Wall clock time and date at job start Tue Mar 31 2020 03:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35121 * 125.55416 * 2 1 4 4 C 1.40981 * 108.24173 * 180.26747 * 3 2 1 5 5 N 1.33304 * 126.36287 * 179.73662 * 4 3 2 6 6 C 1.32913 * 119.99556 * 359.97438 * 5 4 3 7 7 O 1.21594 * 119.99980 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00143 * 179.97438 * 6 5 4 9 9 N 1.46902 * 115.54978 * 9.70080 * 8 6 5 10 10 C 1.46902 * 111.00018 * 65.93480 * 9 8 6 11 11 C 1.46896 * 111.00221 * 189.88995 * 9 8 6 12 12 C 1.53006 * 117.50257 * 223.99518 * 8 6 5 13 13 C 1.52993 * 117.50284 * 155.37011 * 8 6 5 14 14 N 1.37287 * 107.28597 * 359.73207 * 4 3 2 15 15 H 0.96998 * 126.35044 * 180.02562 * 14 4 3 16 16 N 1.36339 * 125.54968 * 179.80537 * 2 1 3 17 17 C 1.46503 * 125.86062 * 359.97438 * 16 2 1 18 18 C 1.50704 * 109.47217 * 84.71840 * 17 16 2 19 19 H 1.08005 * 119.99885 * 0.27629 * 18 17 16 20 20 C 1.37872 * 120.00003 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00047 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00304 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47235 * 89.99428 * 22 20 18 24 24 H 1.48496 * 109.47142 * 209.99826 * 22 20 18 25 25 H 1.48505 * 109.46695 * 329.99799 * 22 20 18 26 26 H 1.09004 * 109.47060 * 270.19821 * 1 2 3 27 27 H 1.09001 * 109.47222 * 30.19306 * 1 2 3 28 28 H 1.08999 * 109.47628 * 150.19783 * 1 2 3 29 29 H 1.08004 * 125.88069 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.47315 * 64.88069 * 10 9 8 31 31 H 1.08997 * 109.47064 * 184.88407 * 10 9 8 32 32 H 1.09002 * 109.46883 * 304.87793 * 10 9 8 33 33 H 1.08995 * 109.47629 * 59.99636 * 11 9 8 34 34 H 1.09004 * 109.47329 * 180.02562 * 11 9 8 35 35 H 1.09005 * 109.47094 * 299.99518 * 11 9 8 36 36 H 1.08998 * 117.49600 * 359.97438 * 12 8 6 37 37 H 1.08999 * 117.50103 * 145.01937 * 12 8 6 38 38 H 1.09003 * 117.50527 * 214.98346 * 13 8 6 39 39 H 1.09000 * 117.49624 * 359.97438 * 13 8 6 40 40 H 1.08997 * 109.47523 * 324.71675 * 17 16 2 41 41 H 1.09001 * 109.46813 * 204.71468 * 17 16 2 42 42 H 0.96999 * 120.00308 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0993 0.0000 4 6 3.6386 0.6798 -0.0063 5 7 4.7125 1.4694 -0.0131 6 6 4.5660 2.7904 -0.0151 7 8 3.4524 3.2786 -0.0102 8 6 5.7800 3.6832 -0.0223 9 7 7.0634 3.0057 -0.2500 10 6 7.1270 2.4399 -1.6042 11 6 8.1900 3.9164 -0.0065 12 6 5.7750 4.8902 0.9180 13 6 5.6158 5.0944 -0.5899 14 7 3.6380 -0.6931 -0.0038 15 1 4.4189 -1.2684 -0.0065 16 7 2.2996 -1.1093 0.0038 17 6 1.8326 -2.4978 0.0090 18 6 1.5480 -2.9375 -1.4041 19 1 1.7041 -2.2526 -2.2245 20 6 1.0943 -4.2160 -1.6501 21 7 0.8464 -4.5998 -2.8834 22 14 0.8317 -5.4030 -0.2319 23 1 -0.5593 -5.2731 0.2713 24 1 1.0605 -6.7932 -0.7012 25 1 1.7853 -5.0864 0.8616 26 1 -0.3633 0.0036 1.0277 27 1 -0.3634 0.8883 -0.5168 28 1 -0.3634 -0.8917 -0.5107 29 1 1.9488 2.1231 0.0004 30 1 7.1060 3.2469 -2.3365 31 1 8.0497 1.8706 -1.7171 32 1 6.2725 1.7822 -1.7636 33 1 8.1579 4.2665 1.0252 34 1 9.1278 3.3895 -0.1827 35 1 8.1204 4.7691 -0.6819 36 1 4.8934 5.0388 1.5415 37 1 6.7240 5.1817 1.3680 38 1 6.4601 5.5204 -1.1320 39 1 4.6297 5.3770 -0.9586 40 1 0.9219 -2.5727 0.6032 41 1 2.6018 -3.1382 0.4408 42 1 0.5268 -5.4991 -3.0565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597460649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:16 Heat of formation + Delta-G solvation = 91.439553 kcal Electronic energy + Delta-G solvation = -23467.853137 eV Core-core repulsion = 20065.529133 eV Total energy + Delta-G solvation = -3402.324004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.49073 -40.94172 -38.70541 -36.04410 -34.93499 -34.35077 -33.68639 -32.63871 -29.25687 -28.87530 -28.36893 -26.34330 -24.60811 -23.64531 -23.43214 -22.07445 -21.08397 -19.56947 -19.29843 -18.59932 -17.75429 -17.01566 -16.68059 -16.50946 -16.09481 -15.77489 -15.43706 -15.07034 -14.74157 -14.69264 -14.46658 -14.36928 -14.04025 -13.87060 -13.77584 -13.35437 -13.11550 -13.09960 -12.88182 -12.65699 -12.60646 -12.25086 -12.04084 -11.88567 -11.85993 -11.36899 -11.11755 -10.92580 -10.73012 -10.34688 -9.86931 -9.04257 -8.48201 -8.41596 -6.57515 0.07029 0.49850 1.37881 1.38447 1.40194 1.47919 2.24613 2.47557 2.63146 2.90330 2.93154 3.24941 3.38108 3.63673 3.72714 4.04827 4.13257 4.23008 4.34425 4.40248 4.45764 4.48207 4.60349 4.70536 4.72518 4.75567 4.78768 4.85040 4.89231 4.98829 5.05554 5.09638 5.12946 5.16785 5.18501 5.30428 5.86837 6.00907 6.03356 6.15206 6.24245 6.46660 6.54973 6.80938 7.08584 7.89867 8.72752 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026991 B = 0.003521 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.128595 B = 7949.740926 C = 8467.107209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.201 3.799 3 C -0.347 4.347 4 C 0.454 3.546 5 N -0.682 5.682 6 C 0.522 3.478 7 O -0.614 6.614 8 C 0.028 3.972 9 N -0.500 5.500 10 C 0.036 3.964 11 C 0.014 3.986 12 C -0.137 4.137 13 C -0.183 4.183 14 N -0.461 5.461 15 H 0.454 0.546 16 N -0.344 5.344 17 C 0.233 3.767 18 C -0.563 4.563 19 H 0.032 0.968 20 C 0.027 3.973 21 N -0.933 5.933 22 Si 0.946 3.054 23 H -0.253 1.253 24 H -0.287 1.287 25 H -0.236 1.236 26 H 0.118 0.882 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.174 0.826 30 H 0.023 0.977 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 10.682 9.032 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.074 3.926 3 C -0.379 4.379 4 C 0.205 3.795 5 N -0.444 5.444 6 C 0.308 3.692 7 O -0.499 6.499 8 C -0.066 4.066 9 N -0.223 5.223 10 C -0.112 4.112 11 C -0.134 4.134 12 C -0.174 4.174 13 C -0.223 4.223 14 N -0.184 5.184 15 H 0.303 0.697 16 N -0.130 5.130 17 C 0.114 3.886 18 C -0.601 4.601 19 H 0.050 0.950 20 C -0.174 4.174 21 N -0.570 5.570 22 Si 0.767 3.233 23 H -0.177 1.177 24 H -0.213 1.213 25 H -0.159 1.159 26 H 0.136 0.864 27 H 0.124 0.876 28 H 0.102 0.898 29 H 0.191 0.809 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.150 0.850 38 H 0.137 0.863 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.941 9.700 9.252 15.096 hybrid contribution -0.378 -0.208 -0.923 1.019 sum 6.563 9.492 8.330 14.232 Atomic orbital electron populations 1.20869 0.83448 1.05617 1.05802 1.21924 0.96099 0.84494 0.90053 1.22222 0.91539 1.00347 1.23792 1.19537 0.92206 0.82801 0.84960 1.68880 1.27274 1.05377 1.42917 1.20045 0.87583 0.86446 0.75089 1.90514 1.27514 1.79736 1.52107 1.21352 0.90105 0.86763 1.08412 1.61635 0.99610 1.33650 1.27381 1.22273 1.02800 0.98666 0.87476 1.22676 0.93321 0.95290 1.02075 1.23301 1.04692 0.96525 0.92929 1.23434 1.03745 0.97996 0.97100 1.44455 0.98790 1.04982 1.70152 0.69735 1.47413 0.93381 1.07612 1.64550 1.20268 0.97742 0.72984 0.97559 1.21309 1.47703 0.99224 0.91831 0.94987 1.25780 0.93418 0.99505 0.98685 1.70027 1.44625 1.20255 1.22143 0.85756 0.80792 0.77668 0.79069 1.17720 1.21264 1.15868 0.86385 0.87578 0.89849 0.80918 0.95895 0.90112 0.92894 0.90192 0.89921 0.94489 0.88926 0.85017 0.86338 0.89403 0.89163 0.91567 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 9.93 71.23 0.71 -1.82 16 2 C 0.20 6.86 6.93 41.14 0.28 7.15 16 3 C -0.35 -13.41 9.41 22.22 0.21 -13.20 16 4 C 0.45 18.16 8.07 133.82 1.08 19.24 16 5 N -0.68 -27.94 8.82 -309.87 -2.73 -30.67 16 6 C 0.52 21.16 7.00 87.94 0.62 21.77 16 7 O -0.61 -27.14 13.34 -4.01 -0.05 -27.19 16 8 C 0.03 0.88 2.32 2.78 0.01 0.89 16 9 N -0.50 -14.32 4.92 -902.97 -4.45 -18.77 16 10 C 0.04 1.01 9.39 127.69 1.20 2.21 16 11 C 0.01 0.27 8.60 127.69 1.10 1.37 16 12 C -0.14 -3.47 9.36 30.60 0.29 -3.19 16 13 C -0.18 -4.83 9.43 30.59 0.29 -4.54 16 14 N -0.46 -16.60 7.37 -54.81 -0.40 -17.00 16 15 H 0.45 14.29 8.96 -213.29 -1.91 12.38 16 16 N -0.34 -12.42 3.63 -337.49 -1.23 -13.65 16 17 C 0.23 8.53 4.78 85.63 0.41 8.94 16 18 C -0.56 -27.14 9.94 25.60 0.25 -26.89 16 19 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 20 C 0.03 1.34 5.47 84.65 0.46 1.80 16 21 N -0.93 -51.79 13.96 21.45 0.30 -51.49 16 22 Si 0.95 35.09 27.47 68.60 1.88 36.98 16 23 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 24 H -0.29 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.24 -7.59 6.54 99.48 0.65 -6.94 16 26 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.08 2.33 7.81 -2.39 -0.02 2.31 16 29 H 0.17 7.05 5.77 -2.91 -0.02 7.03 16 30 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.84 6.49 -2.39 -0.02 1.82 16 33 H 0.08 1.41 6.30 -2.39 -0.02 1.39 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.04 0.65 6.40 -2.38 -0.02 0.63 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.13 2.51 5.97 -2.39 -0.01 2.50 16 38 H 0.12 2.52 6.61 -2.39 -0.02 2.50 16 39 H 0.09 2.61 7.88 -2.39 -0.02 2.60 16 40 H 0.09 2.85 7.32 -2.39 -0.02 2.83 16 41 H 0.07 2.26 7.20 -2.39 -0.02 2.24 16 42 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -68.35 342.82 -0.70 -69.05 By element: Atomic # 1 Polarization: 39.94 SS G_CDS: -0.92 Total: 39.02 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 6.90 Total: 13.73 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -8.51 Total: -131.58 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 1.88 Total: 36.98 kcal Total: -68.35 -0.70 -69.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597460649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.488 kcal (2) G-P(sol) polarization free energy of solvation -68.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds