Wall clock time and date at job start Tue Mar 31 2020 03:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 119.99975 * 2 1 4 4 C 1.52996 * 109.47097 * 269.99732 * 3 2 1 5 5 O 1.42906 * 109.46877 * 65.00455 * 4 3 2 6 6 C 1.42900 * 114.00033 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46986 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47404 * 64.99733 * 7 6 5 9 9 C 1.34776 * 120.00124 * 179.97438 * 2 1 3 10 10 O 1.21550 * 120.00055 * 174.39966 * 9 2 1 11 11 C 1.47885 * 120.00100 * 354.39869 * 9 2 1 12 12 C 1.39921 * 120.02862 * 147.11862 * 11 9 2 13 13 C 1.38319 * 120.35965 * 180.02562 * 12 11 9 14 14 C 1.37757 * 120.41673 * 359.97438 * 13 12 11 15 15 C 1.40753 * 120.03610 * 0.02562 * 14 13 12 16 16 C 1.41428 * 120.17666 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00026 * 150.24419 * 16 15 14 18 18 C 1.39933 * 120.00380 * 330.24246 * 16 15 14 19 19 N 1.30836 * 119.99843 * 344.45795 * 18 16 15 20 20 Si 1.86799 * 120.00328 * 164.45659 * 18 16 15 21 21 H 1.48494 * 109.47285 * 60.00227 * 20 18 16 22 22 H 1.48507 * 109.47040 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47067 * 299.99893 * 20 18 16 24 24 C 1.38999 * 120.02088 * 327.14035 * 11 9 2 25 25 H 1.08999 * 109.47035 * 269.09911 * 1 2 3 26 26 H 1.08997 * 109.47183 * 29.09513 * 1 2 3 27 27 H 1.08998 * 109.47042 * 149.10072 * 1 2 3 28 28 H 1.09004 * 109.47285 * 30.00019 * 3 2 1 29 29 H 1.09003 * 109.47310 * 149.99825 * 3 2 1 30 30 H 1.08997 * 109.46920 * 184.99682 * 4 3 2 31 31 H 1.08999 * 109.47240 * 305.00109 * 4 3 2 32 32 H 1.09001 * 109.46616 * 299.99520 * 6 5 4 33 33 H 1.08994 * 109.47276 * 59.99146 * 6 5 4 34 34 H 1.08999 * 109.46885 * 184.99560 * 7 6 5 35 35 H 1.09002 * 109.47385 * 304.99308 * 7 6 5 36 36 H 1.00899 * 111.00071 * 179.97438 * 8 7 6 37 37 H 1.00896 * 110.99595 * 303.95049 * 8 7 6 38 38 H 1.08005 * 119.81599 * 359.97438 * 12 11 9 39 39 H 1.08008 * 119.79620 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.98408 * 180.02562 * 14 13 12 41 41 H 0.96998 * 119.99894 * 179.97438 * 19 18 16 42 42 H 1.07990 * 120.20673 * 359.70208 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 8 1.2060 1.9936 -2.0813 6 6 1.3323 2.4164 -3.4405 7 6 -0.0567 2.6896 -4.0208 8 7 -0.6674 3.8245 -3.3158 9 6 2.1389 -1.1672 0.0005 10 8 3.3500 -1.1697 -0.1022 11 6 1.4048 -2.4448 0.1261 12 6 1.8806 -3.5920 -0.5184 13 6 1.1991 -4.7904 -0.4060 14 6 0.0449 -4.8689 0.3418 15 6 -0.4491 -3.7255 0.9973 16 6 -1.6336 -3.8029 1.7662 17 1 -1.7692 -3.1505 2.6162 18 6 -2.6299 -4.7246 1.4257 19 7 -2.6189 -5.2946 0.2481 20 14 -3.9755 -5.1413 2.6525 21 1 -4.7294 -3.9094 2.9977 22 1 -4.9005 -6.1368 2.0535 23 1 -3.3661 -5.7095 3.8817 24 6 0.2414 -2.5068 0.8841 25 1 -0.3633 -0.0162 1.0275 26 1 -0.3633 0.8980 -0.4997 27 1 -0.3633 -0.8818 -0.5277 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1385 0.5139 30 1 3.0732 2.6064 -1.4437 31 1 2.9643 0.9131 -1.9815 32 1 1.9300 3.3270 -3.4836 33 1 1.8207 1.6336 -4.0207 34 1 0.0326 2.9260 -5.0811 35 1 -0.6825 1.8057 -3.8971 36 1 -1.5862 4.0252 -3.6814 37 1 -0.7024 3.6561 -2.3216 38 1 2.7844 -3.5412 -1.1075 39 1 1.5748 -5.6705 -0.9070 40 1 -0.4814 -5.8083 0.4251 41 1 -3.3093 -5.9337 0.0122 42 1 -0.1271 -1.6250 1.3869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602550170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:15 Heat of formation + Delta-G solvation = -59.790769 kcal Electronic energy + Delta-G solvation = -23347.869705 eV Core-core repulsion = 19906.695112 eV Total energy + Delta-G solvation = -3441.174594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.65710 -38.14657 -37.05384 -35.32143 -34.32974 -33.65305 -30.94274 -29.93083 -29.01023 -27.69529 -26.17530 -25.27666 -23.50383 -22.02647 -21.48116 -20.77544 -19.10753 -17.39779 -16.76920 -16.51030 -16.08060 -15.71718 -15.60520 -15.28854 -15.01279 -14.81176 -14.26885 -13.90624 -13.57148 -13.28337 -12.82233 -12.71460 -12.66465 -12.32879 -12.05200 -11.81416 -11.72088 -11.70267 -11.56348 -11.21305 -11.16648 -10.92687 -10.69636 -10.53553 -10.22985 -9.67088 -9.53856 -9.24838 -9.04524 -8.89651 -8.27243 -7.60322 -7.48954 -6.81225 -4.45533 2.25046 2.73905 3.03804 3.05858 3.12858 3.41927 3.57427 3.77240 3.90314 4.39362 4.58604 4.89588 5.06803 5.10890 5.17867 5.31887 5.34903 5.43727 5.52732 5.55278 5.66916 5.70500 5.82769 5.86577 5.98357 6.20508 6.33907 6.39583 6.76323 6.86553 6.89666 6.90053 7.01596 7.12950 7.17176 7.26307 7.35584 7.62606 7.78145 7.89866 7.95705 8.08719 8.49062 8.75624 8.78761 8.83048 10.15983 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.004027 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.930497 B = 6951.225124 C = 7879.617668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.610 5.610 3 C 0.122 3.878 4 C 0.049 3.951 5 O -0.384 6.384 6 C 0.062 3.938 7 C 0.064 3.936 8 N -0.851 5.851 9 C 0.566 3.434 10 O -0.559 6.559 11 C -0.117 4.117 12 C -0.175 4.175 13 C -0.116 4.116 14 C -0.134 4.134 15 C 0.103 3.897 16 C -0.469 4.469 17 H 0.078 0.922 18 C 0.078 3.922 19 N -0.801 5.801 20 Si 0.908 3.092 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.189 4.189 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.339 0.661 37 H 0.349 0.651 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.281 0.719 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.434 11.804 -4.320 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.343 5.343 3 C -0.001 4.001 4 C -0.028 4.028 5 O -0.304 6.304 6 C -0.015 4.015 7 C -0.067 4.067 8 N -0.381 5.381 9 C 0.358 3.642 10 O -0.439 6.439 11 C -0.120 4.120 12 C -0.196 4.196 13 C -0.135 4.135 14 C -0.153 4.153 15 C 0.101 3.899 16 C -0.499 4.499 17 H 0.096 0.904 18 C -0.139 4.139 19 N -0.426 5.426 20 Si 0.732 3.268 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.209 4.209 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.092 0.908 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.359 12.046 -4.717 13.150 hybrid contribution -1.237 -0.927 0.505 1.627 sum 1.122 11.119 -4.212 11.943 Atomic orbital electron populations 1.22095 0.78691 1.03545 1.01419 1.47650 1.07477 1.04985 1.74216 1.21411 0.98510 0.85759 0.94459 1.22972 0.86068 0.99093 0.94700 1.87826 1.29935 1.87703 1.24921 1.22528 0.97279 0.98312 0.83416 1.21783 0.94432 0.92562 0.97949 1.58763 1.27897 1.41944 1.09485 1.19002 0.86814 0.84087 0.74273 1.90651 1.14481 1.87710 1.51031 1.19284 0.97180 0.91877 1.03622 1.20399 1.00969 0.92459 1.05739 1.20662 0.96516 0.96058 1.00223 1.21451 0.94845 0.98939 1.00079 1.17530 0.91863 0.89885 0.90658 1.19454 1.00402 1.17707 1.12374 0.90403 1.25841 0.98937 0.94183 0.94979 1.69784 1.32288 1.22232 1.18344 0.86378 0.80020 0.79080 0.81302 1.19034 1.20390 1.18875 1.21607 0.96807 0.97910 1.04558 0.92681 0.91554 0.89642 0.90028 0.88775 0.92804 0.92753 0.92772 0.93150 0.90024 0.94411 0.84895 0.83750 0.88518 0.88664 0.86580 0.90795 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 8.63 59.85 0.52 1.86 16 2 N -0.61 -10.43 2.84 -182.68 -0.52 -10.95 16 3 C 0.12 1.67 5.77 -4.04 -0.02 1.65 16 4 C 0.05 0.63 6.28 37.16 0.23 0.87 16 5 O -0.38 -4.95 8.70 -35.23 -0.31 -5.25 16 6 C 0.06 0.67 6.28 37.16 0.23 0.91 16 7 C 0.06 0.62 7.21 -3.83 -0.03 0.60 16 8 N -0.85 -8.00 9.62 -10.37 -0.10 -8.10 16 9 C 0.57 11.89 7.38 -12.31 -0.09 11.80 16 10 O -0.56 -12.81 16.41 5.32 0.09 -12.73 16 11 C -0.12 -2.66 5.24 -105.04 -0.55 -3.21 16 12 C -0.18 -4.06 9.61 -38.92 -0.37 -4.43 16 13 C -0.12 -2.68 10.01 -39.73 -0.40 -3.08 16 14 C -0.13 -3.34 8.65 -38.81 -0.34 -3.67 16 15 C 0.10 2.60 5.51 -106.87 -0.59 2.01 16 16 C -0.47 -11.78 9.04 -37.73 -0.34 -12.12 16 17 H 0.08 1.87 7.89 -52.49 -0.41 1.46 16 18 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 19 N -0.80 -19.91 11.18 55.55 0.62 -19.29 16 20 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 21 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 22 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 24 C -0.19 -4.36 7.42 -38.44 -0.29 -4.64 16 25 H 0.05 0.84 6.63 -51.93 -0.34 0.49 16 26 H 0.07 0.92 7.13 -51.93 -0.37 0.55 16 27 H 0.08 1.57 6.10 -51.93 -0.32 1.25 16 28 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 29 H 0.09 1.32 7.51 -51.93 -0.39 0.93 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.34 2.58 9.08 -39.29 -0.36 2.23 16 37 H 0.35 3.42 8.55 -39.29 -0.34 3.08 16 38 H 0.10 2.15 7.96 -52.48 -0.42 1.73 16 39 H 0.10 1.95 8.06 -52.48 -0.42 1.52 16 40 H 0.12 2.97 6.46 -52.49 -0.34 2.63 16 41 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 42 H 0.11 2.31 5.11 -52.49 -0.27 2.05 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -28.69 347.51 -8.19 -36.88 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.07 Total: 10.91 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.12 Total: -9.68 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.00 Total: -38.34 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.22 Total: -17.98 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.69 -8.19 -36.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602550170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.909 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds