Wall clock time and date at job start Tue Mar 31 2020 03:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39871 * 125.90119 * 2 1 4 4 C 1.35317 * 107.91935 * 179.97438 * 3 2 1 5 5 N 1.34944 * 107.74658 * 0.02562 * 4 3 2 6 6 C 1.46506 * 126.03372 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46928 * 124.99978 * 6 5 4 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 179.97438 * 7 6 5 10 10 C 1.47078 * 120.87787 * 359.72569 * 9 7 6 11 11 C 1.53704 * 108.27595 * 128.75429 * 10 9 7 12 12 N 1.46898 * 109.25736 * 54.07986 * 11 10 9 13 13 C 1.46900 * 110.99752 * 172.60843 * 12 11 10 14 14 C 1.50696 * 109.47187 * 294.30052 * 13 12 11 15 15 H 1.07997 * 120.00060 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99924 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99828 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99936 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47132 * 90.00408 * 18 16 14 20 20 H 1.48501 * 109.47345 * 210.00018 * 18 16 14 21 21 H 1.48494 * 109.47280 * 330.00280 * 18 16 14 22 22 C 1.46903 * 111.26728 * 296.75701 * 12 11 10 23 23 C 1.47073 * 120.88112 * 179.97438 * 9 7 6 24 24 N 1.30845 * 125.89720 * 180.29639 * 2 1 3 25 25 H 1.08996 * 109.46968 * 89.99941 * 1 2 3 26 26 H 1.08997 * 109.46866 * 210.00206 * 1 2 3 27 27 H 1.08996 * 109.46592 * 330.00303 * 1 2 3 28 28 H 1.08002 * 126.03905 * 359.97438 * 3 2 1 29 29 H 1.08001 * 126.12451 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47073 * 244.99806 * 6 5 4 31 31 H 1.09000 * 109.47212 * 4.99889 * 6 5 4 32 32 H 1.09001 * 109.62667 * 248.51506 * 10 9 7 33 33 H 1.08996 * 109.63144 * 9.10112 * 10 9 7 34 34 H 1.08997 * 109.64102 * 294.07502 * 11 10 9 35 35 H 1.09001 * 109.44275 * 173.96148 * 11 10 9 36 36 H 1.09004 * 109.47056 * 54.30644 * 13 12 11 37 37 H 1.09001 * 109.46887 * 174.29928 * 13 12 11 38 38 H 0.96998 * 119.99954 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.49165 * 303.14754 * 22 12 11 40 40 H 1.08998 * 109.48819 * 183.06532 * 22 12 11 41 41 H 1.09000 * 109.63104 * 350.90139 * 23 9 7 42 42 H 1.09003 * 109.62654 * 111.48375 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7152 0.0006 5 7 3.6088 -0.6342 0.0004 6 6 4.7900 -1.5009 0.0003 7 6 4.7128 -2.4553 1.1640 8 8 3.7647 -2.4151 1.9193 9 7 5.6973 -3.3534 1.3654 10 6 6.8527 -3.4230 0.4580 11 6 8.1343 -3.3761 1.3052 12 7 8.0807 -4.4331 2.3239 13 6 9.3582 -4.5378 3.0416 14 6 10.4320 -5.0002 2.0908 15 1 10.1899 -5.1963 1.0568 16 6 11.7237 -5.1730 2.5411 17 7 12.6609 -5.5761 1.7113 18 14 12.1426 -4.8333 4.3295 19 1 11.9638 -6.0749 5.1243 20 1 13.5533 -4.3802 4.4301 21 1 11.2441 -3.7748 4.8560 22 6 6.9680 -4.2166 3.2584 23 6 5.6419 -4.2935 2.4951 24 7 2.2742 -1.0599 -0.0055 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5138 28 1 1.9924 2.1598 -0.0004 29 1 4.4892 1.3484 0.0003 30 1 4.8260 -2.0659 -0.9312 31 1 5.6885 -0.8904 0.0900 32 1 6.8182 -4.3540 -0.1079 33 1 6.8330 -2.5745 -0.2258 34 1 8.2158 -2.4047 1.7928 35 1 9.0002 -3.5342 0.6623 36 1 9.6276 -3.5629 3.4479 37 1 9.2597 -5.2560 3.8556 38 1 13.5696 -5.6980 2.0281 39 1 7.0659 -3.2335 3.7188 40 1 6.9879 -4.9845 4.0316 41 1 4.8213 -4.0207 3.1586 42 1 5.4931 -5.3066 2.1214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602203800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:19 Heat of formation + Delta-G solvation = 64.765643 kcal Electronic energy + Delta-G solvation = -23193.840269 eV Core-core repulsion = 19790.359597 eV Total energy + Delta-G solvation = -3403.480671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35534 -39.96617 -37.68909 -34.60948 -34.06541 -32.49237 -31.27697 -30.41058 -29.60022 -28.76188 -26.60923 -25.31369 -23.44960 -21.97703 -21.28789 -20.71490 -19.93452 -18.82155 -17.48160 -17.07593 -16.89855 -15.82115 -15.62125 -14.89679 -14.70838 -14.60247 -14.34369 -14.11761 -13.83305 -13.72251 -13.52942 -13.30691 -12.93867 -12.76439 -12.49211 -12.31161 -12.18943 -12.16890 -11.64483 -11.27165 -11.22823 -10.89764 -10.66332 -10.60351 -10.42079 -10.00105 -9.95894 -9.42309 -9.23668 -8.67520 -8.66100 -8.63115 -7.56701 -6.15689 -4.14118 1.76062 2.23365 2.49212 2.72212 2.97321 3.21247 3.29241 3.30567 4.17125 4.32765 4.38108 4.51058 4.62901 4.75649 4.81872 5.05852 5.12118 5.15368 5.21927 5.33310 5.46354 5.46736 5.50358 5.59118 5.65545 5.69726 5.71717 5.87875 5.97061 6.07658 6.24656 6.30149 6.46266 6.58657 6.71279 6.82301 6.83735 7.32757 7.44857 7.66998 7.71855 7.85768 8.07338 8.51977 8.90832 9.45670 10.97013 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037520 B = 0.002922 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.088806 B = 9580.187500 C = 9785.929265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.061 3.939 3 C -0.270 4.270 4 C 0.053 3.947 5 N -0.362 5.362 6 C 0.117 3.883 7 C 0.501 3.499 8 O -0.520 6.520 9 N -0.608 5.608 10 C 0.107 3.893 11 C 0.049 3.951 12 N -0.526 5.526 13 C 0.163 3.837 14 C -0.513 4.513 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.039 3.961 23 C 0.121 3.879 24 N -0.265 5.265 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.146 0.854 29 H 0.173 0.827 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.105 0.895 36 H -0.011 1.011 37 H 0.026 0.974 38 H 0.265 0.735 39 H 0.027 0.973 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.363 11.974 -4.398 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.106 4.106 3 C -0.300 4.300 4 C -0.092 4.092 5 N -0.144 5.144 6 C -0.009 4.009 7 C 0.286 3.714 8 O -0.395 6.395 9 N -0.343 5.343 10 C -0.016 4.016 11 C -0.080 4.080 12 N -0.251 5.251 13 C 0.037 3.963 14 C -0.551 4.551 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.091 4.091 23 C -0.001 4.001 24 N -0.087 5.087 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.164 0.836 29 H 0.190 0.810 30 H 0.132 0.868 31 H 0.143 0.857 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.123 0.877 36 H 0.007 0.993 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.045 0.955 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.573 10.147 -4.237 20.730 hybrid contribution 0.916 1.761 1.398 2.428 sum -16.657 11.909 -2.839 20.672 Atomic orbital electron populations 1.20132 0.86848 1.03192 1.02644 1.22399 0.97013 0.90891 1.00344 1.21342 0.91600 0.99672 1.17351 1.22533 0.99872 0.84507 1.02240 1.48024 1.04950 1.04207 1.57194 1.21550 0.85805 0.93760 0.99740 1.20427 0.82785 0.81674 0.86480 1.90758 1.32041 1.70254 1.46461 1.48220 1.21633 1.34923 1.29477 1.22170 0.84857 1.02596 0.91987 1.22457 0.97143 0.92779 0.95610 1.61890 1.04662 1.44097 1.14464 1.20182 0.86383 0.95121 0.94641 1.20988 0.91256 1.45086 0.97815 0.90030 1.24891 0.96299 0.94692 0.97330 1.69881 1.02070 1.46706 1.34970 0.86874 0.77831 0.79149 0.85964 1.20067 1.21140 1.19355 1.22458 0.91402 1.00000 0.95221 1.21731 0.97953 0.92658 0.87794 1.77451 0.85935 1.22401 1.22931 0.90779 0.90997 0.90638 0.83620 0.80966 0.86766 0.85743 0.89866 0.90338 0.95573 0.87692 0.99333 0.95564 0.92544 0.95473 0.89896 0.89320 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.45 36.01 0.38 -0.24 16 2 C 0.06 0.76 7.22 -82.40 -0.59 0.17 16 3 C -0.27 -2.89 10.74 -40.01 -0.43 -3.32 16 4 C 0.05 0.56 11.45 -17.22 -0.20 0.36 16 5 N -0.36 -4.63 3.39 -62.54 -0.21 -4.84 16 6 C 0.12 1.23 5.35 -5.19 -0.03 1.20 16 7 C 0.50 7.19 7.74 -10.99 -0.08 7.10 16 8 O -0.52 -9.59 15.17 5.56 0.08 -9.51 16 9 N -0.61 -8.41 3.00 -172.21 -0.52 -8.92 16 10 C 0.11 1.33 6.53 -3.36 -0.02 1.30 16 11 C 0.05 0.81 5.47 -3.46 -0.02 0.79 16 12 N -0.53 -10.07 4.62 -235.49 -1.09 -11.16 16 13 C 0.16 3.71 3.79 -4.98 -0.02 3.69 16 14 C -0.51 -13.70 8.96 -34.44 -0.31 -14.01 16 15 H 0.08 2.34 7.37 -52.49 -0.39 1.95 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -26.40 13.96 55.43 0.77 -25.62 16 18 Si 0.87 20.73 27.47 -169.99 -4.67 16.06 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 22 C 0.04 0.63 5.62 -3.72 -0.02 0.61 16 23 C 0.12 1.77 6.59 -3.63 -0.02 1.75 16 24 N -0.27 -4.01 11.66 33.67 0.39 -3.62 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.11 0.98 7.99 -51.93 -0.41 0.57 16 31 H 0.12 0.90 7.60 -51.93 -0.39 0.50 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.68 6.02 -51.93 -0.31 0.37 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.10 1.90 6.67 -51.93 -0.35 1.56 16 36 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 37 H 0.03 0.61 7.40 -51.93 -0.38 0.22 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16 41 H 0.09 1.33 7.06 -51.93 -0.37 0.96 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -34.92 342.10 -7.92 -42.83 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.37 Total: -1.61 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.47 Total: 1.25 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.65 Total: -54.17 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.92 -7.92 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602203800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.598 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds