0.004 0.996 32 H 0.267 0.733 33 H 0.404 0.596 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 -2.137 -15.051 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.203 4.203 3 C 0.016 3.984 4 N -0.311 5.311 5 C 0.144 3.856 6 C -0.577 4.577 7 H 0.074 0.926 8 C -0.187 4.187 9 N -0.565 5.565 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.198 1.198 14 C 0.331 3.669 15 O -0.456 6.456 16 C -0.222 4.222 17 C 0.358 3.642 18 O -0.432 6.432 19 N -0.342 5.342 20 C -0.044 4.044 21 C -0.203 4.203 22 C -0.236 4.236 23 C -0.149 4.149 24 C -0.147 4.147 25 H 0.116 0.884 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.039 0.961 31 H 0.022 0.978 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.070 -2.241 -15.178 15.873 hybrid contribution -0.017 1.085 1.349 1.731 sum 4.053 -1.156 -13.829 14.457 Atomic orbital electron populations 1.24046 0.95366 1.03073 0.97944 1.23278 0.96830 0.97996 1.02192 1.20644 0.92382 0.96633 0.88724 1.48062 1.08614 1.63137 1.11284 1.18776 0.93857 0.94192 0.78813 1.21582 1.42483 0.93350 1.00325 0.92620 1.25788 0.94566 1.03241 0.95140 1.70044 1.43275 1.37835 1.05381 0.85553 0.78732 0.79436 0.77662 1.18778 1.20630 1.19783 1.19532 0.81914 0.76814 0.88663 1.90658 1.56183 1.54651 1.44120 1.21461 1.13440 0.93414 0.93934 1.18971 0.75507 0.82710 0.86970 1.90653 1.49878 1.84031 1.18608 1.45433 1.64463 1.07639 1.16669 1.21774 1.06748 0.80907 0.95016 1.23447 0.93028 0.99141 1.04687 1.23471 0.97082 1.00401 1.02686 1.23164 0.92292 0.95081 1.04341 1.23227 0.98125 0.89998 1.03359 0.88433 0.86051 0.86396 0.91041 0.89833 0.96105 0.97796 0.92429 0.76176 0.84224 0.85084 0.88601 0.90422 0.86126 0.85586 0.87178 0.86864 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.33 14.31 67.79 0.97 -3.36 16 2 C -0.18 -5.44 9.73 25.65 0.25 -5.19 16 3 C 0.14 4.90 5.62 85.63 0.48 5.38 16 4 N -0.58 -24.88 2.44 -830.51 -2.03 -26.91 16 5 C 0.26 14.04 5.22 85.63 0.45 14.49 16 6 C -0.54 -30.04 9.39 25.60 0.24 -29.80 16 7 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.68 5.46 84.66 0.46 1.14 16 9 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 10 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 11 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 C 0.54 22.42 6.33 87.66 0.55 22.97 16 15 O -0.58 -28.49 16.28 -3.04 -0.05 -28.54 16 16 C -0.22 -6.80 1.28 -53.68 -0.07 -6.87 16 17 C 0.57 18.27 5.59 87.66 0.49 18.76 16 18 O -0.55 -18.68 15.67 -3.03 -0.05 -18.73 16 19 N -0.69 -21.27 5.44 -442.53 -2.41 -23.68 16 20 C 0.06 1.55 6.42 44.99 0.29 1.84 16 21 C -0.17 -3.34 10.45 30.60 0.32 -3.02 16 22 C -0.20 -4.81 10.46 30.59 0.32 -4.49 16 23 C -0.11 -2.77 9.76 30.59 0.30 -2.47 16 24 C -0.11 -2.66 9.25 30.59 0.28 -2.38 16 25 H 0.10 2.53 7.86 -2.91 -0.02 2.50 16 26 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 27 H 0.12 3.16 6.81 -2.91 -0.02 3.14 16 28 H 0.07 2.67 7.78 -2.39 -0.02 2.65 16 29 H 0.08 2.83 5.00 -2.39 -0.01 2.82 16 30 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 31 H 0.00 0.24 7.36 -2.39 -0.02 0.22 16 32 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 33 H 0.40 13.29 8.36 -92.71 -0.78 12.51 16 34 H 0.14 3.48 7.42 -2.39 -0.02 3.46 16 35 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.13 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.11 2.84 8.02 -2.39 -0.02 2.82 16 41 H 0.11 2.58 7.10 -2.38 -0.02 2.56 16 42 H 0.13 2.82 7.68 -2.39 -0.02 2.80 16 Total: -1.00 -69.56 359.59 3.36 -66.20 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.25 Total: 33.67 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 5.34 Total: 7.00 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -4.15 Total: -105.29 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -0.10 Total: -47.26 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -69.56 3.36 -66.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.723 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds