Wall clock time and date at job start Tue Mar 31 2020 03:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46636 * 239.99897 * 3 2 1 5 5 H 1.48496 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47433 * 120.00168 * 3 2 1 7 7 C 1.40044 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00272 * 359.97438 * 7 2 1 10 10 O 1.21679 * 119.99861 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99962 * 179.97438 * 9 7 2 12 12 C 1.46504 * 120.00046 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47245 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47092 * 179.97438 * 13 12 11 15 15 C 1.50691 * 109.46976 * 179.97438 * 14 13 12 16 16 N 1.30692 * 126.43369 * 269.99592 * 15 14 13 17 17 N 1.28744 * 109.70263 * 179.62016 * 16 15 14 18 18 C 1.30109 * 109.59183 * 359.69321 * 17 16 15 19 19 N 1.35137 * 126.42926 * 90.00438 * 15 14 13 20 20 C 1.46311 * 127.25305 * 1.29455 * 19 15 14 21 21 C 1.53121 * 109.39331 * 207.60536 * 20 19 15 22 22 C 1.52800 * 109.69304 * 270.76052 * 21 20 19 23 23 C 1.52563 * 110.51474 * 61.41320 * 22 21 20 24 24 C 1.50670 * 127.32470 * 180.95030 * 18 17 16 25 25 H 0.96997 * 120.00172 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00282 * 0.02562 * 11 9 7 27 27 H 1.09002 * 109.46869 * 59.99524 * 12 11 9 28 28 H 1.09002 * 109.46817 * 299.99829 * 12 11 9 29 29 H 1.08997 * 109.47065 * 59.99650 * 13 12 11 30 30 H 1.09002 * 109.46943 * 299.99591 * 13 12 11 31 31 H 1.09002 * 109.46773 * 59.99516 * 14 13 12 32 32 H 1.08996 * 109.47332 * 300.00395 * 14 13 12 33 33 H 1.09002 * 109.48459 * 87.62634 * 20 19 15 34 34 H 1.09006 * 109.49415 * 327.59031 * 20 19 15 35 35 H 1.09000 * 109.43262 * 150.68375 * 21 20 19 36 36 H 1.09004 * 109.39267 * 30.79963 * 21 20 19 37 37 H 1.08999 * 109.26481 * 301.14144 * 22 21 20 38 38 H 1.09007 * 109.26461 * 181.68304 * 22 21 20 39 39 H 1.08999 * 109.45297 * 273.39890 * 23 22 21 40 40 H 1.09003 * 109.45599 * 153.45120 * 23 22 21 41 41 H 1.09002 * 109.53337 * 107.00566 * 24 18 17 42 42 H 1.09002 * 109.53319 * 346.85431 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9490 -3.6477 0.0017 12 6 1.2165 -4.9165 0.0022 13 6 2.2108 -6.0794 0.0028 14 6 1.4458 -7.4044 0.0040 15 6 2.4250 -8.5497 0.0039 16 7 2.9286 -9.1403 -1.0477 17 7 3.7362 -10.0719 -0.6772 18 6 3.7886 -10.1127 0.6222 19 7 2.9473 -9.1592 1.0911 20 6 2.6612 -8.8633 2.4952 21 6 3.8742 -9.2384 3.3511 22 6 3.7605 -10.6963 3.7945 23 6 3.7433 -11.6237 2.5833 24 6 4.6209 -11.0352 1.4745 25 1 -0.4850 0.8400 -0.0004 26 1 2.9189 -3.6477 0.0013 27 1 0.5894 -4.9743 -0.8875 28 1 0.5902 -4.9740 0.8925 29 1 2.8374 -6.0212 0.8927 30 1 2.8374 -6.0220 -0.8873 31 1 0.8188 -7.4627 -0.8857 32 1 0.8194 -7.4615 0.8942 33 1 1.7951 -9.4404 2.8192 34 1 2.4519 -7.7995 2.6074 35 1 3.9115 -8.5939 4.2294 36 1 4.7845 -9.1073 2.7661 37 1 2.8395 -10.8287 4.3622 38 1 4.6117 -10.9471 4.4276 39 1 2.7208 -11.7279 2.2203 40 1 4.1281 -12.6024 2.8699 41 1 5.4443 -10.4765 1.9194 42 1 5.0185 -11.8413 0.8579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613083318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:20 Heat of formation + Delta-G solvation = 16.561666 kcal Electronic energy + Delta-G solvation = -22868.874934 eV Core-core repulsion = 19463.303982 eV Total energy + Delta-G solvation = -3405.570953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.40851 -38.14775 -37.46158 -35.51263 -34.18072 -32.65857 -32.14773 -31.63186 -29.60765 -27.15991 -26.46488 -25.38315 -24.79100 -21.91348 -21.04872 -20.65368 -20.45808 -19.63698 -17.23406 -17.05427 -16.64009 -15.75889 -15.50559 -15.31375 -15.22580 -14.81746 -14.46047 -14.02286 -13.76521 -13.59291 -13.33477 -12.96112 -12.53248 -12.39726 -12.29798 -12.13669 -11.74483 -11.66805 -11.44064 -11.34626 -11.14431 -11.11773 -11.01782 -10.98834 -10.56702 -10.44674 -10.27953 -10.24822 -10.20807 -9.06242 -8.84494 -7.62384 -7.51108 -6.18464 -4.64095 1.68837 2.30507 2.80061 3.15863 3.20710 3.22660 3.90819 4.03921 4.09023 4.11283 4.18513 4.32266 4.57081 4.59197 4.65714 4.66250 4.79951 4.80602 4.98210 5.11137 5.19306 5.24023 5.32005 5.36025 5.43401 5.47619 5.54349 5.60860 5.70175 5.72830 5.76955 5.82183 5.97411 6.01306 6.12503 6.53707 6.55003 6.75698 7.43346 7.92621 8.09399 8.32599 8.70186 9.02487 9.53217 10.60225 10.78662 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.002665 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.541832 B =10503.371745 C =10824.710540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.769 5.769 12 C 0.135 3.865 13 C -0.121 4.121 14 C -0.031 4.031 15 C 0.187 3.813 16 N -0.296 5.296 17 N -0.295 5.295 18 C 0.171 3.829 19 N -0.467 5.467 20 C 0.101 3.899 21 C -0.141 4.141 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.035 4.035 25 H 0.269 0.731 26 H 0.380 0.620 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.568 -21.473 9.814 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.464 6.464 11 N -0.425 5.425 12 C 0.009 3.991 13 C -0.161 4.161 14 C -0.071 4.071 15 C -0.080 4.080 16 N -0.135 5.135 17 N -0.135 5.135 18 C -0.096 4.096 19 N -0.158 5.158 20 C -0.022 4.022 21 C -0.178 4.178 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.074 4.074 25 H 0.079 0.921 26 H 0.211 0.789 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.732 -21.709 8.372 24.518 hybrid contribution 0.640 1.102 1.344 1.852 sum 8.373 -20.607 9.716 24.272 Atomic orbital electron populations 1.70009 1.07054 1.27366 1.35325 1.25707 0.94622 1.00281 0.92621 0.86433 0.79813 0.81045 0.79436 1.19266 1.20553 1.19324 1.20857 0.93543 0.89457 1.54494 0.91514 1.18204 0.87198 0.82437 0.76329 1.90594 1.14090 1.86877 1.54882 1.46126 1.08545 1.04913 1.82888 1.20816 0.93743 0.83600 1.00891 1.21754 0.98842 0.92617 1.02838 1.20029 0.94021 0.88103 1.04996 1.24838 1.01089 0.99409 0.82687 1.74390 1.09506 1.05820 1.23811 1.74127 1.16018 1.15319 1.08024 1.24585 0.97527 0.94903 0.92585 1.46113 1.33821 1.27440 1.08475 1.22058 0.99663 1.03450 0.76980 1.22023 0.97775 0.97732 1.00308 1.21610 1.03075 0.93716 0.97777 1.21615 1.00468 0.99448 0.94643 1.20173 0.95876 0.96528 0.94843 0.92051 0.78904 0.92987 0.93385 0.92023 0.90748 0.87827 0.89800 0.89269 0.88149 0.89182 0.90032 0.91187 0.90873 0.91658 0.90207 0.89067 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.17 11.83 55.55 0.66 -22.51 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.18 29.56 -169.99 -5.02 15.15 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.55 -15.51 9.54 -35.63 -0.34 -15.85 16 8 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 9 C 0.55 15.84 7.75 -12.99 -0.10 15.74 16 10 O -0.58 -18.90 15.02 5.21 0.08 -18.82 16 11 N -0.77 -17.08 5.55 -61.72 -0.34 -17.42 16 12 C 0.13 2.47 5.67 -4.04 -0.02 2.45 16 13 C -0.12 -1.66 5.31 -26.73 -0.14 -1.80 16 14 C -0.03 -0.37 5.44 -27.89 -0.15 -0.52 16 15 C 0.19 2.48 7.29 -155.17 -1.13 1.35 16 16 N -0.30 -4.84 12.22 32.75 0.40 -4.44 16 17 N -0.30 -4.57 12.21 32.73 0.40 -4.17 16 18 C 0.17 1.98 6.94 -155.31 -1.08 0.90 16 19 N -0.47 -5.02 3.06 -110.89 -0.34 -5.35 16 20 C 0.10 0.71 6.11 -4.08 -0.02 0.68 16 21 C -0.14 -0.73 5.55 -26.77 -0.15 -0.88 16 22 C -0.12 -0.51 5.67 -27.06 -0.15 -0.66 16 23 C -0.12 -0.64 5.68 -26.87 -0.15 -0.80 16 24 C -0.03 -0.25 5.54 -27.81 -0.15 -0.40 16 25 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 26 H 0.38 7.43 8.45 -40.82 -0.35 7.09 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 0.82 7.91 -51.93 -0.41 0.41 16 33 H 0.09 0.52 7.82 -51.93 -0.41 0.11 16 34 H 0.10 0.68 7.92 -51.93 -0.41 0.27 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.51 5.69 -51.93 -0.30 0.21 16 37 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 38 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 0.43 7.84 -51.93 -0.41 0.03 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.54 6.33 -51.93 -0.33 0.21 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 342.23 15.07 5.16 5.16 Total: -1.00 -37.95 342.23 -9.08 -47.03 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.38 Total: 2.81 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -3.70 Total: 2.57 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.78 Total: -53.90 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.08 Total: -18.82 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.95 -9.08 -47.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613083318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.596 kcal (2) G-P(sol) polarization free energy of solvation -37.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds