Wall clock time and date at job start Tue Mar 31 2020 04:17:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.39861 * 126.04237 * 2 1
4 4 N 1.30840 * 108.20101 * 179.74482 * 3 2 1
5 5 N 1.40078 * 108.20624 * 0.40393 * 4 3 2
6 6 C 1.46501 * 126.03825 * 179.85082 * 5 4 3
7 7 C 1.50693 * 109.47367 * 304.69679 * 6 5 4
8 8 O 1.21285 * 119.99986 * 359.97438 * 7 6 5
9 9 N 1.34774 * 120.00215 * 179.97438 * 7 6 5
10 10 C 1.46504 * 120.00198 * 179.97438 * 9 7 6
11 11 C 1.53036 * 109.46233 * 275.02928 * 10 9 7
12 12 C 1.53192 * 109.31467 * 178.59879 * 11 10 9
13 13 N 1.46928 * 108.76344 * 54.65808 * 12 11 10
14 14 C 1.36932 * 120.63456 * 126.36287 * 13 12 11
15 15 H 1.07999 * 120.00200 * 208.02025 * 14 13 12
16 16 C 1.38811 * 119.99693 * 28.01997 * 14 13 12
17 17 N 1.31616 * 120.00189 * 17.52873 * 16 14 13
18 18 Si 1.86811 * 119.99934 * 197.52594 * 16 14 13
19 19 H 1.48500 * 109.46821 * 94.06390 * 18 16 14
20 20 H 1.48498 * 109.47033 * 214.06704 * 18 16 14
21 21 H 1.48495 * 109.46884 * 334.07055 * 18 16 14
22 22 C 1.46928 * 118.73492 * 306.38323 * 13 12 11
23 23 C 1.53043 * 109.45878 * 154.97559 * 10 9 7
24 24 C 1.34943 * 107.92474 * 359.59191 * 5 4 3
25 25 H 1.09002 * 109.47152 * 269.99873 * 1 2 3
26 26 H 1.09007 * 109.47013 * 29.99378 * 1 2 3
27 27 H 1.08999 * 109.47782 * 149.99478 * 1 2 3
28 28 H 1.08001 * 125.90251 * 0.02562 * 3 2 1
29 29 H 1.08996 * 109.47032 * 184.68913 * 6 5 4
30 30 H 1.09003 * 109.46725 * 64.69700 * 6 5 4
31 31 H 0.97002 * 120.00166 * 359.72517 * 9 7 6
32 32 H 1.08997 * 109.45622 * 35.00509 * 10 9 7
33 33 H 1.09001 * 109.49819 * 298.56609 * 11 10 9
34 34 H 1.08998 * 109.49990 * 58.66365 * 11 10 9
35 35 H 1.09000 * 109.59661 * 294.87243 * 12 11 10
36 36 H 1.08995 * 109.70361 * 174.50211 * 12 11 10
37 37 H 0.97004 * 119.99871 * 180.02562 * 17 16 14
38 38 H 1.08995 * 109.59111 * 293.82099 * 22 13 12
39 39 H 1.09007 * 109.70198 * 173.46757 * 22 13 12
40 40 H 1.09000 * 109.49382 * 301.33622 * 23 10 9
41 41 H 1.09003 * 109.49989 * 61.43438 * 23 10 9
42 42 H 1.08007 * 126.12662 * 180.21945 * 24 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3299 1.1309 0.0000
4 7 3.5754 0.7300 0.0055
5 7 3.5844 -0.6707 -0.0001
6 6 4.7745 -1.5250 0.0001
7 6 5.6579 -1.1562 -1.1637
8 8 5.3258 -0.2676 -1.9193
9 7 6.8169 -1.8139 -1.3649
10 6 7.6755 -1.4557 -2.4967
11 6 7.2053 -2.1995 -3.7488
12 6 8.0832 -1.7959 -4.9375
13 7 9.4904 -2.0333 -4.5878
14 6 10.2914 -2.7947 -5.3963
15 1 11.1240 -3.3380 -4.9744
16 6 10.0332 -2.8682 -6.7582
17 7 9.2638 -1.9675 -7.3318
18 14 10.7779 -4.2457 -7.7770
19 1 9.8110 -5.3687 -7.8729
20 1 11.0881 -3.7419 -9.1390
21 1 12.0263 -4.7214 -7.1288
22 6 10.0216 -1.4385 -3.3538
23 6 9.1217 -1.8458 -2.1829
24 6 2.3031 -1.0942 -0.0001
25 1 -0.3633 0.0000 1.0277
26 1 -0.3633 0.8901 -0.5138
27 1 -0.3634 -0.8899 -0.5139
28 1 1.9952 2.1577 0.0004
29 1 4.4726 -2.5685 -0.0891
30 1 5.3228 -1.3838 0.9316
31 1 7.0845 -2.5220 -0.7582
32 1 7.6186 -0.3811 -2.6697
33 1 7.2855 -3.2741 -3.5852
34 1 6.1677 -1.9394 -3.9583
35 1 7.9351 -0.7390 -5.1592
36 1 7.8178 -2.3931 -5.8098
37 1 9.0831 -2.0191 -8.2835
38 1 10.0316 -0.3525 -3.4464
39 1 11.0352 -1.7995 -3.1785
40 1 9.4484 -1.3339 -1.2778
41 1 9.1838 -2.9239 -2.0343
42 1 1.9723 -2.1224 -0.0005
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000609329766.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:17:40
Heat of formation + Delta-G solvation = 38.256406 kcal
Electronic energy + Delta-G solvation = -23138.609522 eV
Core-core repulsion = 19733.979324 eV
Total energy + Delta-G solvation = -3404.630198 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.17140 -40.84589 -38.96834 -36.05745 -34.66642 -33.91787 -32.48312 -31.84554
-31.35068 -29.34294 -27.08257 -26.23245 -23.98403 -23.86478 -22.39633 -21.46944
-21.20897 -20.77099 -18.90521 -18.13873 -17.96351 -17.07060 -16.61331 -16.46833
-15.84370 -15.43179 -15.39312 -15.29015 -14.85075 -14.58393 -14.43808 -14.14833
-14.10163 -13.87730 -13.51909 -13.22322 -13.07632 -13.03325 -12.67225 -12.65286
-12.62477 -12.15831 -12.04378 -11.89416 -11.57364 -11.47388 -11.38445 -11.07269
-10.61147 -10.30449 -10.04105 -9.19813 -8.75145 -7.89771 -5.36585 0.95594
1.46759 1.47675 1.53691 1.56182 1.57659 1.93345 2.18868 2.50009
3.25857 3.56055 3.65247 3.75849 3.86730 4.01234 4.05336 4.16382
4.22847 4.29714 4.44016 4.51619 4.62865 4.63444 4.76945 4.83211
4.94551 5.01478 5.04311 5.04467 5.09947 5.27294 5.28370 5.34805
5.42123 5.50307 5.61518 5.65941 5.77331 6.13889 6.35760 6.57554
6.80533 7.10363 7.26504 7.81241 8.34375 9.17447
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.031256 B = 0.002937 C = 0.002821
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 895.623200 B = 9530.933413 C = 9923.783391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C -0.257 4.257
3 C 0.027 3.973
4 N -0.322 5.322
5 N -0.372 5.372
6 C 0.119 3.881
7 C 0.490 3.510
8 O -0.571 6.571
9 N -0.705 5.705
10 C 0.164 3.836
11 C -0.127 4.127
12 C 0.183 3.817
13 N -0.609 5.609
14 C -0.261 4.261
15 H 0.076 0.924
16 C -0.056 4.056
17 N -0.940 5.940
18 Si 0.971 3.029
19 H -0.285 1.285
20 H -0.299 1.299
21 H -0.262 1.262
22 C 0.139 3.861
23 C -0.120 4.120
24 C 0.052 3.948
25 H 0.071 0.929
26 H 0.063 0.937
27 H 0.070 0.930
28 H 0.193 0.807
29 H 0.172 0.828
30 H 0.142 0.858
31 H 0.420 0.580
32 H 0.047 0.953
33 H 0.068 0.932
34 H 0.040 0.960
35 H -0.017 1.017
36 H 0.055 0.945
37 H 0.249 0.751
38 H 0.006 0.994
39 H 0.070 0.930
40 H 0.091 0.909
41 H 0.081 0.919
42 H 0.212 0.788
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.432 -3.842 20.863 25.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.268 4.268
3 C -0.159 4.159
4 N -0.142 5.142
5 N -0.155 5.155
6 C -0.005 4.005
7 C 0.276 3.724
8 O -0.449 6.449
9 N -0.358 5.358
10 C 0.059 3.941
11 C -0.168 4.168
12 C 0.056 3.944
13 N -0.333 5.333
14 C -0.391 4.391
15 H 0.094 0.906
16 C -0.251 4.251
17 N -0.586 5.586
18 Si 0.799 3.201
19 H -0.212 1.212
20 H -0.226 1.226
21 H -0.187 1.187
22 C 0.013 3.987
23 C -0.159 4.159
24 C -0.093 4.093
25 H 0.089 0.911
26 H 0.082 0.918
27 H 0.089 0.911
28 H 0.210 0.790
29 H 0.189 0.811
30 H 0.159 0.841
31 H 0.258 0.742
32 H 0.066 0.934
33 H 0.086 0.914
34 H 0.059 0.941
35 H 0.001 0.999
36 H 0.073 0.927
37 H 0.058 0.942
38 H 0.024 0.976
39 H 0.088 0.912
40 H 0.110 0.890
41 H 0.100 0.900
42 H 0.228 0.772
Dipole moment (debyes) X Y Z Total
from point charges -12.314 -2.933 20.190 23.830
hybrid contribution -0.263 -0.506 -1.163 1.295
sum -12.576 -3.439 19.027 23.066
Atomic orbital electron populations
1.20065 0.87324 1.02761 1.02253 1.20568 0.98562 0.91508 1.16161
1.24254 0.90047 1.01242 1.00361 1.77401 1.22448 0.90320 1.24052
1.48183 1.05794 1.04250 1.57297 1.21815 0.84461 0.96004 0.98256
1.21346 0.82486 0.81755 0.86807 1.90800 1.73225 1.32345 1.48544
1.45897 1.20653 1.39118 1.30122 1.20604 0.90365 0.97910 0.85257
1.22268 0.97911 1.00358 0.96219 1.20449 0.83372 0.95683 0.94905
1.44361 1.06615 1.58577 1.23699 1.19602 1.10849 1.20065 0.88584
0.90628 1.25917 1.00995 1.00320 0.97893 1.70228 1.43198 1.35046
1.10172 0.85194 0.78511 0.78874 0.77525 1.21225 1.22565 1.18665
1.21061 0.96833 0.94772 0.86008 1.22124 0.92236 1.02700 0.98829
1.22991 0.82976 1.01767 1.01527 0.91073 0.91803 0.91139 0.79000
0.81097 0.84073 0.74225 0.93421 0.91378 0.94115 0.99932 0.92681
0.94200 0.97562 0.91193 0.89033 0.90003 0.77154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.86 10.37 71.24 0.74 -0.12 16
2 C -0.26 -5.14 6.10 -20.15 -0.12 -5.26 16
3 C 0.03 0.68 11.96 85.23 1.02 1.70 16
4 N -0.32 -9.80 11.66 -57.03 -0.66 -10.46 16
5 N -0.37 -8.64 3.39 -351.80 -1.19 -9.84 16
6 C 0.12 1.88 6.99 85.63 0.60 2.48 16
7 C 0.49 13.21 7.82 87.66 0.69 13.89 16
8 O -0.57 -23.04 15.38 -3.04 -0.05 -23.09 16
9 N -0.70 -16.44 5.08 -442.41 -2.25 -18.69 16
10 C 0.16 5.45 2.42 45.02 0.11 5.56 16
11 C -0.13 -5.07 5.65 30.67 0.17 -4.90 16
12 C 0.18 9.34 5.31 86.36 0.46 9.80 16
13 N -0.61 -30.75 2.99 -699.10 -2.09 -32.84 16
14 C -0.26 -14.24 9.58 84.03 0.81 -13.43 16
15 H 0.08 3.92 7.89 -2.91 -0.02 3.89 16
16 C -0.06 -3.17 4.90 84.86 0.42 -2.76 16
17 N -0.94 -57.45 11.22 21.65 0.24 -57.20 16
18 Si 0.97 44.88 29.59 68.60 2.03 46.91 16
19 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16
20 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16
21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16
22 C 0.14 5.60 6.51 86.36 0.56 6.16 16
23 C -0.12 -3.54 5.55 30.67 0.17 -3.37 16
24 C 0.05 0.94 11.36 83.54 0.95 1.89 16
25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16
26 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16
27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16
28 H 0.19 3.79 8.06 -2.91 -0.02 3.77 16
29 H 0.17 1.00 8.07 -2.39 -0.02 0.98 16
30 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16
31 H 0.42 5.78 8.60 -92.71 -0.80 4.99 16
32 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16
33 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16
34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16
35 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16
36 H 0.05 3.17 6.06 -2.39 -0.01 3.15 16
37 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16
38 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16
39 H 0.07 2.64 7.94 -2.38 -0.02 2.62 16
40 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16
41 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16
42 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16
Total: -1.00 -84.11 347.14 2.81 -81.31
By element:
Atomic # 1 Polarization: 12.05 SS G_CDS: 0.22 Total: 12.27 kcal
Atomic # 6 Polarization: 5.07 SS G_CDS: 6.56 Total: 11.63 kcal
Atomic # 7 Polarization: -123.08 SS G_CDS: -5.95 Total: -129.03 kcal
Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.09 kcal
Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal
Total: -84.11 2.81 -81.31 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609329766.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.562 kcal
(2) G-P(sol) polarization free energy of solvation -84.114 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.447 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.305 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.256 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds