Wall clock time and date at job start Tue Mar 31 2020 03:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 110.99852 * 2 1 4 4 C 1.50698 * 109.47521 * 293.95238 * 3 2 1 5 5 O 1.21298 * 119.99493 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00427 * 180.02562 * 4 3 2 7 7 C 1.37094 * 119.99912 * 180.02562 * 6 4 3 8 8 H 1.07999 * 120.00501 * 0.02562 * 7 6 4 9 9 C 1.38953 * 119.99847 * 180.02562 * 7 6 4 10 10 N 1.31412 * 119.99835 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00122 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47198 * 89.99775 * 11 9 7 13 13 H 1.48502 * 109.47001 * 210.00070 * 11 9 7 14 14 H 1.48498 * 109.46870 * 330.00039 * 11 9 7 15 15 C 1.46905 * 110.99751 * 123.95385 * 2 1 3 16 16 H 1.09007 * 109.46456 * 187.19560 * 15 2 1 17 17 C 1.52999 * 109.47239 * 307.19817 * 15 2 1 18 18 O 1.42896 * 109.47025 * 66.72363 * 17 15 2 19 19 C 1.53000 * 109.46904 * 67.19987 * 15 2 1 20 20 C 1.50696 * 109.47143 * 64.99962 * 19 15 2 21 21 C 1.38239 * 119.99764 * 269.71797 * 20 19 15 22 22 C 1.38239 * 119.99720 * 180.32522 * 21 20 19 23 23 C 1.38235 * 120.00052 * 359.95591 * 22 21 20 24 24 C 1.38233 * 120.00154 * 0.02562 * 23 22 21 25 25 C 1.38232 * 119.99848 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46837 * 305.34274 * 1 2 3 27 27 H 1.08997 * 109.47079 * 65.34888 * 1 2 3 28 28 H 1.08997 * 109.47181 * 185.35018 * 1 2 3 29 29 H 1.09001 * 109.47189 * 53.96017 * 3 2 1 30 30 H 1.09003 * 109.47111 * 173.95302 * 3 2 1 31 31 H 0.96996 * 119.99635 * 0.02562 * 6 4 3 32 32 H 0.96998 * 119.99800 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.46740 * 186.72688 * 17 15 2 34 34 H 1.09006 * 109.46917 * 306.72087 * 17 15 2 35 35 H 0.96696 * 113.99756 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.47228 * 304.99323 * 19 15 2 37 37 H 1.09005 * 109.46803 * 184.99866 * 19 15 2 38 38 H 1.07999 * 119.99935 * 0.28626 * 21 20 19 39 39 H 1.07999 * 119.99472 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99267 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.99992 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.99740 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 8 1.0047 1.4455 -2.1408 6 7 2.0189 3.3199 -1.5237 7 6 1.6923 3.9347 -2.7047 8 1 1.1286 3.3994 -3.4544 9 6 2.0866 5.2467 -2.9372 10 7 2.7720 5.8983 -2.0247 11 14 1.6410 6.0847 -4.5461 12 1 0.3295 6.7663 -4.4025 13 1 2.6839 7.0849 -4.8886 14 1 1.5554 5.0691 -5.6260 15 6 1.9955 -0.7660 1.1376 16 1 3.0776 -0.6446 1.1878 17 6 1.3640 -0.2534 2.4336 18 8 -0.0329 -0.5542 2.4343 19 6 1.6563 -2.2469 0.9560 20 6 2.3779 -2.7827 -0.2536 21 6 1.7736 -2.7357 -1.4960 22 6 2.4328 -3.2334 -2.6045 23 6 3.6966 -3.7773 -2.4707 24 6 4.3010 -3.8240 -1.2284 25 6 3.6414 -3.3272 -0.1198 26 1 -0.3633 0.5945 0.8383 27 1 -0.3633 0.4286 -0.9340 28 1 -0.3633 -1.0232 0.0958 29 1 1.5612 1.9273 0.8310 30 1 3.0797 1.3444 0.1083 31 1 2.5249 3.8008 -0.8502 32 1 3.0475 6.8140 -2.1872 33 1 1.8404 -0.7375 3.2860 34 1 1.5035 0.8254 2.5037 35 1 -0.4986 -0.2577 3.2281 36 1 0.5811 -2.3589 0.8169 37 1 1.9680 -2.8021 1.8407 38 1 0.7863 -2.3107 -1.6005 39 1 1.9605 -3.1970 -3.5751 40 1 4.2117 -4.1657 -3.3369 41 1 5.2882 -4.2493 -1.1238 42 1 4.1135 -3.3641 0.8509 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595598784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:41 Heat of formation + Delta-G solvation = -49.225791 kcal Electronic energy + Delta-G solvation = -23792.483650 eV Core-core repulsion = 20351.767188 eV Total energy + Delta-G solvation = -3440.716462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.64734 -38.53742 -37.57090 -35.34750 -33.85094 -32.66779 -31.17015 -30.60432 -29.52038 -27.74436 -25.92760 -24.95273 -23.60499 -22.28011 -21.33755 -19.61070 -19.05590 -17.82211 -17.58012 -16.63709 -16.19871 -15.29076 -15.13947 -15.05047 -14.61638 -14.48341 -14.26071 -13.96707 -13.63166 -13.18769 -13.06520 -12.79777 -12.57524 -12.44361 -12.03388 -11.75845 -11.59867 -11.41249 -11.36347 -11.08737 -10.99834 -10.88772 -10.66220 -10.42886 -10.35729 -10.16973 -9.90566 -9.40997 -8.62715 -8.43486 -8.29526 -7.90651 -7.60438 -6.36731 -3.76941 1.63211 1.71453 3.20865 3.28984 3.35299 3.98258 4.01436 4.05634 4.23207 4.40695 4.82988 5.03981 5.07777 5.16235 5.23438 5.28208 5.29952 5.31015 5.41829 5.47891 5.61719 5.72013 5.77779 5.85052 5.94562 5.98842 6.13399 6.17343 6.31439 6.35647 6.38861 6.39582 6.70522 6.79862 6.85575 6.96737 7.29891 7.47097 7.53321 7.57383 7.60557 8.12682 8.68608 9.24219 9.61176 10.13996 10.81378 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.004293 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.752546 B = 6521.067129 C = 7640.463640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.502 5.502 3 C 0.044 3.956 4 C 0.448 3.552 5 O -0.574 6.574 6 N -0.568 5.568 7 C -0.295 4.295 8 H 0.102 0.898 9 C 0.021 3.979 10 N -0.905 5.905 11 Si 0.929 3.071 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.089 3.911 16 H 0.090 0.910 17 C 0.042 3.958 18 O -0.558 6.558 19 C -0.066 4.066 20 C -0.067 4.067 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.126 4.126 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.391 0.609 32 H 0.270 0.730 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.368 0.632 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 -15.127 10.047 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.225 5.225 3 C -0.087 4.087 4 C 0.234 3.766 5 O -0.457 6.457 6 N -0.205 5.205 7 C -0.425 4.425 8 H 0.120 0.880 9 C -0.180 4.180 10 N -0.546 5.546 11 Si 0.756 3.244 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.020 4.020 16 H 0.108 0.892 17 C -0.037 4.037 18 O -0.363 6.363 19 C -0.103 4.103 20 C -0.067 4.067 21 C -0.098 4.098 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.144 4.144 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.224 0.776 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.215 0.785 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.469 -15.825 8.433 17.937 hybrid contribution -0.018 1.654 0.989 1.927 sum 0.451 -14.171 9.422 17.023 Atomic orbital electron populations 1.22615 0.86051 1.01370 1.01808 1.61765 1.09414 1.12008 1.39317 1.21899 1.00294 0.89521 0.96990 1.19730 0.85182 0.82817 0.88912 1.90480 1.43600 1.64570 1.47086 1.41861 1.49723 1.10863 1.18075 1.19683 1.32615 0.95417 0.94778 0.87999 1.25233 0.96946 0.96668 0.99164 1.69614 1.38334 1.12204 1.34482 0.85878 0.77957 0.78909 0.81668 1.20500 1.20988 1.19443 1.21947 0.98817 0.93981 0.87298 0.89212 1.22977 0.82465 0.99204 0.99083 1.86747 1.20609 1.84053 1.44853 1.20547 1.01142 0.93626 0.94990 1.19713 0.94436 0.97370 0.95186 1.21040 1.00465 0.96539 0.91791 1.21153 0.95246 0.98614 0.98731 1.21053 0.95694 1.00823 0.97172 1.20987 0.99524 1.01066 0.93037 1.20945 0.94940 1.00148 0.98353 0.94803 0.89950 0.92185 0.93809 0.89887 0.77633 0.91998 0.93705 0.93473 0.78490 0.89822 0.91367 0.85912 0.86486 0.86805 0.86821 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 7.58 60.07 0.46 0.95 16 2 N -0.50 -8.40 3.83 -236.33 -0.91 -9.31 16 3 C 0.04 0.81 5.05 -4.98 -0.03 0.79 16 4 C 0.45 10.76 7.54 -10.99 -0.08 10.68 16 5 O -0.57 -15.60 13.88 5.54 0.08 -15.52 16 6 N -0.57 -14.64 5.29 -10.96 -0.06 -14.70 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 10 N -0.90 -24.94 13.05 55.50 0.72 -24.21 16 11 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.09 1.16 2.27 -67.71 -0.15 1.00 16 16 H 0.09 1.14 7.91 -51.92 -0.41 0.72 16 17 C 0.04 0.46 6.29 37.16 0.23 0.69 16 18 O -0.56 -6.00 9.26 -35.23 -0.33 -6.32 16 19 C -0.07 -0.80 4.47 -27.88 -0.12 -0.93 16 20 C -0.07 -0.92 4.95 -104.62 -0.52 -1.44 16 21 C -0.08 -1.22 9.32 -39.58 -0.37 -1.59 16 22 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 23 C -0.13 -1.70 10.05 -39.58 -0.40 -2.09 16 24 C -0.13 -1.59 10.05 -39.59 -0.40 -1.99 16 25 C -0.13 -1.58 9.70 -39.58 -0.38 -1.97 16 26 H 0.03 0.55 6.00 -51.93 -0.31 0.24 16 27 H 0.08 1.71 5.99 -51.93 -0.31 1.40 16 28 H 0.06 0.94 5.79 -51.93 -0.30 0.64 16 29 H 0.04 0.74 6.90 -51.93 -0.36 0.38 16 30 H 0.08 1.40 7.92 -51.93 -0.41 0.99 16 31 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.53 6.70 -51.93 -0.35 0.18 16 35 H 0.37 2.48 9.12 45.56 0.42 2.89 16 36 H 0.08 1.10 5.74 -51.93 -0.30 0.80 16 37 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 38 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -32.31 340.60 -7.90 -40.22 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -5.12 Total: 14.41 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -2.40 Total: -6.04 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.24 Total: -48.22 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.25 Total: -21.84 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.31 -7.90 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595598784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.007 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds