Wall clock time and date at job start Tue Mar 31 2020 04:17:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.39861 * 126.04237 * 2 1
4 4 N 1.30840 * 108.20101 * 179.74482 * 3 2 1
5 5 N 1.40078 * 108.20624 * 0.40393 * 4 3 2
6 6 C 1.46501 * 126.03825 * 179.85082 * 5 4 3
7 7 C 1.50693 * 109.47367 * 304.69679 * 6 5 4
8 8 O 1.21285 * 119.99986 * 359.97438 * 7 6 5
9 9 N 1.34774 * 120.00215 * 179.97438 * 7 6 5
10 10 C 1.46504 * 120.00198 * 179.97438 * 9 7 6
11 11 C 1.53036 * 109.46233 * 275.02928 * 10 9 7
12 12 C 1.53192 * 109.31467 * 178.59879 * 11 10 9
13 13 N 1.46928 * 108.76344 * 54.65808 * 12 11 10
14 14 C 1.36932 * 120.63456 * 126.36287 * 13 12 11
15 15 H 1.07999 * 120.00200 * 208.02025 * 14 13 12
16 16 C 1.38811 * 119.99693 * 28.01997 * 14 13 12
17 17 N 1.31616 * 120.00189 * 17.52873 * 16 14 13
18 18 Si 1.86811 * 119.99934 * 197.52594 * 16 14 13
19 19 H 1.48500 * 109.46821 * 94.06390 * 18 16 14
20 20 H 1.48498 * 109.47033 * 214.06704 * 18 16 14
21 21 H 1.48495 * 109.46884 * 334.07055 * 18 16 14
22 22 C 1.46928 * 118.73492 * 306.38323 * 13 12 11
23 23 C 1.53043 * 109.45878 * 154.97559 * 10 9 7
24 24 C 1.34943 * 107.92474 * 359.59191 * 5 4 3
25 25 H 1.09002 * 109.47152 * 269.99873 * 1 2 3
26 26 H 1.09007 * 109.47013 * 29.99378 * 1 2 3
27 27 H 1.08999 * 109.47782 * 149.99478 * 1 2 3
28 28 H 1.08001 * 125.90251 * 0.02562 * 3 2 1
29 29 H 1.08996 * 109.47032 * 184.68913 * 6 5 4
30 30 H 1.09003 * 109.46725 * 64.69700 * 6 5 4
31 31 H 0.97002 * 120.00166 * 359.72517 * 9 7 6
32 32 H 1.08997 * 109.45622 * 35.00509 * 10 9 7
33 33 H 1.09001 * 109.49819 * 298.56609 * 11 10 9
34 34 H 1.08998 * 109.49990 * 58.66365 * 11 10 9
35 35 H 1.09000 * 109.59661 * 294.87243 * 12 11 10
36 36 H 1.08995 * 109.70361 * 174.50211 * 12 11 10
37 37 H 0.97004 * 119.99871 * 180.02562 * 17 16 14
38 38 H 1.08995 * 109.59111 * 293.82099 * 22 13 12
39 39 H 1.09007 * 109.70198 * 173.46757 * 22 13 12
40 40 H 1.09000 * 109.49382 * 301.33622 * 23 10 9
41 41 H 1.09003 * 109.49989 * 61.43438 * 23 10 9
42 42 H 1.08007 * 126.12662 * 180.21945 * 24 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3299 1.1309 0.0000
4 7 3.5754 0.7300 0.0055
5 7 3.5844 -0.6707 -0.0001
6 6 4.7745 -1.5250 0.0001
7 6 5.6579 -1.1562 -1.1637
8 8 5.3258 -0.2676 -1.9193
9 7 6.8169 -1.8139 -1.3649
10 6 7.6755 -1.4557 -2.4967
11 6 7.2053 -2.1995 -3.7488
12 6 8.0832 -1.7959 -4.9375
13 7 9.4904 -2.0333 -4.5878
14 6 10.2914 -2.7947 -5.3963
15 1 11.1240 -3.3380 -4.9744
16 6 10.0332 -2.8682 -6.7582
17 7 9.2638 -1.9675 -7.3318
18 14 10.7779 -4.2457 -7.7770
19 1 9.8110 -5.3687 -7.8729
20 1 11.0881 -3.7419 -9.1390
21 1 12.0263 -4.7214 -7.1288
22 6 10.0216 -1.4385 -3.3538
23 6 9.1217 -1.8458 -2.1829
24 6 2.3031 -1.0942 -0.0001
25 1 -0.3633 0.0000 1.0277
26 1 -0.3633 0.8901 -0.5138
27 1 -0.3634 -0.8899 -0.5139
28 1 1.9952 2.1577 0.0004
29 1 4.4726 -2.5685 -0.0891
30 1 5.3228 -1.3838 0.9316
31 1 7.0845 -2.5220 -0.7582
32 1 7.6186 -0.3811 -2.6697
33 1 7.2855 -3.2741 -3.5852
34 1 6.1677 -1.9394 -3.9583
35 1 7.9351 -0.7390 -5.1592
36 1 7.8178 -2.3931 -5.8098
37 1 9.0831 -2.0191 -8.2835
38 1 10.0316 -0.3525 -3.4464
39 1 11.0352 -1.7995 -3.1785
40 1 9.4484 -1.3339 -1.2778
41 1 9.1838 -2.9239 -2.0343
42 1 1.9723 -2.1224 -0.0005
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000609329766.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:17:40
Heat of formation + Delta-G solvation = 63.752197 kcal
Electronic energy + Delta-G solvation = -23137.503942 eV
Core-core repulsion = 19733.979324 eV
Total energy + Delta-G solvation = -3403.524618 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.32960 -39.61914 -37.37081 -34.47980 -33.79194 -32.21714 -31.65552 -30.18517
-29.68762 -28.38401 -25.86561 -24.81045 -22.40924 -22.24854 -21.24829 -20.54184
-20.09820 -19.29129 -17.31733 -17.15580 -16.61307 -15.76412 -15.43909 -14.83606
-14.61600 -14.34913 -13.90279 -13.68474 -13.53514 -13.44423 -13.19505 -13.05548
-12.89150 -12.66307 -12.41646 -12.24036 -12.01949 -11.52538 -11.17139 -10.95700
-10.76427 -10.56418 -10.43478 -10.25023 -10.12457 -10.01563 -9.78766 -9.63983
-9.31292 -8.77393 -8.45267 -8.40529 -6.71236 -5.80260 -3.23489 1.78212
2.28819 2.63384 2.76464 3.23758 3.36664 3.43302 3.45052 4.34961
4.47725 4.60613 4.68099 4.78316 4.93153 5.15017 5.26159 5.32697
5.38277 5.42389 5.54469 5.59202 5.70047 5.78642 5.85476 6.03465
6.04095 6.20264 6.28625 6.38635 6.55459 6.58368 6.61848 6.73281
6.81888 6.89524 6.91347 7.33849 7.58570 7.65864 7.66528 7.77992
8.29403 8.42988 9.18832 9.82178 10.38962 11.28291
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.031256 B = 0.002937 C = 0.002821
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 895.623200 B = 9530.933413 C = 9923.783391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C -0.242 4.242
3 C 0.042 3.958
4 N -0.263 5.263
5 N -0.361 5.361
6 C 0.115 3.885
7 C 0.494 3.506
8 O -0.508 6.508
9 N -0.723 5.723
10 C 0.152 3.848
11 C -0.145 4.145
12 C 0.174 3.826
13 N -0.592 5.592
14 C -0.255 4.255
15 H 0.067 0.933
16 C 0.003 3.997
17 N -0.900 5.900
18 Si 0.903 3.097
19 H -0.288 1.288
20 H -0.291 1.291
21 H -0.278 1.278
22 C 0.148 3.852
23 C -0.138 4.138
24 C 0.050 3.950
25 H 0.058 0.942
26 H 0.062 0.938
27 H 0.058 0.942
28 H 0.181 0.819
29 H 0.122 0.878
30 H 0.112 0.888
31 H 0.395 0.605
32 H 0.082 0.918
33 H 0.055 0.945
34 H 0.051 0.949
35 H 0.020 0.980
36 H 0.089 0.911
37 H 0.254 0.746
38 H 0.020 0.980
39 H 0.059 0.941
40 H 0.056 0.944
41 H 0.063 0.937
42 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.124 -1.194 18.108 22.395
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.253 4.253
3 C -0.146 4.146
4 N -0.083 5.083
5 N -0.143 5.143
6 C -0.010 4.010
7 C 0.277 3.723
8 O -0.382 6.382
9 N -0.375 5.375
10 C 0.049 3.951
11 C -0.186 4.186
12 C 0.047 3.953
13 N -0.315 5.315
14 C -0.385 4.385
15 H 0.084 0.916
16 C -0.196 4.196
17 N -0.544 5.544
18 Si 0.733 3.267
19 H -0.215 1.215
20 H -0.217 1.217
21 H -0.204 1.204
22 C 0.021 3.979
23 C -0.178 4.178
24 C -0.095 4.095
25 H 0.077 0.923
26 H 0.081 0.919
27 H 0.077 0.923
28 H 0.198 0.802
29 H 0.140 0.860
30 H 0.129 0.871
31 H 0.228 0.772
32 H 0.100 0.900
33 H 0.074 0.926
34 H 0.070 0.930
35 H 0.039 0.961
36 H 0.107 0.893
37 H 0.064 0.936
38 H 0.038 0.962
39 H 0.077 0.923
40 H 0.074 0.926
41 H 0.082 0.918
42 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -12.024 -0.249 17.352 21.112
hybrid contribution -0.357 -1.393 -0.327 1.475
sum -12.381 -1.642 17.025 21.115
Atomic orbital electron populations
1.20029 0.89381 1.02141 1.01264 1.20112 0.96997 0.91933 1.16297
1.23824 0.90063 0.99785 1.00882 1.77498 1.20890 0.88161 1.21715
1.47936 1.04363 1.04863 1.57152 1.21505 0.85565 0.94197 0.99775
1.20435 0.82411 0.83061 0.86369 1.90810 1.71834 1.29573 1.45968
1.46264 1.21407 1.38649 1.31200 1.21062 0.88828 1.00321 0.84849
1.22551 0.99748 0.99536 0.96737 1.20749 0.82007 0.98616 0.93899
1.44107 1.06636 1.58226 1.22548 1.19188 1.10874 1.20296 0.88144
0.91573 1.25074 0.99952 0.98061 0.96551 1.70046 1.41103 1.32956
1.10334 0.86272 0.78812 0.81978 0.79678 1.21490 1.21749 1.20373
1.20839 0.95196 0.95677 0.86216 1.22337 0.94415 1.01313 0.99730
1.22279 0.83852 1.00029 1.03301 0.92319 0.91887 0.92278 0.80247
0.85969 0.87061 0.77180 0.90015 0.92645 0.93017 0.96149 0.89272
0.93553 0.96184 0.92268 0.92583 0.91808 0.81148
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.53 10.37 36.01 0.37 -0.15 16
2 C -0.24 -2.60 6.10 -105.06 -0.64 -3.24 16
3 C 0.04 0.52 11.96 -17.37 -0.21 0.31 16
4 N -0.26 -4.00 11.66 30.62 0.36 -3.65 16
5 N -0.36 -4.55 3.39 -62.55 -0.21 -4.76 16
6 C 0.12 1.12 6.99 -5.20 -0.04 1.08 16
7 C 0.49 7.09 7.82 -10.99 -0.09 7.00 16
8 O -0.51 -10.09 15.38 5.55 0.09 -10.00 16
9 N -0.72 -9.44 5.08 -53.77 -0.27 -9.71 16
10 C 0.15 2.61 2.42 -67.89 -0.16 2.45 16
11 C -0.15 -2.88 5.65 -26.61 -0.15 -3.03 16
12 C 0.17 4.25 5.31 -3.71 -0.02 4.23 16
13 N -0.59 -14.77 2.99 -172.32 -0.52 -15.28 16
14 C -0.26 -6.95 9.58 -15.06 -0.14 -7.10 16
15 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16
16 C 0.00 0.07 4.90 -17.43 -0.09 -0.01 16
17 N -0.90 -26.42 11.22 55.49 0.62 -25.80 16
18 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16
19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
22 C 0.15 3.03 6.51 -3.71 -0.02 3.01 16
23 C -0.14 -2.24 5.55 -26.61 -0.15 -2.38 16
24 C 0.05 0.52 11.36 -17.22 -0.20 0.33 16
25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
26 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16
27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
28 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16
29 H 0.12 0.70 8.07 -51.93 -0.42 0.28 16
30 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16
31 H 0.39 3.65 8.60 -40.82 -0.35 3.30 16
32 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16
33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16
34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16
35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
36 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16
37 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16
38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
39 H 0.06 1.16 7.94 -51.92 -0.41 0.75 16
40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
42 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16
LS Contribution 347.14 15.07 5.23 5.23
Total: -1.00 -35.79 347.14 -7.78 -43.57
By element:
Atomic # 1 Polarization: 7.85 SS G_CDS: -6.51 Total: 1.33 kcal
Atomic # 6 Polarization: 4.01 SS G_CDS: -1.53 Total: 2.48 kcal
Atomic # 7 Polarization: -59.18 SS G_CDS: -0.02 Total: -59.20 kcal
Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal
Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -35.79 -7.78 -43.57 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609329766.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.323 kcal
(2) G-P(sol) polarization free energy of solvation -35.795 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.528 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.752 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds