Wall clock time and date at job start Tue Mar 31 2020 03:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34901 * 117.00064 * 2 1 4 4 N 1.31295 * 119.38527 * 359.97438 * 3 2 1 5 5 C 1.33495 * 121.93069 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.74207 * 179.97438 * 5 4 3 7 7 C 1.35825 * 120.52019 * 359.97438 * 5 4 3 8 8 C 1.41730 * 118.76027 * 0.27709 * 7 5 4 9 9 N 1.31538 * 120.87087 * 179.70402 * 8 7 5 10 10 C 1.46503 * 119.99668 * 173.91375 * 9 8 7 11 11 C 1.53036 * 109.46017 * 245.37208 * 10 9 8 12 12 C 1.53194 * 109.31505 * 178.61842 * 11 10 9 13 13 N 1.46919 * 108.77653 * 54.63167 * 12 11 10 14 14 C 1.36941 * 120.62950 * 126.37430 * 13 12 11 15 15 H 1.08000 * 119.99634 * 329.05111 * 14 13 12 16 16 C 1.38812 * 120.00253 * 149.05669 * 14 13 12 17 17 N 1.31622 * 119.99551 * 348.79139 * 16 14 13 18 18 Si 1.86801 * 120.00148 * 168.79644 * 16 14 13 19 19 H 1.48496 * 109.47119 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47017 * 119.99931 * 18 16 14 21 21 H 1.48495 * 109.47008 * 239.99697 * 18 16 14 22 22 C 1.46930 * 118.74010 * 306.39406 * 13 12 11 23 23 C 1.53047 * 109.46195 * 125.30528 * 10 9 8 24 24 N 1.36136 * 119.38646 * 179.97438 * 3 2 1 25 25 H 0.97001 * 120.34637 * 0.02562 * 24 3 2 26 26 H 1.08996 * 109.47593 * 299.99920 * 1 2 3 27 27 H 1.08997 * 109.47485 * 60.00186 * 1 2 3 28 28 H 1.09003 * 109.47317 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47324 * 270.02292 * 6 5 4 30 30 H 1.09006 * 109.46843 * 30.02073 * 6 5 4 31 31 H 1.09001 * 109.47270 * 150.01874 * 6 5 4 32 32 H 1.08000 * 120.61491 * 180.02562 * 7 5 4 33 33 H 1.09001 * 109.46061 * 5.33571 * 10 9 8 34 34 H 1.09003 * 109.50033 * 298.56865 * 11 10 9 35 35 H 1.09000 * 109.49931 * 58.66195 * 11 10 9 36 36 H 1.09011 * 109.58109 * 294.84821 * 12 11 10 37 37 H 1.09001 * 109.70661 * 174.49465 * 12 11 10 38 38 H 0.97002 * 119.99423 * 179.97438 * 17 16 14 39 39 H 1.08991 * 109.58626 * 293.81991 * 22 13 12 40 40 H 1.09002 * 109.70142 * 173.46387 * 22 13 12 41 41 H 1.08996 * 109.49420 * 301.33904 * 23 10 9 42 42 H 1.09001 * 109.49459 * 61.42934 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 7 1.3375 2.2954 -0.0005 5 6 1.8902 3.5106 -0.0010 6 6 1.0086 4.7328 -0.0022 7 6 3.2408 3.6541 -0.0006 8 6 4.0502 2.4906 -0.0055 9 7 5.3624 2.5813 -0.0110 10 6 6.1807 1.3731 0.1185 11 6 6.9603 1.4239 1.4344 12 6 7.7881 0.1434 1.5827 13 7 8.6293 -0.0168 0.3889 14 6 9.9828 -0.1884 0.5069 15 1 10.5143 0.2627 1.3318 16 6 10.6716 -0.9419 -0.4336 17 7 10.0086 -1.6702 -1.3068 18 14 12.5393 -0.9226 -0.4598 19 1 13.0402 -0.0309 0.6168 20 1 13.0517 -2.2991 -0.2417 21 1 13.0106 -0.4218 -1.7760 22 6 7.9908 0.0109 -0.9341 23 6 7.1608 1.2929 -1.0542 24 7 3.4246 1.2586 0.0005 25 1 3.9491 0.4427 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7961 5.0266 -1.0302 30 1 0.0741 4.5072 0.5117 31 1 1.5177 5.5485 0.5110 32 1 3.6895 4.6364 -0.0006 33 1 5.5351 0.4949 0.1128 34 1 7.6246 2.2881 1.4307 35 1 6.2624 1.5046 2.2678 36 1 7.1214 -0.7137 1.6777 37 1 8.4200 0.2147 2.4681 38 1 10.4899 -2.1965 -1.9643 39 1 7.3407 -0.8569 -1.0444 40 1 8.7549 -0.0038 -1.7113 41 1 6.6056 1.2803 -1.9921 42 1 7.8232 2.1583 -1.0346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612783760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:02 Heat of formation + Delta-G solvation = 29.619225 kcal Electronic energy + Delta-G solvation = -23445.521643 eV Core-core repulsion = 20040.516909 eV Total energy + Delta-G solvation = -3405.004734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30517 -39.80535 -39.08995 -37.01440 -35.22654 -34.04134 -32.41799 -31.62879 -30.95996 -29.07143 -28.45864 -26.73005 -24.44252 -24.00881 -23.82227 -22.17359 -20.92689 -20.00592 -19.04590 -18.68669 -18.47637 -17.54947 -16.92293 -16.33825 -15.80935 -15.63884 -15.44820 -15.36287 -15.05244 -14.88366 -14.59825 -14.21758 -13.96222 -13.54650 -13.23596 -13.05445 -13.00928 -12.87590 -12.81381 -12.78810 -12.64836 -12.21911 -12.03426 -11.92401 -11.80358 -11.51660 -11.38300 -11.03383 -10.79758 -10.59120 -10.45234 -8.69724 -8.50555 -7.90246 -5.41421 -0.12769 0.82637 0.86171 1.44738 1.46063 1.57288 2.48290 2.53247 2.56431 3.11451 3.16989 3.29460 3.61137 3.82619 4.07660 4.11840 4.26639 4.31015 4.42710 4.44329 4.45696 4.58837 4.60760 4.71877 4.77256 4.82888 4.89214 4.90659 4.94127 5.00405 5.03714 5.12409 5.18016 5.29288 5.41341 5.44754 5.59972 5.65916 5.74938 6.08692 6.37524 6.81786 7.03931 7.11437 7.79723 8.33796 9.16246 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028688 B = 0.003328 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.776988 B = 8410.393063 C = 8904.490893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.324 6.324 3 C 0.574 3.426 4 N -0.601 5.601 5 C 0.190 3.810 6 C -0.096 4.096 7 C -0.263 4.263 8 C 0.413 3.587 9 N -0.605 5.605 10 C 0.101 3.899 11 C -0.104 4.104 12 C 0.145 3.855 13 N -0.610 5.610 14 C -0.266 4.266 15 H 0.065 0.935 16 C -0.050 4.050 17 N -0.936 5.936 18 Si 0.972 3.028 19 H -0.267 1.267 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.183 3.817 23 C -0.110 4.110 24 N -0.650 5.650 25 H 0.418 0.582 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.160 0.840 33 H 0.030 0.970 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.059 0.941 38 H 0.251 0.749 39 H -0.001 1.001 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.840 8.360 2.846 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.224 6.224 3 C 0.272 3.728 4 N -0.344 5.344 5 C 0.070 3.930 6 C -0.153 4.153 7 C -0.289 4.289 8 C 0.148 3.852 9 N -0.333 5.333 10 C -0.010 4.010 11 C -0.144 4.144 12 C 0.019 3.981 13 N -0.334 5.334 14 C -0.396 4.396 15 H 0.083 0.917 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.800 3.200 19 H -0.191 1.191 20 H -0.215 1.215 21 H -0.216 1.216 22 C 0.057 3.943 23 C -0.150 4.150 24 N -0.289 5.289 25 H 0.259 0.741 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.149 0.851 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.177 0.823 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.017 0.983 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -23.783 8.661 2.698 25.454 hybrid contribution 1.856 -1.511 -0.285 2.410 sum -21.927 7.150 2.412 23.189 Atomic orbital electron populations 1.23741 0.70764 1.05728 1.04158 1.86331 1.27550 1.22481 1.86077 1.20618 0.80575 0.87272 0.84361 1.68070 1.35547 0.97120 1.33712 1.21001 0.91902 0.92374 0.87749 1.20800 0.98701 0.91315 1.04461 1.21203 0.92637 0.97119 1.17964 1.20742 0.89906 0.83116 0.91399 1.73446 1.00329 1.28101 1.31452 1.21096 0.93582 0.90259 0.96079 1.21873 0.98101 0.98808 0.95601 1.21040 0.92843 0.94228 0.89994 1.44269 1.03563 1.84621 1.00954 1.19559 0.84017 1.24846 1.11176 0.91692 1.25941 1.02654 0.96322 0.99573 1.70149 1.35549 1.30981 1.21523 0.85130 0.80077 0.77251 0.77535 1.19086 1.21500 1.21594 1.20549 0.93927 0.91613 0.88237 1.21976 0.97260 0.99316 0.96440 1.43980 1.05190 1.11890 1.67836 0.74124 0.90501 0.90598 0.85051 0.88682 0.89529 0.88676 0.82251 0.95178 0.92833 0.91638 0.96466 0.92217 0.93996 0.98294 0.92401 0.93066 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 10.47 113.37 1.19 1.70 16 2 O -0.32 -6.20 10.63 -81.69 -0.87 -7.06 16 3 C 0.57 13.17 8.61 179.68 1.55 14.72 16 4 N -0.60 -12.65 9.10 -301.92 -2.75 -15.40 16 5 C 0.19 3.79 6.76 41.75 0.28 4.07 16 6 C -0.10 -1.09 10.17 71.24 0.72 -0.36 16 7 C -0.26 -6.42 9.68 22.57 0.22 -6.20 16 8 C 0.41 12.42 7.50 134.25 1.01 13.42 16 9 N -0.60 -21.72 10.18 -323.36 -3.29 -25.01 16 10 C 0.10 3.88 2.77 45.02 0.12 4.00 16 11 C -0.10 -4.08 5.68 30.67 0.17 -3.91 16 12 C 0.14 6.46 6.52 86.36 0.56 7.02 16 13 N -0.61 -32.65 2.99 -699.10 -2.09 -34.74 16 14 C -0.27 -15.30 9.58 84.03 0.81 -14.50 16 15 H 0.07 3.65 7.85 -2.91 -0.02 3.63 16 16 C -0.05 -2.86 5.04 84.86 0.43 -2.43 16 17 N -0.94 -56.72 11.05 21.65 0.24 -56.49 16 18 Si 0.97 46.13 29.57 68.60 2.03 48.16 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 22 C 0.18 9.50 5.26 86.36 0.45 9.95 16 23 C -0.11 -4.84 5.68 30.67 0.17 -4.67 16 24 N -0.65 -17.41 5.33 -307.19 -1.64 -19.05 16 25 H 0.42 11.36 6.34 -92.71 -0.59 10.77 16 26 H 0.08 0.73 8.11 -2.39 -0.02 0.71 16 27 H 0.08 0.74 8.11 -2.39 -0.02 0.72 16 28 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.09 0.82 8.07 -2.39 -0.02 0.80 16 32 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 33 H 0.03 1.11 5.47 -2.39 -0.01 1.10 16 34 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.06 2.58 7.93 -2.39 -0.02 2.56 16 38 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.06 3.37 6.09 -2.39 -0.01 3.35 16 41 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -70.87 341.52 -0.24 -71.11 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.44 Total: 15.66 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 7.69 Total: 22.82 kcal Atomic # 7 Polarization: -141.16 SS G_CDS: -9.53 Total: -150.69 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.87 Total: -7.06 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -70.87 -0.24 -71.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612783760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.727 kcal (2) G-P(sol) polarization free energy of solvation -70.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds