Wall clock time and date at job start Tue Mar 31 2020 03:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30450 * 125.98993 * 2 1 4 4 N 1.39931 * 108.90166 * 180.02562 * 3 2 1 5 5 C 1.46495 * 125.76115 * 179.97438 * 4 3 2 6 6 C 1.34270 * 108.48747 * 359.74724 * 4 3 2 7 7 C 1.38045 * 107.41510 * 0.39666 * 6 4 3 8 8 C 1.47433 * 126.41063 * 179.86811 * 7 6 4 9 9 O 1.21603 * 119.99516 * 140.94389 * 8 7 6 10 10 N 1.34772 * 119.99881 * 320.94093 * 8 7 6 11 11 C 1.47074 * 120.88534 * 354.37430 * 10 8 7 12 12 C 1.53241 * 108.52310 * 231.16047 * 11 10 8 13 13 N 1.46906 * 109.33845 * 306.17077 * 12 11 10 14 14 C 1.46899 * 111.00001 * 187.25236 * 13 12 11 15 15 C 1.50702 * 109.47220 * 65.69433 * 14 13 12 16 16 H 1.08007 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00076 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00010 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47284 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.47083 * 119.99824 * 19 17 15 22 22 H 1.48495 * 109.47549 * 239.99807 * 19 17 15 23 23 C 1.46897 * 111.27015 * 63.10354 * 13 12 11 24 24 C 1.47081 * 120.87733 * 174.34661 * 10 8 7 25 25 H 1.09002 * 109.46929 * 269.96301 * 1 2 3 26 26 H 1.08999 * 109.46827 * 29.95311 * 1 2 3 27 27 H 1.08998 * 109.47134 * 149.95624 * 1 2 3 28 28 H 1.08999 * 109.47217 * 89.96951 * 5 4 3 29 29 H 1.08997 * 109.47395 * 209.97783 * 5 4 3 30 30 H 1.09006 * 109.46742 * 329.97597 * 5 4 3 31 31 H 1.07997 * 126.29216 * 180.23970 * 6 4 3 32 32 H 1.08997 * 109.63027 * 350.87104 * 11 10 8 33 33 H 1.09004 * 109.63343 * 111.44765 * 11 10 8 34 34 H 1.08993 * 109.49411 * 66.12655 * 12 11 10 35 35 H 1.09000 * 109.49709 * 186.20910 * 12 11 10 36 36 H 1.08996 * 109.47352 * 185.69731 * 14 13 12 37 37 H 1.09003 * 109.46989 * 305.69825 * 14 13 12 38 38 H 0.96997 * 120.00154 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.49371 * 176.93449 * 23 13 12 40 40 H 1.08996 * 109.49329 * 56.85175 * 23 13 12 41 41 H 1.09006 * 109.63161 * 248.54689 * 24 10 8 42 42 H 1.09001 * 109.62932 * 9.13144 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7788 1.5290 -0.0013 6 6 3.6439 -0.6980 0.0047 7 6 2.3372 -1.1432 -0.0005 8 6 1.8916 -2.5485 -0.0003 9 8 0.9252 -2.8798 0.6595 10 7 2.5551 -3.4660 -0.7313 11 6 3.6484 -3.0676 -1.6308 12 6 3.3850 -3.6716 -3.0143 13 7 3.1860 -5.1212 -2.8825 14 6 3.1016 -5.7630 -4.2011 15 6 4.4275 -5.6383 -4.9064 16 1 5.2508 -5.1332 -4.4231 17 6 4.5897 -6.1692 -6.1685 18 7 3.5874 -6.7847 -6.7567 19 14 6.2335 -6.0152 -7.0423 20 1 7.1905 -5.2859 -6.1719 21 1 6.7663 -7.3698 -7.3369 22 1 6.0508 -5.2682 -8.3127 23 6 1.9988 -5.4246 -2.0723 24 6 2.2054 -4.8923 -0.6502 25 1 -0.3633 -0.0007 1.0277 26 1 -0.3633 0.8904 -0.5131 27 1 -0.3633 -0.8896 -0.5145 28 1 5.0685 1.7491 1.0262 29 1 5.6057 1.0389 -0.5151 30 1 4.5307 2.4576 -0.5156 31 1 4.5297 -1.3157 0.0093 32 1 3.6829 -1.9808 -1.7063 33 1 4.5962 -3.4407 -1.2428 34 1 2.4914 -3.2195 -3.4445 35 1 4.2390 -3.4793 -3.6638 36 1 2.8538 -6.8172 -4.0769 37 1 2.3276 -5.2753 -4.7937 38 1 3.7016 -7.1585 -7.6444 39 1 1.8475 -6.5034 -2.0385 40 1 1.1245 -4.9480 -2.5155 41 1 3.0146 -5.4409 -0.1679 42 1 1.2858 -5.0119 -0.0773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:22 Heat of formation + Delta-G solvation = 32.188695 kcal Electronic energy + Delta-G solvation = -23707.679381 eV Core-core repulsion = 20302.786067 eV Total energy + Delta-G solvation = -3404.893314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.51993 -40.72796 -38.81846 -35.96021 -34.94494 -34.41737 -32.62076 -31.26847 -30.35965 -29.88946 -27.55287 -26.49414 -24.70598 -24.18557 -23.05327 -21.87082 -21.07400 -19.89126 -18.47786 -18.22210 -17.53127 -16.81112 -16.61354 -16.59873 -16.05265 -15.94972 -15.46020 -15.34141 -15.12784 -14.70683 -14.45717 -14.25143 -14.12390 -13.87314 -13.47563 -13.34950 -13.11732 -13.04642 -12.96971 -12.72234 -12.59571 -12.37533 -12.29075 -12.09748 -11.86501 -11.72355 -11.25070 -10.93504 -10.61305 -10.32475 -9.81262 -9.54428 -9.05307 -8.18609 -6.29031 0.57283 1.10974 1.44433 1.45397 1.45905 1.58404 1.93715 2.25709 2.42714 3.14246 3.24291 3.35920 3.71266 3.81841 4.03026 4.06403 4.11363 4.26367 4.34548 4.38556 4.44086 4.46155 4.52439 4.58910 4.70466 4.74117 4.77017 4.85696 4.88985 4.95014 4.95899 5.02673 5.20833 5.25046 5.45446 5.51461 5.65914 5.91339 6.03738 6.23954 6.43716 6.56030 6.58142 6.87302 7.18453 7.41185 8.93210 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018650 B = 0.003940 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.989265 B = 7104.624676 C = 8047.353355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.109 3.891 3 N -0.325 5.325 4 N -0.358 5.358 5 C 0.085 3.915 6 C 0.118 3.882 7 C -0.315 4.315 8 C 0.596 3.404 9 O -0.581 6.581 10 N -0.607 5.607 11 C 0.120 3.880 12 C 0.050 3.950 13 N -0.533 5.533 14 C 0.206 3.794 15 C -0.518 4.518 16 H 0.073 0.927 17 C -0.001 4.001 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.255 1.255 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.042 3.958 24 C 0.130 3.870 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.221 0.779 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.005 0.995 35 H 0.088 0.912 36 H 0.005 0.995 37 H -0.044 1.044 38 H 0.263 0.737 39 H 0.083 0.917 40 H 0.010 0.990 41 H 0.089 0.911 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 15.440 14.345 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.057 4.057 3 N -0.148 5.148 4 N -0.135 5.135 5 C -0.053 4.053 6 C -0.035 4.035 7 C -0.330 4.330 8 C 0.386 3.614 9 O -0.462 6.462 10 N -0.339 5.339 11 C -0.003 4.003 12 C -0.079 4.079 13 N -0.258 5.258 14 C 0.080 3.920 15 C -0.557 4.557 16 H 0.091 0.909 17 C -0.198 4.198 18 N -0.579 5.579 19 Si 0.796 3.204 20 H -0.179 1.179 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.087 4.087 24 C 0.007 3.993 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.114 0.886 31 H 0.238 0.762 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.023 0.977 35 H 0.107 0.893 36 H 0.024 0.976 37 H -0.027 1.027 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.028 0.972 41 H 0.108 0.892 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.216 16.396 14.780 22.473 hybrid contribution -0.496 -1.003 -1.433 1.818 sum 3.719 15.393 13.347 20.710 Atomic orbital electron populations 1.20197 0.85602 1.03225 1.03769 1.22619 0.97798 0.89116 0.96210 1.77088 0.87492 1.22729 1.27474 1.48696 1.06165 1.05352 1.53294 1.22441 0.82850 0.94619 1.05427 1.23594 0.98833 0.85392 0.95668 1.20156 0.93945 0.93274 1.25602 1.17581 0.81393 0.84317 0.78116 1.90704 1.28703 1.81491 1.45338 1.48118 1.35824 1.07276 1.42695 1.22150 0.90013 1.00557 0.87552 1.22373 1.00338 0.87780 0.97390 1.62043 1.37060 1.10080 1.16620 1.19402 0.95516 0.92742 0.84340 1.21493 0.97824 1.35984 1.00366 0.90908 1.25955 1.00748 0.94808 0.98328 1.70108 1.33450 1.38781 1.15551 0.85304 0.79118 0.77875 0.78131 1.17866 1.20801 1.20864 1.22453 0.91082 1.01001 0.94165 1.21633 1.02378 0.79892 0.95410 0.89543 0.89531 0.91494 0.88692 0.85824 0.88566 0.76221 0.87735 0.88337 0.97669 0.89328 0.97644 1.02664 0.92807 0.89883 0.97168 0.89238 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 9.93 71.24 0.71 -0.95 16 2 C 0.11 2.92 7.26 43.51 0.32 3.24 16 3 N -0.32 -8.11 12.50 -46.68 -0.58 -8.69 16 4 N -0.36 -6.40 3.98 -367.78 -1.46 -7.87 16 5 C 0.09 0.63 11.44 127.77 1.46 2.09 16 6 C 0.12 2.14 9.12 84.27 0.77 2.91 16 7 C -0.31 -8.25 5.25 -20.15 -0.11 -8.36 16 8 C 0.60 18.45 7.37 86.67 0.64 19.09 16 9 O -0.58 -21.56 15.88 -4.04 -0.06 -21.62 16 10 N -0.61 -17.67 3.01 -821.80 -2.47 -20.15 16 11 C 0.12 3.07 5.52 86.35 0.48 3.54 16 12 C 0.05 1.79 5.46 86.38 0.47 2.27 16 13 N -0.53 -22.02 4.62 -899.82 -4.16 -26.18 16 14 C 0.21 10.78 4.72 85.56 0.40 11.18 16 15 C -0.52 -28.02 8.41 25.60 0.22 -27.81 16 16 H 0.07 3.73 7.13 -2.91 -0.02 3.71 16 17 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 18 N -0.94 -55.82 13.29 21.45 0.28 -55.54 16 19 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 C 0.04 1.53 5.62 86.39 0.49 2.02 16 24 C 0.13 3.90 6.61 86.35 0.57 4.48 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.07 1.77 7.76 -2.39 -0.02 1.75 16 28 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.22 2.24 7.25 -2.91 -0.02 2.22 16 32 H 0.10 2.22 4.94 -2.39 -0.01 2.21 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.09 3.30 6.67 -2.39 -0.02 3.28 16 36 H 0.01 0.31 7.97 -2.39 -0.02 0.29 16 37 H -0.04 -2.58 8.12 -2.39 -0.02 -2.60 16 38 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.08 2.94 7.99 -2.39 -0.02 2.93 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 42 H 0.09 2.73 7.04 -2.39 -0.02 2.72 16 Total: -1.00 -75.09 342.76 1.45 -73.63 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.01 Total: 7.79 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 6.87 Total: 14.12 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -8.39 Total: -118.42 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.62 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -75.09 1.45 -73.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.824 kcal (2) G-P(sol) polarization free energy of solvation -75.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds