Wall clock time and date at job start Tue Mar 31 2020 03:18:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09003 * 109.47315 * 2 1
4 4 O 1.42904 * 109.46775 * 119.99683 * 2 1 3
5 5 C 1.52997 * 109.47127 * 239.99587 * 2 1 3
6 6 N 1.46903 * 109.47248 * 172.09772 * 5 2 1
7 7 C 1.46905 * 111.00017 * 308.89394 * 6 5 2
8 8 C 1.50699 * 109.46901 * 295.21943 * 7 6 5
9 9 O 1.21297 * 119.99863 * 355.77844 * 8 7 6
10 10 N 1.34775 * 120.00173 * 175.78006 * 8 7 6
11 11 C 1.37100 * 119.99803 * 179.97438 * 10 8 7
12 12 H 1.07994 * 120.00152 * 0.02562 * 11 10 8
13 13 C 1.38948 * 119.99673 * 179.97438 * 11 10 8
14 14 N 1.31417 * 119.99818 * 0.02562 * 13 11 10
15 15 Si 1.86803 * 120.00021 * 179.97438 * 13 11 10
16 16 H 1.48506 * 109.46933 * 90.00074 * 15 13 11
17 17 H 1.48497 * 109.47057 * 209.99915 * 15 13 11
18 18 H 1.48497 * 109.47196 * 330.00106 * 15 13 11
19 19 C 1.46906 * 110.99533 * 72.84150 * 6 5 2
20 20 C 1.50694 * 109.46952 * 72.55280 * 19 6 5
21 21 C 1.38235 * 119.99899 * 274.27038 * 20 19 6
22 22 C 1.38236 * 120.00343 * 179.76806 * 21 20 19
23 23 C 1.38236 * 119.99727 * 0.50488 * 22 21 20
24 24 C 1.38241 * 119.99854 * 359.74773 * 23 22 21
25 25 C 1.38233 * 120.00084 * 359.97438 * 24 23 22
26 26 H 1.08992 * 109.47739 * 180.02562 * 1 2 3
27 27 H 1.09004 * 109.47480 * 300.00828 * 1 2 3
28 28 H 1.09007 * 109.47024 * 59.99893 * 1 2 3
29 29 H 0.96702 * 113.99557 * 51.83728 * 4 2 1
30 30 H 1.08999 * 109.47235 * 52.10075 * 5 2 1
31 31 H 1.08994 * 109.47606 * 292.09839 * 5 2 1
32 32 H 1.08999 * 109.47036 * 55.21549 * 7 6 5
33 33 H 1.09000 * 109.46837 * 175.22108 * 7 6 5
34 34 H 0.96996 * 119.99814 * 359.97438 * 10 8 7
35 35 H 0.97004 * 119.99700 * 180.02562 * 14 13 11
36 36 H 1.09005 * 109.46746 * 192.54444 * 19 6 5
37 37 H 1.08990 * 109.47457 * 312.54376 * 19 6 5
38 38 H 1.08005 * 119.99951 * 359.97438 * 21 20 19
39 39 H 1.07996 * 120.00423 * 180.22580 * 22 21 20
40 40 H 1.07999 * 120.00244 * 179.72329 * 23 22 21
41 41 H 1.07998 * 119.99810 * 179.97438 * 24 23 22
42 42 H 1.07992 * 119.99955 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0062 -0.6736 1.1669
5 6 2.0399 -0.7213 -1.2492
6 7 3.4966 -0.5586 -1.3482
7 6 3.8777 0.8552 -1.2296
8 6 3.3236 1.6247 -2.4008
9 8 2.7410 1.0400 -3.2896
10 7 3.4755 2.9625 -2.4608
11 6 2.9719 3.6625 -3.5267
12 1 2.4531 3.1419 -4.3180
13 6 3.1281 5.0418 -3.5882
14 7 3.7589 5.6752 -2.6250
15 14 2.4425 5.9955 -5.0408
16 1 1.0495 6.4158 -4.7439
17 1 3.2808 7.1968 -5.2842
18 1 2.4523 5.1321 -6.2489
19 6 4.1871 -1.3762 -0.3418
20 6 4.1033 -2.8294 -0.7317
21 6 2.9999 -3.5795 -0.3703
22 6 2.9207 -4.9113 -0.7320
23 6 3.9498 -5.4958 -1.4463
24 6 5.0558 -4.7471 -1.8032
25 6 5.1323 -3.4138 -1.4464
26 1 -0.3634 -1.0275 0.0005
27 1 -0.3634 0.5140 0.8899
28 1 -0.3633 0.5139 -0.8900
29 1 1.6226 -1.5515 1.2983
30 1 1.5659 -0.2956 -2.1336
31 1 1.7966 -1.7816 -1.1814
32 1 3.4744 1.2636 -0.3030
33 1 4.9644 0.9390 -1.2211
34 1 3.9412 3.4301 -1.7499
35 1 3.8676 6.6382 -2.6678
36 1 5.2332 -1.0751 -0.2848
37 1 3.7143 -1.2327 0.6296
38 1 2.1980 -3.1241 0.1919
39 1 2.0569 -5.4964 -0.4528
40 1 3.8901 -6.5375 -1.7251
41 1 5.8600 -5.2039 -2.3609
42 1 5.9964 -2.8290 -1.7249
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000610161395.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:57
Heat of formation + Delta-G solvation = -71.860151 kcal
Electronic energy + Delta-G solvation = -23821.492727 eV
Core-core repulsion = 20379.794765 eV
Total energy + Delta-G solvation = -3441.697962 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.157 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.09767 -39.90973 -38.95599 -36.63553 -35.80348 -33.28033 -32.95130 -31.84751
-31.69757 -29.11185 -27.59293 -26.53841 -24.28729 -23.44195 -22.67749 -21.63185
-20.83292 -19.82228 -17.94161 -17.59617 -17.41972 -17.30009 -16.59488 -16.36873
-16.16248 -15.79003 -15.60687 -15.41039 -15.23499 -14.95260 -14.24498 -14.16676
-13.71292 -13.49988 -13.36950 -13.31136 -12.99571 -12.85965 -12.81260 -12.70478
-12.41586 -12.29305 -12.12424 -11.87595 -11.80711 -11.70235 -11.45935 -11.33451
-10.24006 -9.99008 -9.71108 -9.61085 -8.81935 -8.45420 -5.94081 0.52125
0.59501 1.37675 1.41335 1.54156 2.06231 2.28813 2.72438 3.15698
3.20399 3.28687 3.52343 3.80202 3.96848 4.03419 4.07356 4.18097
4.25652 4.29524 4.34356 4.48117 4.49857 4.54867 4.61058 4.73393
4.81889 4.83927 5.02538 5.09559 5.13736 5.20068 5.24433 5.26539
5.41863 5.63221 5.69799 5.81593 5.91837 6.10836 6.20636 6.27282
6.62066 6.76318 7.14265 7.57687 8.13749 8.71996
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.021592 B = 0.003821 C = 0.003536
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.457759 B = 7326.409667 C = 7916.523371
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.069 3.931
3 H 0.078 0.922
4 O -0.559 6.559
5 C 0.026 3.974
6 N -0.519 5.519
7 C 0.051 3.949
8 C 0.445 3.555
9 O -0.612 6.612
10 N -0.575 5.575
11 C -0.330 4.330
12 H 0.079 0.921
13 C -0.013 4.013
14 N -0.922 5.922
15 Si 0.992 3.008
16 H -0.270 1.270
17 H -0.271 1.271
18 H -0.273 1.273
19 C 0.069 3.931
20 C -0.078 4.078
21 C -0.122 4.122
22 C -0.127 4.127
23 C -0.132 4.132
24 C -0.131 4.131
25 C -0.124 4.124
26 H 0.082 0.918
27 H 0.068 0.932
28 H 0.052 0.948
29 H 0.385 0.615
30 H 0.067 0.933
31 H 0.093 0.907
32 H 0.069 0.931
33 H 0.102 0.898
34 H 0.394 0.606
35 H 0.277 0.723
36 H 0.073 0.927
37 H 0.095 0.905
38 H 0.133 0.867
39 H 0.144 0.856
40 H 0.141 0.859
41 H 0.134 0.866
42 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.469 -17.880 9.266 20.192
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.009 3.991
3 H 0.096 0.904
4 O -0.367 6.367
5 C -0.102 4.102
6 N -0.241 5.241
7 C -0.080 4.080
8 C 0.232 3.768
9 O -0.497 6.497
10 N -0.212 5.212
11 C -0.460 4.460
12 H 0.097 0.903
13 C -0.213 4.213
14 N -0.563 5.563
15 Si 0.815 3.185
16 H -0.196 1.196
17 H -0.196 1.196
18 H -0.198 1.198
19 C -0.057 4.057
20 C -0.079 4.079
21 C -0.141 4.141
22 C -0.145 4.145
23 C -0.150 4.150
24 C -0.149 4.149
25 C -0.143 4.143
26 H 0.101 0.899
27 H 0.087 0.913
28 H 0.071 0.929
29 H 0.235 0.765
30 H 0.085 0.915
31 H 0.111 0.889
32 H 0.087 0.913
33 H 0.120 0.880
34 H 0.228 0.772
35 H 0.086 0.914
36 H 0.092 0.908
37 H 0.112 0.888
38 H 0.150 0.850
39 H 0.161 0.839
40 H 0.159 0.841
41 H 0.152 0.848
42 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -1.299 -17.678 8.292 19.570
hybrid contribution -0.408 0.983 0.057 1.066
sum -1.707 -16.695 8.348 18.744
Atomic orbital electron populations
1.22364 0.94751 1.03711 1.02533 1.22530 0.94707 0.96613 0.85249
0.90440 1.86526 1.69554 1.35483 1.45152 1.22940 0.88069 1.01657
0.97530 1.61802 1.07192 1.05553 1.49566 1.21835 1.01624 0.89237
0.95290 1.20673 0.84258 0.82364 0.89510 1.90464 1.47616 1.69209
1.42456 1.41934 1.51253 1.05852 1.22179 1.19646 1.34559 0.90318
1.01469 0.90293 1.26020 0.97187 0.97082 1.00971 1.69683 1.42327
1.10309 1.33950 0.84947 0.78283 0.77510 0.77718 1.19584 1.19629
1.19813 1.21542 0.99501 0.89164 0.95478 1.19869 0.95094 0.94950
0.97981 1.21243 0.97438 0.94557 1.00824 1.21443 0.99514 0.95013
0.98493 1.21448 0.93960 1.00872 0.98726 1.21398 0.99224 0.94039
1.00201 1.21239 0.99225 0.95675 0.98145 0.89924 0.91274 0.92911
0.76501 0.91484 0.88886 0.91330 0.88009 0.77208 0.91365 0.90847
0.88781 0.84967 0.83854 0.84129 0.84770 0.86526
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.06 9.46 71.98 0.68 -3.37 16
2 C 0.07 1.88 3.21 30.59 0.10 1.97 16
3 H 0.08 2.57 5.74 -2.39 -0.01 2.55 16
4 O -0.56 -12.34 10.31 -148.98 -1.54 -13.88 16
5 C 0.03 0.83 4.64 86.30 0.40 1.23 16
6 N -0.52 -17.38 4.39 -905.36 -3.97 -21.35 16
7 C 0.05 1.88 4.97 85.56 0.43 2.30 16
8 C 0.44 21.53 7.48 87.66 0.66 22.18 16
9 O -0.61 -33.99 13.99 -3.08 -0.04 -34.03 16
10 N -0.57 -29.94 5.29 -306.99 -1.62 -31.57 16
11 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16
12 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16
13 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16
14 N -0.92 -50.30 13.05 21.66 0.28 -50.02 16
15 Si 0.99 43.33 29.55 68.60 2.03 45.35 16
16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16
17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
19 C 0.07 1.84 5.02 85.55 0.43 2.27 16
20 C -0.08 -1.95 5.18 -19.87 -0.10 -2.06 16
21 C -0.12 -2.53 8.09 22.27 0.18 -2.35 16
22 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16
23 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16
24 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16
25 C -0.12 -3.09 9.68 22.27 0.22 -2.87 16
26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
27 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16
28 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16
29 H 0.38 5.41 7.51 -74.06 -0.56 4.86 16
30 H 0.07 2.71 6.12 -2.39 -0.01 2.69 16
31 H 0.09 2.50 5.14 -2.39 -0.01 2.48 16
32 H 0.07 2.35 5.73 -2.39 -0.01 2.33 16
33 H 0.10 3.42 7.89 -2.39 -0.02 3.41 16
34 H 0.39 19.72 7.90 -92.71 -0.73 18.99 16
35 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16
36 H 0.07 1.90 7.73 -2.38 -0.02 1.88 16
37 H 0.09 2.32 4.81 -2.39 -0.01 2.31 16
38 H 0.13 2.13 5.82 -2.91 -0.02 2.11 16
39 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16
40 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16
41 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16
42 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16
Total: -1.00 -69.01 337.45 -0.16 -69.17
By element:
Atomic # 1 Polarization: 42.43 SS G_CDS: -0.23 Total: 42.20 kcal
Atomic # 6 Polarization: -10.82 SS G_CDS: 4.93 Total: -5.88 kcal
Atomic # 7 Polarization: -97.62 SS G_CDS: -5.31 Total: -102.94 kcal
Atomic # 8 Polarization: -46.33 SS G_CDS: -1.58 Total: -47.91 kcal
Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal
Total: -69.01 -0.16 -69.17 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610161395.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.694 kcal
(2) G-P(sol) polarization free energy of solvation -69.007 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.702 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.166 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.860 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds