Wall clock time and date at job start Tue Mar 31 2020 04:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30855 * 125.41888 * 2 1 4 4 C 1.33320 * 109.68565 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.10817 * 179.97438 * 4 3 2 6 6 C 1.36659 * 107.78513 * 0.02562 * 4 3 2 7 7 C 1.46766 * 126.84475 * 180.02562 * 6 4 3 8 8 O 1.21676 * 119.99744 * 251.74733 * 7 6 4 9 9 N 1.34774 * 120.00340 * 71.74852 * 7 6 4 10 10 C 1.47082 * 120.87912 * 5.36366 * 9 7 6 11 11 C 1.53698 * 108.27655 * 128.75689 * 10 9 7 12 12 N 1.46902 * 109.25366 * 54.08355 * 11 10 9 13 13 C 1.46902 * 111.00020 * 172.60811 * 12 11 10 14 14 C 1.50702 * 109.47156 * 59.59809 * 13 12 11 15 15 H 1.08001 * 120.00088 * 355.12062 * 14 13 12 16 16 C 1.37878 * 120.00143 * 175.11630 * 14 13 12 17 17 N 1.31515 * 119.99851 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00077 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47272 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47329 * 119.99989 * 18 16 14 21 21 H 1.48507 * 109.47110 * 240.00252 * 18 16 14 22 22 C 1.46903 * 111.26987 * 296.75406 * 12 11 10 23 23 C 1.47076 * 120.88332 * 185.64648 * 9 7 6 24 24 N 1.34493 * 125.41770 * 179.97438 * 2 1 3 25 25 H 0.97003 * 126.47013 * 0.02562 * 24 2 1 26 26 H 1.08994 * 109.47423 * 90.01792 * 1 2 3 27 27 H 1.08995 * 109.47083 * 210.02356 * 1 2 3 28 28 H 1.09003 * 109.46807 * 330.02295 * 1 2 3 29 29 H 1.08999 * 109.47169 * 90.02353 * 5 4 3 30 30 H 1.08991 * 109.47215 * 210.02318 * 5 4 3 31 31 H 1.09007 * 109.46970 * 330.02465 * 5 4 3 32 32 H 1.08999 * 109.63006 * 248.52793 * 10 9 7 33 33 H 1.09001 * 109.63155 * 9.10628 * 10 9 7 34 34 H 1.08999 * 109.64940 * 294.08031 * 11 10 9 35 35 H 1.09003 * 109.42248 * 173.94315 * 11 10 9 36 36 H 1.08996 * 109.47378 * 179.60069 * 13 12 11 37 37 H 1.09010 * 109.46906 * 299.60442 * 13 12 11 38 38 H 0.96999 * 119.99720 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.49028 * 303.14898 * 22 12 11 40 40 H 1.08996 * 109.51474 * 183.07834 * 22 12 11 41 41 H 1.08996 * 109.62854 * 350.89688 * 23 9 7 42 42 H 1.09008 * 109.62932 * 111.47602 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 0.0006 5 6 4.7336 1.6360 0.0002 6 6 3.5976 -0.6608 0.0004 7 6 4.8029 -1.4983 0.0013 8 8 5.1150 -2.1163 -0.9993 9 7 5.5639 -1.5829 1.1104 10 6 5.1441 -0.9397 2.3648 11 6 5.2153 -1.9847 3.4896 12 7 6.5592 -2.5775 3.5157 13 6 6.7260 -3.4527 4.6836 14 6 5.7025 -4.5578 4.6336 15 1 4.9489 -4.5612 3.8599 16 6 5.7282 -5.5645 5.5753 17 7 6.6456 -5.5601 6.5176 18 14 4.4600 -6.9345 5.5128 19 1 3.5446 -6.7098 4.3653 20 1 5.1490 -8.2398 5.3487 21 1 3.6777 -6.9430 6.7751 22 6 6.8465 -3.3014 2.2701 23 6 6.8391 -2.3155 1.0969 24 7 2.2865 -1.0961 0.0005 25 1 1.9849 -2.0180 0.0006 26 1 -0.3634 -0.0003 -1.0276 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 5.0193 1.8608 1.0278 30 1 5.5691 1.1605 -0.5134 31 1 4.4694 2.5601 -0.5140 32 1 5.8111 -0.1078 2.5908 33 1 4.1213 -0.5760 2.2654 34 1 4.4765 -2.7660 3.3114 35 1 5.0120 -1.5024 4.4458 36 1 7.7270 -3.8839 4.6746 37 1 6.5888 -2.8716 5.5957 38 1 6.6635 -6.2682 7.1804 39 1 6.0849 -4.0644 2.1089 40 1 7.8259 -3.7744 2.3415 41 1 6.9376 -2.8618 0.1589 42 1 7.6660 -1.6133 1.2035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603263822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:12 Heat of formation + Delta-G solvation = 2.928160 kcal Electronic energy + Delta-G solvation = -24006.489371 eV Core-core repulsion = 20600.327225 eV Total energy + Delta-G solvation = -3406.162146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.34277 -40.99721 -39.01636 -36.12694 -34.55709 -34.30602 -33.23498 -32.06278 -30.21326 -29.94057 -27.91855 -26.76432 -24.65053 -24.29611 -22.86253 -22.11672 -21.39252 -20.21299 -18.96554 -18.29318 -17.97020 -17.03354 -16.81249 -16.49497 -16.11539 -16.03431 -15.57360 -15.25530 -15.03513 -14.79340 -14.31945 -14.10301 -13.97626 -13.74427 -13.62258 -13.35592 -13.26367 -13.03594 -13.00105 -12.95719 -12.59776 -12.53304 -12.26210 -12.03223 -11.84833 -11.76695 -11.54855 -11.04053 -10.97505 -10.64642 -9.90186 -9.35144 -9.10245 -8.20285 -6.39162 0.53852 1.10469 1.31182 1.33630 1.43272 1.71243 1.92475 2.27305 2.32551 3.05467 3.24021 3.27928 3.47336 3.90738 3.96775 4.03893 4.09415 4.23428 4.29995 4.46653 4.53917 4.58037 4.70555 4.72966 4.76210 4.79954 4.83396 4.95095 4.99413 5.06189 5.10245 5.11968 5.17545 5.29856 5.35602 5.56039 5.70122 5.95249 6.10028 6.23489 6.26930 6.40490 6.80550 6.82128 6.91498 7.32479 8.82476 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.004366 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.183438 B = 6412.306294 C = 7135.990850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.237 3.763 3 N -0.516 5.516 4 C 0.059 3.941 5 C -0.073 4.073 6 C -0.097 4.097 7 C 0.597 3.403 8 O -0.574 6.574 9 N -0.589 5.589 10 C 0.127 3.873 11 C 0.052 3.948 12 N -0.533 5.533 13 C 0.200 3.800 14 C -0.557 4.557 15 H 0.050 0.950 16 C 0.017 3.983 17 N -0.922 5.922 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.275 1.275 22 C 0.056 3.944 23 C 0.124 3.876 24 N -0.540 5.540 25 H 0.431 0.569 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.017 0.983 35 H 0.082 0.918 36 H 0.012 0.988 37 H 0.011 0.989 38 H 0.266 0.734 39 H 0.013 0.987 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.380 12.295 -11.571 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.027 4.027 3 N -0.237 5.237 4 C -0.075 4.075 5 C -0.131 4.131 6 C -0.214 4.214 7 C 0.384 3.616 8 O -0.454 6.454 9 N -0.320 5.320 10 C 0.005 3.995 11 C -0.077 4.077 12 N -0.256 5.256 13 C 0.073 3.927 14 C -0.596 4.596 15 H 0.068 0.932 16 C -0.183 4.183 17 N -0.561 5.561 18 Si 0.778 3.222 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.201 1.201 22 C -0.074 4.074 23 C 0.002 3.998 24 N -0.145 5.145 25 H 0.272 0.728 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.035 0.965 35 H 0.100 0.900 36 H 0.030 0.970 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.055 13.064 -11.885 19.847 hybrid contribution -0.779 -3.175 0.338 3.287 sum -9.833 9.888 -11.547 18.106 Atomic orbital electron populations 1.20490 0.81151 1.05874 1.05293 1.24160 0.97273 0.80540 1.00682 1.70024 1.01647 1.29245 1.22830 1.21280 0.94135 0.89847 1.02194 1.20229 0.91533 0.97457 1.03874 1.20387 0.85078 0.95228 1.20702 1.17127 0.82300 0.79499 0.82651 1.90792 1.73444 1.46690 1.34430 1.48149 1.21850 1.51819 1.10179 1.22027 1.01476 0.95122 0.80883 1.22350 0.90296 0.96182 0.98850 1.62435 1.26065 1.34251 1.02870 1.19449 0.95342 0.89692 0.88180 1.21957 1.15089 1.09856 1.12701 0.93198 1.25724 0.97431 1.00206 0.94975 1.70046 1.35244 1.34559 1.16265 0.85599 0.79246 0.79318 0.78034 1.19752 1.20437 1.20100 1.22216 1.00870 0.94575 0.89705 1.21836 0.84734 0.94908 0.98302 1.43082 1.04635 1.11145 1.55641 0.72838 0.88215 0.88403 0.87981 0.89161 0.91502 0.89667 0.88391 0.89222 0.96486 0.89980 0.96955 0.97054 0.92514 0.96818 0.90142 0.89275 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.51 71.24 0.75 0.01 16 2 C 0.24 4.86 8.12 138.20 1.12 5.99 16 3 N -0.52 -13.06 11.20 -175.57 -1.97 -15.03 16 4 C 0.06 1.50 6.74 41.96 0.28 1.79 16 5 C -0.07 -1.49 10.24 71.24 0.73 -0.76 16 6 C -0.10 -2.65 5.13 40.01 0.21 -2.45 16 7 C 0.60 18.81 7.18 86.47 0.62 19.43 16 8 O -0.57 -21.75 16.56 -4.27 -0.07 -21.82 16 9 N -0.59 -17.47 3.00 -821.66 -2.47 -19.94 16 10 C 0.13 3.47 6.44 86.50 0.56 4.03 16 11 C 0.05 1.85 5.17 86.54 0.45 2.30 16 12 N -0.53 -21.25 4.83 -898.84 -4.34 -25.59 16 13 C 0.20 9.99 5.11 85.56 0.44 10.43 16 14 C -0.56 -29.90 7.76 25.60 0.20 -29.70 16 15 H 0.05 2.69 5.88 -2.91 -0.02 2.68 16 16 C 0.02 0.91 5.46 84.65 0.46 1.37 16 17 N -0.92 -53.29 13.29 21.45 0.28 -53.01 16 18 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 C 0.06 2.07 5.24 86.38 0.45 2.52 16 23 C 0.12 3.76 6.61 86.35 0.57 4.33 16 24 N -0.54 -12.09 6.19 -176.11 -1.09 -13.18 16 25 H 0.43 7.89 8.96 -92.71 -0.83 7.06 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.38 7.94 -2.39 -0.02 1.36 16 31 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.09 2.29 6.22 -2.39 -0.01 2.27 16 34 H 0.02 0.68 6.62 -2.39 -0.02 0.67 16 35 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 36 H 0.01 0.67 8.07 -2.39 -0.02 0.65 16 37 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.01 0.58 7.10 -2.39 -0.02 0.56 16 40 H 0.08 2.97 8.06 -2.39 -0.02 2.95 16 41 H 0.09 2.75 7.04 -2.39 -0.02 2.73 16 42 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 Total: -1.00 -69.71 343.09 -0.58 -70.29 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.21 Total: 13.87 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 6.84 Total: 19.27 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -9.58 Total: -126.74 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.07 Total: -21.82 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -69.71 -0.58 -70.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603263822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.217 kcal (2) G-P(sol) polarization free energy of solvation -69.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds