Wall clock time and date at job start Tue Mar 31 2020 03:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 110.99852 * 2 1 4 4 C 1.50698 * 109.47521 * 293.95238 * 3 2 1 5 5 O 1.21298 * 119.99493 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00427 * 180.02562 * 4 3 2 7 7 C 1.37094 * 119.99912 * 180.02562 * 6 4 3 8 8 H 1.07999 * 120.00501 * 0.02562 * 7 6 4 9 9 C 1.38953 * 119.99847 * 180.02562 * 7 6 4 10 10 N 1.31412 * 119.99835 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00122 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47198 * 89.99775 * 11 9 7 13 13 H 1.48502 * 109.47001 * 210.00070 * 11 9 7 14 14 H 1.48498 * 109.46870 * 330.00039 * 11 9 7 15 15 C 1.46905 * 110.99751 * 123.95385 * 2 1 3 16 16 H 1.09007 * 109.46456 * 187.19560 * 15 2 1 17 17 C 1.52999 * 109.47239 * 307.19817 * 15 2 1 18 18 O 1.42896 * 109.47025 * 66.72363 * 17 15 2 19 19 C 1.53000 * 109.46904 * 67.19987 * 15 2 1 20 20 C 1.50696 * 109.47143 * 64.99962 * 19 15 2 21 21 C 1.38239 * 119.99764 * 269.71797 * 20 19 15 22 22 C 1.38239 * 119.99720 * 180.32522 * 21 20 19 23 23 C 1.38235 * 120.00052 * 359.95591 * 22 21 20 24 24 C 1.38233 * 120.00154 * 0.02562 * 23 22 21 25 25 C 1.38232 * 119.99848 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46837 * 305.34274 * 1 2 3 27 27 H 1.08997 * 109.47079 * 65.34888 * 1 2 3 28 28 H 1.08997 * 109.47181 * 185.35018 * 1 2 3 29 29 H 1.09001 * 109.47189 * 53.96017 * 3 2 1 30 30 H 1.09003 * 109.47111 * 173.95302 * 3 2 1 31 31 H 0.96996 * 119.99635 * 0.02562 * 6 4 3 32 32 H 0.96998 * 119.99800 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.46740 * 186.72688 * 17 15 2 34 34 H 1.09006 * 109.46917 * 306.72087 * 17 15 2 35 35 H 0.96696 * 113.99756 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.47228 * 304.99323 * 19 15 2 37 37 H 1.09005 * 109.46803 * 184.99866 * 19 15 2 38 38 H 1.07999 * 119.99935 * 0.28626 * 21 20 19 39 39 H 1.07999 * 119.99472 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99267 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.99992 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.99740 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 8 1.0047 1.4455 -2.1408 6 7 2.0189 3.3199 -1.5237 7 6 1.6923 3.9347 -2.7047 8 1 1.1286 3.3994 -3.4544 9 6 2.0866 5.2467 -2.9372 10 7 2.7720 5.8983 -2.0247 11 14 1.6410 6.0847 -4.5461 12 1 0.3295 6.7663 -4.4025 13 1 2.6839 7.0849 -4.8886 14 1 1.5554 5.0691 -5.6260 15 6 1.9955 -0.7660 1.1376 16 1 3.0776 -0.6446 1.1878 17 6 1.3640 -0.2534 2.4336 18 8 -0.0329 -0.5542 2.4343 19 6 1.6563 -2.2469 0.9560 20 6 2.3779 -2.7827 -0.2536 21 6 1.7736 -2.7357 -1.4960 22 6 2.4328 -3.2334 -2.6045 23 6 3.6966 -3.7773 -2.4707 24 6 4.3010 -3.8240 -1.2284 25 6 3.6414 -3.3272 -0.1198 26 1 -0.3633 0.5945 0.8383 27 1 -0.3633 0.4286 -0.9340 28 1 -0.3633 -1.0232 0.0958 29 1 1.5612 1.9273 0.8310 30 1 3.0797 1.3444 0.1083 31 1 2.5249 3.8008 -0.8502 32 1 3.0475 6.8140 -2.1872 33 1 1.8404 -0.7375 3.2860 34 1 1.5035 0.8254 2.5037 35 1 -0.4986 -0.2577 3.2281 36 1 0.5811 -2.3589 0.8169 37 1 1.9680 -2.8021 1.8407 38 1 0.7863 -2.3107 -1.6005 39 1 1.9605 -3.1970 -3.5751 40 1 4.2117 -4.1657 -3.3369 41 1 5.2882 -4.2493 -1.1238 42 1 4.1135 -3.3641 0.8509 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595598784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:40 Heat of formation + Delta-G solvation = -72.591115 kcal Electronic energy + Delta-G solvation = -23793.496846 eV Core-core repulsion = 20351.767188 eV Total energy + Delta-G solvation = -3441.729659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85463 -39.93767 -38.93717 -36.45312 -35.79917 -33.83167 -33.23151 -31.62374 -30.59249 -29.26519 -27.12520 -26.51680 -25.09046 -23.30697 -22.40382 -21.05437 -20.56048 -19.82028 -18.48034 -17.95554 -17.43381 -16.70751 -16.54941 -16.28816 -16.09922 -15.87549 -15.64331 -15.32077 -15.08384 -14.59585 -14.21908 -14.07615 -13.74671 -13.56159 -13.48279 -13.32469 -13.03418 -12.78892 -12.62372 -12.55219 -12.41464 -12.28206 -12.12801 -12.02819 -11.69023 -11.48930 -11.44201 -10.75810 -10.24773 -9.97534 -9.66245 -9.41090 -8.92321 -8.44988 -5.93059 0.60947 0.67309 1.37623 1.40713 1.53616 2.09484 2.29265 2.82379 3.02279 3.21900 3.41639 3.59121 3.90037 4.10050 4.13413 4.24105 4.28982 4.31894 4.38409 4.45615 4.50258 4.57767 4.61418 4.67718 4.78475 4.81515 4.88465 4.99427 5.02175 5.15371 5.31048 5.32703 5.41015 5.46109 5.70195 5.76829 5.90457 5.97271 6.18580 6.28943 6.37663 6.64147 6.95240 7.15913 7.59758 8.16986 8.72672 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.004293 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.752546 B = 6521.067129 C = 7640.463640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.519 5.519 3 C 0.058 3.942 4 C 0.443 3.557 5 O -0.611 6.611 6 N -0.578 5.578 7 C -0.330 4.330 8 H 0.076 0.924 9 C -0.013 4.013 10 N -0.922 5.922 11 Si 0.991 3.009 12 H -0.271 1.271 13 H -0.270 1.270 14 H -0.275 1.275 15 C 0.086 3.914 16 H 0.100 0.900 17 C 0.048 3.952 18 O -0.575 6.575 19 C -0.058 4.058 20 C -0.076 4.076 21 C -0.106 4.106 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.130 4.130 25 C -0.127 4.127 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.395 0.605 32 H 0.277 0.723 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.388 0.612 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 -15.598 11.950 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.243 5.243 3 C -0.073 4.073 4 C 0.231 3.769 5 O -0.497 6.497 6 N -0.216 5.216 7 C -0.459 4.459 8 H 0.094 0.906 9 C -0.212 4.212 10 N -0.563 5.563 11 Si 0.815 3.185 12 H -0.196 1.196 13 H -0.195 1.195 14 H -0.200 1.200 15 C -0.022 4.022 16 H 0.118 0.882 17 C -0.031 4.031 18 O -0.383 6.383 19 C -0.095 4.095 20 C -0.076 4.076 21 C -0.124 4.124 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.148 4.148 25 C -0.145 4.145 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.228 0.772 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.922 -16.297 10.380 19.417 hybrid contribution -0.472 1.716 0.423 1.829 sum 1.450 -14.581 10.802 18.204 Atomic orbital electron populations 1.22351 0.86691 1.01589 0.99529 1.61664 1.08983 1.11252 1.42353 1.21740 1.01532 0.90245 0.93775 1.20813 0.83524 0.82139 0.90461 1.90467 1.44868 1.65302 1.49046 1.41928 1.50328 1.11655 1.17645 1.19619 1.34170 0.96413 0.95722 0.90603 1.25989 0.96350 0.96585 1.02303 1.69672 1.38294 1.12638 1.35744 0.84960 0.78265 0.77791 0.77514 1.19629 1.19466 1.19985 1.22066 0.99414 0.93668 0.87058 0.88222 1.22859 0.82619 0.99087 0.98550 1.86675 1.20872 1.84209 1.46556 1.20520 1.00176 0.93385 0.95431 1.19928 0.95195 0.97484 0.94949 1.21040 1.00130 0.98028 0.93251 1.21318 0.96366 0.99642 0.98679 1.21339 0.95143 1.00542 0.98606 1.21395 1.00602 1.00246 0.92542 1.21304 0.94292 0.99059 0.99811 0.93987 0.94574 0.91270 0.91843 0.87922 0.77168 0.91386 0.90601 0.93845 0.76277 0.91192 0.88473 0.88116 0.86692 0.84942 0.83983 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.60 7.58 127.69 0.97 2.56 16 2 N -0.52 -17.12 3.83 -901.60 -3.46 -20.58 16 3 C 0.06 2.09 5.05 85.56 0.43 2.52 16 4 C 0.44 21.83 7.54 87.66 0.66 22.49 16 5 O -0.61 -34.86 13.88 -3.08 -0.04 -34.91 16 6 N -0.58 -30.48 5.29 -306.98 -1.62 -32.11 16 7 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 10 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 11 Si 0.99 43.91 29.55 68.60 2.03 45.93 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 15 C 0.09 2.03 2.27 44.91 0.10 2.13 16 16 H 0.10 2.17 7.91 -2.38 -0.02 2.16 16 17 C 0.05 0.87 6.29 71.98 0.45 1.33 16 18 O -0.58 -10.91 9.26 -148.98 -1.38 -12.29 16 19 C -0.06 -1.29 4.47 29.85 0.13 -1.16 16 20 C -0.08 -1.99 4.95 -19.87 -0.10 -2.08 16 21 C -0.11 -3.34 9.32 22.27 0.21 -3.13 16 22 C -0.14 -4.23 10.05 22.27 0.22 -4.01 16 23 C -0.14 -3.51 10.05 22.27 0.22 -3.28 16 24 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 25 C -0.13 -2.84 9.70 22.27 0.22 -2.63 16 26 H 0.04 1.36 6.00 -2.39 -0.01 1.35 16 27 H 0.04 1.58 5.99 -2.39 -0.01 1.56 16 28 H 0.07 2.23 5.79 -2.39 -0.01 2.22 16 29 H 0.06 2.04 6.90 -2.39 -0.02 2.03 16 30 H 0.10 3.29 7.92 -2.39 -0.02 3.27 16 31 H 0.39 19.76 7.90 -92.71 -0.73 19.02 16 32 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.04 0.83 6.70 -2.38 -0.02 0.82 16 35 H 0.39 4.12 9.12 -74.06 -0.68 3.44 16 36 H 0.07 1.77 5.74 -2.39 -0.01 1.75 16 37 H 0.10 1.62 8.09 -2.38 -0.02 1.60 16 38 H 0.10 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.11 3.27 8.06 -2.91 -0.02 3.25 16 40 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 42 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -72.04 340.60 0.47 -71.57 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -0.36 Total: 39.21 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.03 Total: -6.55 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.80 Total: -102.96 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -1.42 Total: -47.19 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.04 0.47 -71.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595598784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.026 kcal (2) G-P(sol) polarization free energy of solvation -72.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds