Wall clock time and date at job start Tue Mar 31 2020 04:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35316 * 126.13243 * 2 1 4 4 C 1.39868 * 107.92254 * 180.14606 * 3 2 1 5 5 C 1.50706 * 125.89743 * 179.86337 * 4 3 2 6 6 C 1.50702 * 109.46792 * 124.71777 * 5 4 3 7 7 O 1.21278 * 120.00423 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99692 * 180.02562 * 6 5 4 9 9 C 1.47081 * 120.88114 * 0.02562 * 8 6 5 10 10 C 1.53235 * 108.52054 * 231.16282 * 9 8 6 11 11 N 1.46906 * 109.34079 * 306.16959 * 10 9 8 12 12 C 1.46898 * 110.99801 * 187.25100 * 11 10 9 13 13 C 1.50700 * 109.46835 * 170.00134 * 12 11 10 14 14 H 1.08001 * 120.00412 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00313 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00149 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99689 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47324 * 89.99628 * 17 15 13 19 19 H 1.48497 * 109.47005 * 210.00209 * 17 15 13 20 20 H 1.48500 * 109.47246 * 329.99791 * 17 15 13 21 21 C 1.46896 * 111.26658 * 63.10656 * 11 10 9 22 22 C 1.47082 * 120.88386 * 179.97438 * 8 6 5 23 23 N 1.30837 * 108.20273 * 359.60449 * 4 3 2 24 24 N 1.34959 * 126.12635 * 179.70740 * 2 1 3 25 25 H 0.97005 * 126.03036 * 359.97438 * 24 2 1 26 26 H 1.09000 * 109.47076 * 270.26689 * 1 2 3 27 27 H 1.09000 * 109.46664 * 30.26581 * 1 2 3 28 28 H 1.08997 * 109.47163 * 150.27065 * 1 2 3 29 29 H 1.08000 * 126.03144 * 0.02823 * 3 2 1 30 30 H 1.09000 * 109.46807 * 4.71883 * 5 4 3 31 31 H 1.09000 * 109.46946 * 244.71629 * 5 4 3 32 32 H 1.09002 * 109.63012 * 111.45725 * 9 8 6 33 33 H 1.09000 * 109.63054 * 350.86988 * 9 8 6 34 34 H 1.08997 * 109.49554 * 186.21402 * 10 9 8 35 35 H 1.08997 * 109.49382 * 66.13002 * 10 9 8 36 36 H 1.08993 * 109.47768 * 290.00114 * 12 11 10 37 37 H 1.09004 * 109.47075 * 50.00431 * 12 11 10 38 38 H 0.97003 * 120.00014 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.49756 * 56.85119 * 21 11 10 40 40 H 1.08998 * 109.49494 * 176.90931 * 21 11 10 41 41 H 1.09001 * 109.62379 * 9.12792 * 22 8 6 42 42 H 1.08998 * 109.62760 * 248.54863 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6558 -0.0034 5 6 4.8544 1.5393 -0.0075 6 6 5.7390 1.1791 1.1582 7 8 5.4103 0.2927 1.9178 8 7 6.8950 1.8428 1.3572 9 6 7.3117 2.9222 0.4491 10 6 8.7497 2.6489 -0.0043 11 7 9.6052 2.4648 1.1757 12 6 11.0198 2.3714 0.7908 13 6 11.8813 2.4306 2.0259 14 1 11.4238 2.5282 2.9993 15 6 13.2537 2.3610 1.9131 16 7 14.0055 2.4132 2.9909 17 14 14.0452 2.1942 0.2294 18 1 14.3166 3.5445 -0.3260 19 1 15.3211 1.4447 0.3542 20 1 13.1272 1.4609 -0.6787 21 6 9.1929 1.2897 1.9547 22 6 7.7728 1.5078 2.4888 23 7 3.6334 -0.6526 0.0032 24 7 2.3027 -1.0901 0.0056 25 1 2.0054 -2.0134 0.0106 26 1 -0.3633 0.0048 1.0277 27 1 -0.3632 0.8876 -0.5180 28 1 -0.3633 -0.8924 -0.5096 29 1 1.9741 2.1210 0.0004 30 1 4.5485 2.5821 0.0771 31 1 5.4034 1.3961 -0.9382 32 1 7.2680 3.8778 0.9718 33 1 6.6524 2.9457 -0.4186 34 1 9.1135 3.4937 -0.5890 35 1 8.7732 1.7463 -0.6149 36 1 11.1937 1.4291 0.2714 37 1 11.2726 3.2018 0.1314 38 1 14.9711 2.3646 2.9115 39 1 9.2101 0.4060 1.3168 40 1 9.8783 1.1485 2.7903 41 1 7.4183 0.5961 2.9697 42 1 7.7732 2.3276 3.2071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602206884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:48 Heat of formation + Delta-G solvation = 22.295259 kcal Electronic energy + Delta-G solvation = -23045.394441 eV Core-core repulsion = 19640.072115 eV Total energy + Delta-G solvation = -3405.322325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.22493 -41.03192 -38.96053 -35.95861 -34.49108 -34.28833 -32.61705 -32.07185 -30.73319 -29.39762 -27.80139 -27.15043 -24.68858 -23.56481 -22.44107 -21.48659 -20.94011 -19.61982 -18.91325 -18.43122 -17.99928 -16.93862 -16.55404 -16.47005 -16.01128 -15.78734 -15.69975 -15.16994 -14.83362 -14.60489 -14.52301 -14.43095 -14.32336 -13.78372 -13.55283 -13.51333 -13.21299 -13.03594 -12.86696 -12.75993 -12.47703 -12.27832 -12.20150 -11.89295 -11.85669 -11.47544 -11.42981 -10.85715 -10.76647 -10.23661 -9.73346 -9.48920 -9.05097 -8.27702 -6.31325 0.97582 1.35339 1.37443 1.47414 1.65535 1.68554 2.00409 2.16373 2.34858 3.04755 3.17263 3.53348 3.64734 3.89603 4.04625 4.09785 4.20150 4.25344 4.29702 4.43221 4.47213 4.49789 4.60537 4.74049 4.77728 4.79433 4.82323 4.87306 4.90478 4.96794 5.02382 5.13338 5.15877 5.29291 5.47575 5.52954 5.71652 5.94119 6.27149 6.46520 6.49260 6.64423 6.75236 6.79516 7.19431 7.32226 8.88754 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.042761 B = 0.002786 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.647768 B =10047.796524 C =10171.724190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.086 3.914 3 C -0.283 4.283 4 C 0.073 3.927 5 C -0.053 4.053 6 C 0.512 3.488 7 O -0.580 6.580 8 N -0.612 5.612 9 C 0.115 3.885 10 C 0.030 3.970 11 N -0.538 5.538 12 C 0.172 3.828 13 C -0.517 4.517 14 H 0.039 0.961 15 C 0.006 3.994 16 N -0.948 5.948 17 Si 0.949 3.051 18 H -0.260 1.260 19 H -0.286 1.286 20 H -0.253 1.253 21 C 0.059 3.941 22 C 0.128 3.872 23 N -0.320 5.320 24 N -0.479 5.479 25 H 0.444 0.556 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.172 0.828 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.027 0.973 36 H -0.018 1.018 37 H 0.039 0.961 38 H 0.266 0.734 39 H 0.015 0.985 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.117 0.274 -12.307 30.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C -0.311 4.311 4 C -0.094 4.094 5 C -0.094 4.094 6 C 0.302 3.698 7 O -0.459 6.459 8 N -0.345 5.345 9 C -0.006 4.006 10 C -0.098 4.098 11 N -0.263 5.263 12 C 0.045 3.955 13 C -0.555 4.555 14 H 0.057 0.943 15 C -0.191 4.191 16 N -0.589 5.589 17 Si 0.772 3.228 18 H -0.185 1.185 19 H -0.211 1.211 20 H -0.177 1.177 21 C -0.070 4.070 22 C 0.005 3.995 23 N -0.144 5.144 24 N -0.189 5.189 25 H 0.289 0.711 26 H 0.107 0.893 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.190 0.810 30 H 0.170 0.830 31 H 0.147 0.853 32 H 0.108 0.892 33 H 0.148 0.852 34 H 0.121 0.879 35 H 0.045 0.955 36 H 0.000 1.000 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.033 0.967 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -27.460 -0.810 -11.559 29.805 hybrid contribution 0.814 -0.923 -0.384 1.289 sum -26.646 -1.733 -11.943 29.252 Atomic orbital electron populations 1.20594 0.84129 1.05490 1.04432 1.21809 0.96398 0.86991 0.99128 1.21473 0.90506 1.00788 1.18372 1.21967 0.96059 0.91449 0.99941 1.20224 0.90728 1.00960 0.97479 1.21072 0.81289 0.80704 0.86773 1.90696 1.73505 1.32679 1.49064 1.48304 1.20513 1.36738 1.28974 1.22142 0.94284 0.89838 0.94375 1.22676 0.93911 1.01416 0.91801 1.61817 1.03408 1.39121 1.21955 1.19941 0.85632 0.94799 0.95116 1.21272 0.91221 1.49348 0.93696 0.94284 1.25869 0.97905 0.94480 1.00869 1.70052 1.05507 1.52450 1.30876 0.85694 0.77924 0.79367 0.79800 1.18451 1.21143 1.17738 1.22204 0.95828 0.90795 0.98139 1.21500 0.87731 1.01455 0.88828 1.77345 0.97819 1.13960 1.25260 1.46408 1.03547 1.09240 1.59673 0.71052 0.89317 0.87796 0.89617 0.81033 0.82955 0.85271 0.89182 0.85182 0.87906 0.95498 1.00040 0.94292 0.92472 0.96708 0.91404 0.90510 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.43 71.24 0.74 0.18 16 2 C 0.09 1.39 7.21 41.40 0.30 1.69 16 3 C -0.28 -5.19 10.64 21.99 0.23 -4.96 16 4 C 0.07 1.76 6.02 43.10 0.26 2.02 16 5 C -0.05 -1.01 4.64 29.10 0.14 -0.88 16 6 C 0.51 14.89 7.70 87.66 0.67 15.57 16 7 O -0.58 -22.59 15.01 -3.02 -0.05 -22.63 16 8 N -0.61 -17.20 3.01 -817.85 -2.46 -19.66 16 9 C 0.12 2.42 6.50 86.35 0.56 2.98 16 10 C 0.03 0.86 5.62 86.38 0.49 1.35 16 11 N -0.54 -21.35 4.62 -899.75 -4.16 -25.51 16 12 C 0.17 8.06 3.79 85.56 0.32 8.38 16 13 C -0.52 -29.67 8.96 25.60 0.23 -29.44 16 14 H 0.04 2.50 7.37 -2.91 -0.02 2.48 16 15 C 0.01 0.35 5.47 84.66 0.46 0.81 16 16 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 17 Si 0.95 43.74 27.47 68.60 1.88 45.62 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 21 C 0.06 2.38 5.46 86.40 0.47 2.85 16 22 C 0.13 4.38 6.60 86.36 0.57 4.95 16 23 N -0.32 -9.28 12.04 -47.38 -0.57 -9.86 16 24 N -0.48 -9.85 7.36 -48.00 -0.35 -10.20 16 25 H 0.44 6.49 8.96 -213.33 -1.91 4.58 16 26 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.15 1.63 7.98 -2.39 -0.02 1.61 16 31 H 0.13 1.94 7.66 -2.39 -0.02 1.92 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.13 1.52 6.02 -2.39 -0.01 1.50 16 34 H 0.10 2.51 7.99 -2.39 -0.02 2.49 16 35 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 36 H -0.02 -0.87 7.18 -2.39 -0.02 -0.88 16 37 H 0.04 1.73 7.40 -2.39 -0.02 1.71 16 38 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 3.13 6.67 -2.39 -0.02 3.11 16 41 H 0.08 2.79 7.06 -2.39 -0.02 2.78 16 42 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -83.40 340.91 -0.89 -84.29 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -0.94 Total: 11.55 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 5.45 Total: 5.49 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -7.24 Total: -124.32 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -83.40 -0.89 -84.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.590 kcal (2) G-P(sol) polarization free energy of solvation -83.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds