Wall clock time and date at job start Tue Mar 31 2020 03:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46636 * 239.99897 * 3 2 1 5 5 H 1.48496 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47433 * 120.00168 * 3 2 1 7 7 C 1.40044 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00272 * 359.97438 * 7 2 1 10 10 O 1.21679 * 119.99861 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99962 * 179.97438 * 9 7 2 12 12 C 1.46504 * 120.00046 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47245 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47092 * 179.97438 * 13 12 11 15 15 C 1.50691 * 109.46976 * 179.97438 * 14 13 12 16 16 N 1.30692 * 126.43369 * 269.99592 * 15 14 13 17 17 N 1.28744 * 109.70263 * 179.62016 * 16 15 14 18 18 C 1.30109 * 109.59183 * 359.69321 * 17 16 15 19 19 N 1.35137 * 126.42926 * 90.00438 * 15 14 13 20 20 C 1.46311 * 127.25305 * 1.29455 * 19 15 14 21 21 C 1.53121 * 109.39331 * 207.60536 * 20 19 15 22 22 C 1.52800 * 109.69304 * 270.76052 * 21 20 19 23 23 C 1.52563 * 110.51474 * 61.41320 * 22 21 20 24 24 C 1.50670 * 127.32470 * 180.95030 * 18 17 16 25 25 H 0.96997 * 120.00172 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00282 * 0.02562 * 11 9 7 27 27 H 1.09002 * 109.46869 * 59.99524 * 12 11 9 28 28 H 1.09002 * 109.46817 * 299.99829 * 12 11 9 29 29 H 1.08997 * 109.47065 * 59.99650 * 13 12 11 30 30 H 1.09002 * 109.46943 * 299.99591 * 13 12 11 31 31 H 1.09002 * 109.46773 * 59.99516 * 14 13 12 32 32 H 1.08996 * 109.47332 * 300.00395 * 14 13 12 33 33 H 1.09002 * 109.48459 * 87.62634 * 20 19 15 34 34 H 1.09006 * 109.49415 * 327.59031 * 20 19 15 35 35 H 1.09000 * 109.43262 * 150.68375 * 21 20 19 36 36 H 1.09004 * 109.39267 * 30.79963 * 21 20 19 37 37 H 1.08999 * 109.26481 * 301.14144 * 22 21 20 38 38 H 1.09007 * 109.26461 * 181.68304 * 22 21 20 39 39 H 1.08999 * 109.45297 * 273.39890 * 23 22 21 40 40 H 1.09003 * 109.45599 * 153.45120 * 23 22 21 41 41 H 1.09002 * 109.53337 * 107.00566 * 24 18 17 42 42 H 1.09002 * 109.53319 * 346.85431 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9490 -3.6477 0.0017 12 6 1.2165 -4.9165 0.0022 13 6 2.2108 -6.0794 0.0028 14 6 1.4458 -7.4044 0.0040 15 6 2.4250 -8.5497 0.0039 16 7 2.9286 -9.1403 -1.0477 17 7 3.7362 -10.0719 -0.6772 18 6 3.7886 -10.1127 0.6222 19 7 2.9473 -9.1592 1.0911 20 6 2.6612 -8.8633 2.4952 21 6 3.8742 -9.2384 3.3511 22 6 3.7605 -10.6963 3.7945 23 6 3.7433 -11.6237 2.5833 24 6 4.6209 -11.0352 1.4745 25 1 -0.4850 0.8400 -0.0004 26 1 2.9189 -3.6477 0.0013 27 1 0.5894 -4.9743 -0.8875 28 1 0.5902 -4.9740 0.8925 29 1 2.8374 -6.0212 0.8927 30 1 2.8374 -6.0220 -0.8873 31 1 0.8188 -7.4627 -0.8857 32 1 0.8194 -7.4615 0.8942 33 1 1.7951 -9.4404 2.8192 34 1 2.4519 -7.7995 2.6074 35 1 3.9115 -8.5939 4.2294 36 1 4.7845 -9.1073 2.7661 37 1 2.8395 -10.8287 4.3622 38 1 4.6117 -10.9471 4.4276 39 1 2.7208 -11.7279 2.2203 40 1 4.1281 -12.6024 2.8699 41 1 5.4443 -10.4765 1.9194 42 1 5.0185 -11.8413 0.8579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613083318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:19 Heat of formation + Delta-G solvation = -9.610288 kcal Electronic energy + Delta-G solvation = -22870.009836 eV Core-core repulsion = 19463.303982 eV Total energy + Delta-G solvation = -3406.705854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.33604 -39.46298 -38.70388 -36.86634 -35.27151 -34.58621 -33.62131 -32.49870 -30.69612 -28.77388 -27.36723 -26.67399 -25.58145 -23.26312 -22.03273 -21.68610 -21.41956 -20.88100 -19.16525 -17.91870 -17.52351 -17.34709 -16.69003 -16.40689 -16.14023 -15.92873 -15.88694 -15.26586 -14.91709 -14.55330 -14.29372 -14.20385 -13.89157 -13.49366 -13.32002 -13.05425 -12.99943 -12.85728 -12.70304 -12.62713 -12.45099 -12.35262 -12.05320 -12.00547 -11.93475 -11.85339 -11.48102 -11.17361 -10.98199 -10.91614 -10.08849 -9.86142 -9.47908 -8.28991 -6.85600 0.78652 1.40656 1.44071 1.51729 1.55852 1.78248 2.25326 2.47494 3.01004 3.23914 3.39537 3.53925 3.61916 3.66642 3.77973 3.89739 4.12214 4.14131 4.16791 4.18733 4.22165 4.34052 4.51200 4.56762 4.62310 4.74025 4.79215 4.81895 4.91646 4.94194 5.08369 5.11265 5.14677 5.17785 5.23782 5.30941 5.31989 5.36714 5.87720 5.95483 6.23456 6.27803 6.86894 7.54378 7.70983 8.49152 8.67431 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.002665 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.541832 B =10503.371745 C =10824.710540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.537 3.463 10 O -0.632 6.632 11 N -0.758 5.758 12 C 0.137 3.863 13 C -0.099 4.099 14 C -0.024 4.024 15 C 0.182 3.818 16 N -0.342 5.342 17 N -0.345 5.345 18 C 0.183 3.817 19 N -0.462 5.462 20 C 0.090 3.910 21 C -0.137 4.137 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.035 4.035 25 H 0.275 0.725 26 H 0.394 0.606 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.482 -21.621 11.980 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.612 4.612 8 H 0.105 0.895 9 C 0.341 3.659 10 O -0.520 6.520 11 N -0.412 5.412 12 C 0.012 3.988 13 C -0.138 4.138 14 C -0.064 4.064 15 C -0.087 4.087 16 N -0.181 5.181 17 N -0.184 5.184 18 C -0.086 4.086 19 N -0.152 5.152 20 C -0.031 4.031 21 C -0.175 4.175 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.075 4.075 25 H 0.085 0.915 26 H 0.228 0.772 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.694 -21.911 10.553 26.181 hybrid contribution 0.048 1.043 0.703 1.259 sum 9.742 -20.868 11.257 25.633 Atomic orbital electron populations 1.70178 1.09519 1.29039 1.36435 1.26980 0.95540 1.04979 0.91202 0.85069 0.78199 0.74730 0.80275 1.18043 1.19890 1.17653 1.21423 0.94741 0.90199 1.54844 0.89497 1.18588 0.86839 0.84385 0.76078 1.90547 1.16170 1.88015 1.57235 1.45813 1.09321 1.04875 1.81215 1.20912 0.94490 0.83469 0.99921 1.21503 0.97636 0.91517 1.03181 1.19961 0.93706 0.86624 1.06092 1.24866 1.01135 0.99602 0.83100 1.74269 1.10886 1.07100 1.25872 1.74024 1.17511 1.16457 1.10386 1.25341 0.96668 0.94536 0.92036 1.46325 1.32919 1.26590 1.09393 1.22457 1.01336 1.04171 0.75104 1.22044 0.96204 0.98935 1.00282 1.21609 1.04319 0.92472 0.97317 1.21603 0.99071 1.00664 0.94262 1.20432 0.96069 0.96012 0.94957 0.91529 0.77215 0.94770 0.93596 0.90302 0.91709 0.88334 0.87266 0.87778 0.87651 0.87460 0.91009 0.90270 0.89238 0.93278 0.88263 0.87339 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.53 11.83 21.83 0.26 -50.28 16 2 C 0.03 1.57 5.50 85.30 0.47 2.04 16 3 Si 1.00 40.87 29.56 68.60 2.03 42.90 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 7 C -0.58 -32.71 9.54 24.83 0.24 -32.47 16 8 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 9 C 0.54 31.26 7.75 86.36 0.67 31.92 16 10 O -0.63 -42.50 15.02 -4.28 -0.06 -42.57 16 11 N -0.76 -33.75 5.55 -467.40 -2.59 -36.34 16 12 C 0.14 5.03 5.67 86.38 0.49 5.52 16 13 C -0.10 -2.63 5.31 30.59 0.16 -2.47 16 14 C -0.02 -0.55 5.44 29.85 0.16 -0.38 16 15 C 0.18 4.77 7.29 138.04 1.01 5.78 16 16 N -0.34 -11.47 12.22 -50.28 -0.61 -12.08 16 17 N -0.34 -10.88 12.21 -50.36 -0.61 -11.50 16 18 C 0.18 4.10 6.94 138.08 0.96 5.06 16 19 N -0.46 -9.35 3.06 -504.74 -1.54 -10.90 16 20 C 0.09 1.04 6.11 86.46 0.53 1.57 16 21 C -0.14 -0.99 5.55 30.57 0.17 -0.82 16 22 C -0.12 -0.56 5.67 30.38 0.17 -0.38 16 23 C -0.12 -0.92 5.68 30.50 0.17 -0.74 16 24 C -0.04 -0.44 5.54 29.89 0.17 -0.28 16 25 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 26 H 0.39 15.15 8.45 -92.71 -0.78 14.37 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.11 1.95 7.91 -2.39 -0.02 1.93 16 33 H 0.10 0.92 7.82 -2.39 -0.02 0.90 16 34 H 0.11 1.13 7.92 -2.38 -0.02 1.11 16 35 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 0.69 5.69 -2.38 -0.01 0.68 16 37 H 0.08 0.28 8.09 -2.39 -0.02 0.26 16 38 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 39 H 0.05 0.56 7.84 -2.39 -0.02 0.54 16 40 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.11 1.01 6.33 -2.39 -0.02 1.00 16 42 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -86.15 342.23 2.46 -83.69 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.25 Total: 22.73 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 5.36 Total: 14.34 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -5.11 Total: -121.09 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.06 Total: -42.57 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -86.15 2.46 -83.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613083318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.080 kcal (2) G-P(sol) polarization free energy of solvation -86.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds