Wall clock time and date at job start Tue Mar 31 2020 03:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30450 * 125.98993 * 2 1 4 4 N 1.39931 * 108.90166 * 180.02562 * 3 2 1 5 5 C 1.46495 * 125.76115 * 179.97438 * 4 3 2 6 6 C 1.34270 * 108.48747 * 359.74724 * 4 3 2 7 7 C 1.38045 * 107.41510 * 0.39666 * 6 4 3 8 8 C 1.47433 * 126.41063 * 179.86811 * 7 6 4 9 9 O 1.21603 * 119.99516 * 140.94389 * 8 7 6 10 10 N 1.34772 * 119.99881 * 320.94093 * 8 7 6 11 11 C 1.47074 * 120.88534 * 354.37430 * 10 8 7 12 12 C 1.53241 * 108.52310 * 231.16047 * 11 10 8 13 13 N 1.46906 * 109.33845 * 306.17077 * 12 11 10 14 14 C 1.46899 * 111.00001 * 187.25236 * 13 12 11 15 15 C 1.50702 * 109.47220 * 65.69433 * 14 13 12 16 16 H 1.08007 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00076 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00010 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47284 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.47083 * 119.99824 * 19 17 15 22 22 H 1.48495 * 109.47549 * 239.99807 * 19 17 15 23 23 C 1.46897 * 111.27015 * 63.10354 * 13 12 11 24 24 C 1.47081 * 120.87733 * 174.34661 * 10 8 7 25 25 H 1.09002 * 109.46929 * 269.96301 * 1 2 3 26 26 H 1.08999 * 109.46827 * 29.95311 * 1 2 3 27 27 H 1.08998 * 109.47134 * 149.95624 * 1 2 3 28 28 H 1.08999 * 109.47217 * 89.96951 * 5 4 3 29 29 H 1.08997 * 109.47395 * 209.97783 * 5 4 3 30 30 H 1.09006 * 109.46742 * 329.97597 * 5 4 3 31 31 H 1.07997 * 126.29216 * 180.23970 * 6 4 3 32 32 H 1.08997 * 109.63027 * 350.87104 * 11 10 8 33 33 H 1.09004 * 109.63343 * 111.44765 * 11 10 8 34 34 H 1.08993 * 109.49411 * 66.12655 * 12 11 10 35 35 H 1.09000 * 109.49709 * 186.20910 * 12 11 10 36 36 H 1.08996 * 109.47352 * 185.69731 * 14 13 12 37 37 H 1.09003 * 109.46989 * 305.69825 * 14 13 12 38 38 H 0.96997 * 120.00154 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.49371 * 176.93449 * 23 13 12 40 40 H 1.08996 * 109.49329 * 56.85175 * 23 13 12 41 41 H 1.09006 * 109.63161 * 248.54689 * 24 10 8 42 42 H 1.09001 * 109.62932 * 9.13144 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7788 1.5290 -0.0013 6 6 3.6439 -0.6980 0.0047 7 6 2.3372 -1.1432 -0.0005 8 6 1.8916 -2.5485 -0.0003 9 8 0.9252 -2.8798 0.6595 10 7 2.5551 -3.4660 -0.7313 11 6 3.6484 -3.0676 -1.6308 12 6 3.3850 -3.6716 -3.0143 13 7 3.1860 -5.1212 -2.8825 14 6 3.1016 -5.7630 -4.2011 15 6 4.4275 -5.6383 -4.9064 16 1 5.2508 -5.1332 -4.4231 17 6 4.5897 -6.1692 -6.1685 18 7 3.5874 -6.7847 -6.7567 19 14 6.2335 -6.0152 -7.0423 20 1 7.1905 -5.2859 -6.1719 21 1 6.7663 -7.3698 -7.3369 22 1 6.0508 -5.2682 -8.3127 23 6 1.9988 -5.4246 -2.0723 24 6 2.2054 -4.8923 -0.6502 25 1 -0.3633 -0.0007 1.0277 26 1 -0.3633 0.8904 -0.5131 27 1 -0.3633 -0.8896 -0.5145 28 1 5.0685 1.7491 1.0262 29 1 5.6057 1.0389 -0.5151 30 1 4.5307 2.4576 -0.5156 31 1 4.5297 -1.3157 0.0093 32 1 3.6829 -1.9808 -1.7063 33 1 4.5962 -3.4407 -1.2428 34 1 2.4914 -3.2195 -3.4445 35 1 4.2390 -3.4793 -3.6638 36 1 2.8538 -6.8172 -4.0769 37 1 2.3276 -5.2753 -4.7937 38 1 3.7016 -7.1585 -7.6444 39 1 1.8475 -6.5034 -2.0385 40 1 1.1245 -4.9480 -2.5155 41 1 3.0146 -5.4409 -0.1679 42 1 1.2858 -5.0119 -0.0773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:22 Heat of formation + Delta-G solvation = 56.205350 kcal Electronic energy + Delta-G solvation = -23706.637941 eV Core-core repulsion = 20302.786067 eV Total energy + Delta-G solvation = -3403.851874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.59448 -39.47200 -37.35868 -34.41651 -34.11770 -32.50027 -31.35919 -30.18978 -29.50499 -28.20544 -26.25282 -25.26957 -23.31815 -22.79758 -21.58659 -20.71264 -19.93457 -18.76740 -17.11047 -16.46405 -16.38795 -15.87989 -15.54190 -14.94299 -14.77393 -14.39339 -14.30728 -13.84107 -13.70508 -13.64494 -13.48499 -13.28365 -12.80015 -12.52002 -12.43337 -12.22714 -12.13788 -11.89497 -11.29603 -11.07588 -10.99977 -10.91082 -10.72897 -10.63108 -10.51295 -9.90613 -9.70274 -9.44141 -9.27790 -8.72800 -8.50890 -8.35619 -7.32440 -6.07976 -4.10002 1.44603 2.14372 2.17694 3.11418 3.26571 3.34297 3.37426 3.40125 4.19005 4.37002 4.47235 4.72528 4.80234 4.81964 4.92232 5.06985 5.11426 5.27175 5.33361 5.41872 5.43718 5.59525 5.61708 5.66177 5.76210 5.79368 5.84514 5.93181 6.06334 6.30574 6.40002 6.46379 6.47894 6.62303 6.76356 7.21833 7.28165 7.44679 7.63850 7.73526 8.00792 8.11453 8.39267 8.46637 8.97362 9.54558 11.02943 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018650 B = 0.003940 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.989265 B = 7104.624676 C = 8047.353355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.126 3.874 3 N -0.303 5.303 4 N -0.365 5.365 5 C 0.098 3.902 6 C 0.098 3.902 7 C -0.280 4.280 8 C 0.594 3.406 9 O -0.548 6.548 10 N -0.605 5.605 11 C 0.106 3.894 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.193 3.807 15 C -0.509 4.509 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.041 3.959 24 C 0.120 3.880 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.185 0.815 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.096 0.904 36 H 0.032 0.968 37 H -0.009 1.009 38 H 0.261 0.739 39 H 0.081 0.919 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 13.920 13.423 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.041 4.041 3 N -0.125 5.125 4 N -0.143 5.143 5 C -0.043 4.043 6 C -0.053 4.053 7 C -0.294 4.294 8 C 0.382 3.618 9 O -0.427 6.427 10 N -0.337 5.337 11 C -0.017 4.017 12 C -0.078 4.078 13 N -0.260 5.260 14 C 0.068 3.932 15 C -0.547 4.547 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.089 4.089 24 C -0.002 4.002 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.202 0.798 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.009 0.991 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.197 14.830 13.837 20.318 hybrid contribution 0.447 -0.585 -1.163 1.377 sum 1.644 14.246 12.673 19.138 Atomic orbital electron populations 1.20216 0.85872 1.03353 1.03551 1.22389 0.97098 0.88790 0.95842 1.77141 0.86028 1.22577 1.26775 1.48268 1.06049 1.04727 1.55240 1.21978 0.83862 0.94768 1.03717 1.23152 0.98970 0.85025 0.98158 1.20209 0.92308 0.94532 1.22397 1.17297 0.82109 0.83554 0.78824 1.90730 1.27239 1.80828 1.43869 1.48064 1.35528 1.07523 1.42632 1.22155 0.89611 0.99438 0.90502 1.22314 1.01566 0.89352 0.94600 1.62088 1.36014 1.08652 1.19272 1.19735 0.96902 0.94211 0.82376 1.21168 0.97307 1.36265 0.99992 0.91793 1.24993 0.96851 0.95319 0.97410 1.69963 1.30968 1.37655 1.15055 0.86455 0.83780 0.77825 0.79410 1.19675 1.20985 1.21138 1.22406 0.92669 1.00732 0.93072 1.21752 1.01576 0.79342 0.97563 0.89925 0.90900 0.89970 0.90416 0.88917 0.88888 0.79798 0.90104 0.90844 0.95722 0.88615 0.94993 0.99106 0.92913 0.90074 0.95479 0.90962 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 9.93 36.01 0.36 -0.48 16 2 C 0.13 1.74 7.26 -82.02 -0.60 1.14 16 3 N -0.30 -4.03 12.50 33.89 0.42 -3.61 16 4 N -0.36 -3.85 3.98 -67.60 -0.27 -4.12 16 5 C 0.10 0.55 11.44 59.84 0.68 1.24 16 6 C 0.10 1.06 9.12 -16.56 -0.15 0.91 16 7 C -0.28 -3.89 5.25 -105.07 -0.55 -4.44 16 8 C 0.59 9.47 7.37 -12.52 -0.09 9.38 16 9 O -0.55 -10.13 15.88 5.28 0.08 -10.05 16 10 N -0.60 -9.27 3.01 -173.72 -0.52 -9.79 16 11 C 0.11 1.50 5.52 -3.60 -0.02 1.48 16 12 C 0.05 0.93 5.46 -3.70 -0.02 0.91 16 13 N -0.54 -11.00 4.62 -235.76 -1.09 -12.09 16 14 C 0.19 4.87 4.72 -4.98 -0.02 4.84 16 15 C -0.51 -13.70 8.41 -34.44 -0.29 -13.99 16 16 H 0.06 1.68 7.13 -52.48 -0.37 1.31 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 19 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.04 0.73 5.62 -3.70 -0.02 0.70 16 24 C 0.12 1.87 6.61 -3.60 -0.02 1.84 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.04 7.76 -51.93 -0.40 0.64 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.19 1.43 7.25 -52.49 -0.38 1.05 16 32 H 0.08 1.00 4.94 -51.93 -0.26 0.74 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 36 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 37 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.38 7.04 -51.93 -0.37 1.01 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -33.72 342.76 -7.65 -41.37 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.32 Total: -2.35 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -0.84 Total: 4.97 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.72 Total: -55.02 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.72 -7.65 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.579 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds