Wall clock time and date at job start Tue Mar 31 2020 03:18:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09003 * 109.47315 * 2 1
4 4 O 1.42904 * 109.46775 * 119.99683 * 2 1 3
5 5 C 1.52997 * 109.47127 * 239.99587 * 2 1 3
6 6 N 1.46903 * 109.47248 * 172.09772 * 5 2 1
7 7 C 1.46905 * 111.00017 * 308.89394 * 6 5 2
8 8 C 1.50699 * 109.46901 * 295.21943 * 7 6 5
9 9 O 1.21297 * 119.99863 * 355.77844 * 8 7 6
10 10 N 1.34775 * 120.00173 * 175.78006 * 8 7 6
11 11 C 1.37100 * 119.99803 * 179.97438 * 10 8 7
12 12 H 1.07994 * 120.00152 * 0.02562 * 11 10 8
13 13 C 1.38948 * 119.99673 * 179.97438 * 11 10 8
14 14 N 1.31417 * 119.99818 * 0.02562 * 13 11 10
15 15 Si 1.86803 * 120.00021 * 179.97438 * 13 11 10
16 16 H 1.48506 * 109.46933 * 90.00074 * 15 13 11
17 17 H 1.48497 * 109.47057 * 209.99915 * 15 13 11
18 18 H 1.48497 * 109.47196 * 330.00106 * 15 13 11
19 19 C 1.46906 * 110.99533 * 72.84150 * 6 5 2
20 20 C 1.50694 * 109.46952 * 72.55280 * 19 6 5
21 21 C 1.38235 * 119.99899 * 274.27038 * 20 19 6
22 22 C 1.38236 * 120.00343 * 179.76806 * 21 20 19
23 23 C 1.38236 * 119.99727 * 0.50488 * 22 21 20
24 24 C 1.38241 * 119.99854 * 359.74773 * 23 22 21
25 25 C 1.38233 * 120.00084 * 359.97438 * 24 23 22
26 26 H 1.08992 * 109.47739 * 180.02562 * 1 2 3
27 27 H 1.09004 * 109.47480 * 300.00828 * 1 2 3
28 28 H 1.09007 * 109.47024 * 59.99893 * 1 2 3
29 29 H 0.96702 * 113.99557 * 51.83728 * 4 2 1
30 30 H 1.08999 * 109.47235 * 52.10075 * 5 2 1
31 31 H 1.08994 * 109.47606 * 292.09839 * 5 2 1
32 32 H 1.08999 * 109.47036 * 55.21549 * 7 6 5
33 33 H 1.09000 * 109.46837 * 175.22108 * 7 6 5
34 34 H 0.96996 * 119.99814 * 359.97438 * 10 8 7
35 35 H 0.97004 * 119.99700 * 180.02562 * 14 13 11
36 36 H 1.09005 * 109.46746 * 192.54444 * 19 6 5
37 37 H 1.08990 * 109.47457 * 312.54376 * 19 6 5
38 38 H 1.08005 * 119.99951 * 359.97438 * 21 20 19
39 39 H 1.07996 * 120.00423 * 180.22580 * 22 21 20
40 40 H 1.07999 * 120.00244 * 179.72329 * 23 22 21
41 41 H 1.07998 * 119.99810 * 179.97438 * 24 23 22
42 42 H 1.07992 * 119.99955 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0062 -0.6736 1.1669
5 6 2.0399 -0.7213 -1.2492
6 7 3.4966 -0.5586 -1.3482
7 6 3.8777 0.8552 -1.2296
8 6 3.3236 1.6247 -2.4008
9 8 2.7410 1.0400 -3.2896
10 7 3.4755 2.9625 -2.4608
11 6 2.9719 3.6625 -3.5267
12 1 2.4531 3.1419 -4.3180
13 6 3.1281 5.0418 -3.5882
14 7 3.7589 5.6752 -2.6250
15 14 2.4425 5.9955 -5.0408
16 1 1.0495 6.4158 -4.7439
17 1 3.2808 7.1968 -5.2842
18 1 2.4523 5.1321 -6.2489
19 6 4.1871 -1.3762 -0.3418
20 6 4.1033 -2.8294 -0.7317
21 6 2.9999 -3.5795 -0.3703
22 6 2.9207 -4.9113 -0.7320
23 6 3.9498 -5.4958 -1.4463
24 6 5.0558 -4.7471 -1.8032
25 6 5.1323 -3.4138 -1.4464
26 1 -0.3634 -1.0275 0.0005
27 1 -0.3634 0.5140 0.8899
28 1 -0.3633 0.5139 -0.8900
29 1 1.6226 -1.5515 1.2983
30 1 1.5659 -0.2956 -2.1336
31 1 1.7966 -1.7816 -1.1814
32 1 3.4744 1.2636 -0.3030
33 1 4.9644 0.9390 -1.2211
34 1 3.9412 3.4301 -1.7499
35 1 3.8676 6.6382 -2.6678
36 1 5.2332 -1.0751 -0.2848
37 1 3.7143 -1.2327 0.6296
38 1 2.1980 -3.1241 0.1919
39 1 2.0569 -5.4964 -0.4528
40 1 3.8901 -6.5375 -1.7251
41 1 5.8600 -5.2039 -2.3609
42 1 5.9964 -2.8290 -1.7249
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000610161395.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:58
Heat of formation + Delta-G solvation = -49.169971 kcal
Electronic energy + Delta-G solvation = -23820.508807 eV
Core-core repulsion = 20379.794765 eV
Total energy + Delta-G solvation = -3440.714042 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.157 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-39.87894 -38.62593 -37.54448 -35.38170 -33.83234 -31.94738 -31.25763 -30.87823
-30.70138 -27.60726 -26.51397 -24.68427 -23.08654 -22.54569 -21.55944 -20.52522
-19.05091 -17.82644 -16.75779 -16.48242 -16.19649 -15.89897 -15.31434 -15.16590
-14.59428 -14.48952 -14.44656 -13.92662 -13.70388 -13.47571 -13.33999 -12.89929
-12.45814 -12.36507 -12.19934 -11.83156 -11.74975 -11.52790 -11.40356 -11.19598
-10.99907 -10.87334 -10.77942 -10.63415 -10.38279 -10.25512 -10.19960 -9.46117
-8.85474 -8.70781 -8.34510 -7.94581 -7.54010 -6.40174 -3.80926 1.40661
1.45675 3.18237 3.26980 3.32940 3.74747 3.92669 4.16148 4.28420
4.44841 4.88417 4.91818 4.96596 5.04347 5.06669 5.14796 5.21347
5.27699 5.30028 5.48006 5.56446 5.59431 5.73130 5.80998 5.83096
5.93301 6.04063 6.09293 6.13913 6.19216 6.28597 6.35002 6.45833
6.51214 6.54256 6.74704 7.05582 7.32077 7.46701 7.56566 7.61501
8.08413 8.64077 9.20030 9.56725 10.08936 10.77572
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.021592 B = 0.003821 C = 0.003536
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.457759 B = 7326.409667 C = 7916.523371
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.056 3.944
3 H 0.106 0.894
4 O -0.559 6.559
5 C 0.019 3.981
6 N -0.500 5.500
7 C 0.038 3.962
8 C 0.444 3.556
9 O -0.577 6.577
10 N -0.565 5.565
11 C -0.298 4.298
12 H 0.103 0.897
13 C 0.022 3.978
14 N -0.902 5.902
15 Si 0.929 3.071
16 H -0.279 1.279
17 H -0.284 1.284
18 H -0.270 1.270
19 C 0.062 3.938
20 C -0.058 4.058
21 C -0.115 4.115
22 C -0.124 4.124
23 C -0.129 4.129
24 C -0.121 4.121
25 C -0.103 4.103
26 H 0.055 0.945
27 H 0.060 0.940
28 H 0.071 0.929
29 H 0.366 0.634
30 H 0.109 0.891
31 H 0.074 0.926
32 H 0.055 0.945
33 H 0.087 0.913
34 H 0.392 0.608
35 H 0.271 0.729
36 H 0.072 0.928
37 H 0.086 0.914
38 H 0.115 0.885
39 H 0.117 0.883
40 H 0.116 0.884
41 H 0.118 0.882
42 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.947 -16.502 8.316 18.504
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.003 4.003
3 H 0.124 0.876
4 O -0.366 6.366
5 C -0.109 4.109
6 N -0.222 5.222
7 C -0.093 4.093
8 C 0.229 3.771
9 O -0.461 6.461
10 N -0.202 5.202
11 C -0.428 4.428
12 H 0.120 0.880
13 C -0.179 4.179
14 N -0.543 5.543
15 Si 0.756 3.244
16 H -0.205 1.205
17 H -0.209 1.209
18 H -0.194 1.194
19 C -0.065 4.065
20 C -0.059 4.059
21 C -0.134 4.134
22 C -0.142 4.142
23 C -0.147 4.147
24 C -0.139 4.139
25 C -0.121 4.121
26 H 0.074 0.926
27 H 0.079 0.921
28 H 0.090 0.910
29 H 0.214 0.786
30 H 0.127 0.873
31 H 0.092 0.908
32 H 0.072 0.928
33 H 0.105 0.895
34 H 0.225 0.775
35 H 0.081 0.919
36 H 0.091 0.909
37 H 0.103 0.897
38 H 0.133 0.867
39 H 0.135 0.865
40 H 0.134 0.866
41 H 0.136 0.864
42 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -0.785 -16.282 7.310 17.865
hybrid contribution -0.585 0.694 0.328 0.965
sum -1.370 -15.588 7.639 17.413
Atomic orbital electron populations
1.22413 0.96221 1.02096 1.03110 1.22906 0.93717 0.98225 0.85502
0.87593 1.86560 1.69343 1.34184 1.46473 1.23096 0.88724 1.00700
0.98382 1.61862 1.06302 1.06423 1.47612 1.22000 1.01181 0.88623
0.97493 1.19766 0.85729 0.82815 0.88768 1.90486 1.46377 1.68585
1.40639 1.41876 1.50748 1.05124 1.22453 1.19686 1.32959 0.89395
1.00727 0.87957 1.25248 0.97351 0.96839 0.98494 1.69618 1.42130
1.09792 1.32799 0.85878 0.78521 0.78849 0.81164 1.20473 1.20947
1.19423 1.21559 0.99827 0.89039 0.96057 1.19841 0.93996 0.95356
0.96662 1.21000 0.97562 0.94013 1.00816 1.21072 0.98710 0.95156
0.99231 1.21069 0.94475 0.99675 0.99505 1.21130 0.98215 0.94451
1.00139 1.21085 0.99000 0.94709 0.97342 0.92587 0.92121 0.90966
0.78649 0.87293 0.90809 0.92755 0.89454 0.77529 0.91909 0.90919
0.89656 0.86732 0.86487 0.86575 0.86390 0.86118
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.19 9.46 37.15 0.35 -1.84 16
2 C 0.06 0.78 3.21 -26.74 -0.09 0.70 16
3 H 0.11 1.74 5.74 -51.93 -0.30 1.44 16
4 O -0.56 -6.82 10.31 -35.23 -0.36 -7.19 16
5 C 0.02 0.30 4.64 -3.82 -0.02 0.29 16
6 N -0.50 -8.40 4.39 -237.52 -1.04 -9.44 16
7 C 0.04 0.69 4.97 -4.97 -0.02 0.67 16
8 C 0.44 10.39 7.48 -10.99 -0.08 10.31 16
9 O -0.58 -15.37 13.99 5.54 0.08 -15.29 16
10 N -0.57 -14.25 5.29 -10.96 -0.06 -14.30 16
11 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16
12 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16
13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
14 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16
15 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16
16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
19 C 0.06 0.86 5.02 -4.98 -0.02 0.83 16
20 C -0.06 -0.76 5.18 -104.63 -0.54 -1.30 16
21 C -0.12 -1.33 8.09 -39.58 -0.32 -1.65 16
22 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16
23 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16
24 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16
25 C -0.10 -1.31 9.68 -39.58 -0.38 -1.70 16
26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
29 H 0.37 3.20 7.51 45.56 0.34 3.54 16
30 H 0.11 2.12 6.12 -51.93 -0.32 1.80 16
31 H 0.07 1.04 5.14 -51.93 -0.27 0.77 16
32 H 0.05 0.93 5.73 -51.93 -0.30 0.63 16
33 H 0.09 1.48 7.89 -51.93 -0.41 1.07 16
34 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16
35 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16
36 H 0.07 0.97 7.73 -51.93 -0.40 0.56 16
37 H 0.09 1.13 4.81 -51.93 -0.25 0.88 16
38 H 0.11 1.11 5.82 -52.48 -0.31 0.80 16
39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16
40 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16
41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16
42 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16
LS Contribution 337.45 15.07 5.09 5.09
Total: -1.00 -31.39 337.45 -8.16 -39.55
By element:
Atomic # 1 Polarization: 21.24 SS G_CDS: -5.00 Total: 16.24 kcal
Atomic # 6 Polarization: -4.29 SS G_CDS: -2.56 Total: -6.85 kcal
Atomic # 7 Polarization: -47.20 SS G_CDS: -0.38 Total: -47.58 kcal
Atomic # 8 Polarization: -22.19 SS G_CDS: -0.29 Total: -22.48 kcal
Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -31.39 -8.16 -39.55 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610161395.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.623 kcal
(2) G-P(sol) polarization free energy of solvation -31.388 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.011 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.170 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds