Wall clock time and date at job start Tue Mar 31 2020 03:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35516 * 117.00246 * 2 1 4 4 C 1.39436 * 120.47028 * 179.97438 * 3 2 1 5 5 C 1.38193 * 118.50666 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.36614 * 179.97438 * 5 4 3 7 7 N 1.32460 * 119.27399 * 359.97438 * 5 4 3 8 8 C 1.32464 * 120.88468 * 0.02562 * 7 5 4 9 9 N 1.38398 * 119.19268 * 179.97438 * 8 7 5 10 10 C 1.46959 * 110.99430 * 303.79885 * 9 8 7 11 11 C 1.53055 * 109.36370 * 176.80583 * 10 9 8 12 12 N 1.46961 * 109.36024 * 58.40077 * 11 10 9 13 13 C 1.46904 * 110.99918 * 176.81187 * 12 11 10 14 14 C 1.50700 * 109.46977 * 58.97657 * 13 12 11 15 15 H 1.08000 * 120.00180 * 5.01495 * 14 13 12 16 16 C 1.37880 * 120.00048 * 185.00796 * 14 13 12 17 17 N 1.31516 * 119.99907 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00238 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46764 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47388 * 120.00017 * 18 16 14 21 21 H 1.48496 * 109.47244 * 240.00514 * 18 16 14 22 22 C 1.46951 * 110.88389 * 300.67966 * 12 11 10 23 23 C 1.46953 * 111.00613 * 180.02562 * 9 8 7 24 24 N 1.32491 * 121.62504 * 359.71198 * 8 7 5 25 25 H 1.09001 * 109.47414 * 300.00185 * 1 2 3 26 26 H 1.09002 * 109.47486 * 60.00316 * 1 2 3 27 27 H 1.09000 * 109.46995 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.74249 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.47324 * 89.99224 * 6 5 4 30 30 H 1.08999 * 109.47324 * 209.99654 * 6 5 4 31 31 H 1.09004 * 109.46685 * 330.00105 * 6 5 4 32 32 H 1.08997 * 109.49322 * 296.77293 * 10 9 8 33 33 H 1.09002 * 109.49188 * 56.84453 * 10 9 8 34 34 H 1.08998 * 109.48886 * 298.43987 * 11 10 9 35 35 H 1.08994 * 109.48899 * 178.36862 * 11 10 9 36 36 H 1.08991 * 109.47310 * 178.98260 * 13 12 11 37 37 H 1.09005 * 109.46591 * 298.98015 * 13 12 11 38 38 H 0.96992 * 120.00117 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.48722 * 299.35694 * 22 12 11 40 40 H 1.08996 * 109.49085 * 179.28965 * 22 12 11 41 41 H 1.09004 * 109.48197 * 303.15251 * 23 9 8 42 42 H 1.09002 * 109.48688 * 63.19561 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4360 1.2918 0.0005 5 6 4.0209 2.5438 0.0011 6 6 5.5214 2.6837 0.0022 7 7 3.2482 3.6197 0.0005 8 6 1.9282 3.5088 0.0000 9 7 1.1544 4.6562 0.0000 10 6 1.4923 5.5192 1.1405 11 6 0.6738 6.8100 1.0602 12 7 -0.7582 6.4796 1.0595 13 6 -1.5795 7.6977 1.0595 14 6 -1.2526 8.5239 -0.1577 15 1 -0.5697 8.1420 -0.9021 16 6 -1.8256 9.7673 -0.3211 17 7 -2.6570 10.2325 0.5855 18 14 -1.4211 10.7911 -1.8302 19 1 -0.4674 10.0472 -2.6919 20 1 -2.6665 11.0639 -2.5918 21 1 -0.8082 12.0757 -1.4071 22 6 -1.0961 5.6167 -0.0809 23 6 -0.2776 4.3259 0.0000 24 7 1.3303 2.3264 -0.0057 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0432 0.3986 0.0005 29 1 5.8840 2.7174 -1.0251 30 1 5.8002 3.6036 0.5163 31 1 5.9653 1.8312 0.5164 32 1 1.2618 4.9997 2.0705 33 1 2.5550 5.7602 1.1119 34 1 0.9244 7.3431 0.1431 35 1 0.9015 7.4391 1.9207 36 1 -2.6344 7.4245 1.0408 37 1 -1.3701 8.2770 1.9588 38 1 -3.0598 11.1073 0.4708 39 1 -0.8655 6.1362 -1.0110 40 1 -2.1587 5.3758 -0.0523 41 1 -0.5055 3.6966 -0.8604 42 1 -0.5277 3.7927 0.9171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609260204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:50 Heat of formation + Delta-G solvation = 37.397860 kcal Electronic energy + Delta-G solvation = -23705.799834 eV Core-core repulsion = 20301.132407 eV Total energy + Delta-G solvation = -3404.667428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41862 -39.18320 -38.22852 -35.51304 -33.73298 -32.49743 -31.41756 -30.50091 -28.96454 -27.95778 -26.95595 -25.24666 -23.57689 -22.93021 -22.14117 -21.43298 -19.27097 -18.46478 -17.78981 -16.58641 -16.35403 -16.13921 -15.46912 -14.99788 -14.90667 -14.75792 -14.29055 -14.11589 -14.03653 -13.60217 -13.34455 -13.13083 -12.77437 -12.53159 -12.19498 -12.00941 -11.95477 -11.68284 -11.14059 -10.98531 -10.88139 -10.75516 -10.62494 -10.48694 -10.18103 -10.15639 -9.85952 -9.62438 -9.55480 -9.27361 -8.44112 -8.23926 -7.23276 -6.03652 -4.12515 0.94355 1.15546 2.74530 3.23495 3.27187 3.35584 3.40313 3.70277 3.97669 4.41232 4.62555 4.71289 4.98627 5.03362 5.08980 5.10975 5.12067 5.27061 5.34284 5.39230 5.40682 5.45682 5.51938 5.63282 5.73323 5.81182 5.91317 6.00794 6.13029 6.23653 6.54384 6.65783 6.73995 6.76137 6.89005 6.92358 7.24262 7.36509 7.51292 7.88646 7.99607 8.19135 8.21782 8.27441 8.97918 9.54767 11.01633 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.003709 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.907304 B = 7547.216795 C = 8181.359818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.304 6.304 3 C 0.386 3.614 4 C -0.288 4.288 5 C 0.223 3.777 6 C -0.103 4.103 7 N -0.553 5.553 8 C 0.542 3.458 9 N -0.455 5.455 10 C 0.073 3.927 11 C 0.063 3.937 12 N -0.544 5.544 13 C 0.187 3.813 14 C -0.549 4.549 15 H 0.060 0.940 16 C 0.065 3.935 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.059 3.941 23 C 0.076 3.924 24 N -0.609 5.609 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.147 0.853 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.400 -19.010 0.093 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.208 6.208 3 C 0.198 3.802 4 C -0.313 4.313 5 C 0.078 3.922 6 C -0.160 4.160 7 N -0.276 5.276 8 C 0.187 3.813 9 N -0.174 5.174 10 C -0.053 4.053 11 C -0.066 4.066 12 N -0.269 5.269 13 C 0.062 3.938 14 C -0.588 4.588 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.070 4.070 23 C -0.051 4.051 24 N -0.346 5.346 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.165 0.835 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.746 -18.282 0.159 21.207 hybrid contribution 0.235 0.072 -1.174 1.199 sum 10.981 -18.210 -1.014 21.289 Atomic orbital electron populations 1.22942 0.76623 1.03130 1.03048 1.86217 1.23455 1.24207 1.86911 1.19899 0.89281 0.84412 0.86603 1.21460 0.92473 1.00276 1.17124 1.21338 0.97037 0.86841 0.87014 1.20756 0.87383 1.04084 1.03772 1.67941 1.04335 1.33236 1.22126 1.20824 0.86889 0.86933 0.86680 1.58600 1.06489 1.10645 1.41618 1.22404 1.01106 0.93583 0.88173 1.21991 0.88842 0.93434 1.02315 1.62747 1.03990 1.19984 1.40157 1.19748 0.92490 0.84843 0.96758 1.21797 1.27486 1.02182 1.07369 0.92237 1.24954 0.94847 0.97642 0.96281 1.69952 1.29958 1.18765 1.34309 0.86593 0.78241 0.80310 0.83236 1.19761 1.20988 1.20934 1.22046 0.98297 0.91879 0.94763 1.22217 0.82932 0.98012 1.01985 1.68017 1.41341 0.98532 1.26687 0.91899 0.91915 0.88396 0.83524 0.89544 0.89662 0.90090 0.93590 0.89128 0.92686 0.90349 0.95327 0.94591 0.92868 0.93244 0.90554 0.90201 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.41 101.05 1.05 1.41 16 2 O -0.30 -3.62 10.49 -18.24 -0.19 -3.81 16 3 C 0.39 5.23 7.53 -16.72 -0.13 5.11 16 4 C -0.29 -3.37 9.79 -39.15 -0.38 -3.75 16 5 C 0.22 2.71 6.81 -82.34 -0.56 2.15 16 6 C -0.10 -0.80 10.21 36.01 0.37 -0.43 16 7 N -0.55 -8.51 9.65 -10.22 -0.10 -8.61 16 8 C 0.54 8.95 7.17 -322.86 -2.32 6.63 16 9 N -0.45 -7.94 4.77 -175.24 -0.84 -8.77 16 10 C 0.07 1.24 5.46 -3.76 -0.02 1.22 16 11 C 0.06 1.24 5.24 -3.76 -0.02 1.22 16 12 N -0.54 -11.58 4.92 -235.91 -1.16 -12.74 16 13 C 0.19 4.74 5.14 -4.97 -0.03 4.72 16 14 C -0.55 -14.94 7.66 -34.44 -0.26 -15.21 16 15 H 0.06 1.63 5.82 -52.49 -0.31 1.33 16 16 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 17 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 18 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.06 1.15 5.32 -3.77 -0.02 1.13 16 23 C 0.08 1.28 4.76 -3.77 -0.02 1.26 16 24 N -0.61 -9.34 7.63 -13.98 -0.11 -9.44 16 25 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 26 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.45 7.64 -51.93 -0.40 1.06 16 34 H 0.05 1.20 6.62 -51.93 -0.34 0.86 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.03 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.05 1.07 6.78 -51.93 -0.35 0.72 16 40 H 0.08 1.44 8.12 -51.93 -0.42 1.01 16 41 H 0.08 1.28 7.79 -51.93 -0.40 0.88 16 42 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -30.97 341.05 -10.39 -41.36 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.42 Total: -1.47 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.43 Total: 7.18 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -1.47 Total: -64.84 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.19 Total: -3.81 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.97 -10.39 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609260204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.755 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds