Wall clock time and date at job start Tue Mar 31 2020 03:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47035 * 2 1 4 4 C 1.50703 * 109.47040 * 240.00208 * 2 1 3 5 5 C 1.38236 * 119.99798 * 116.23310 * 4 2 1 6 6 C 1.38236 * 119.99895 * 179.97438 * 5 4 2 7 7 C 1.38241 * 119.99816 * 0.02562 * 6 5 4 8 8 C 1.38233 * 120.00233 * 359.97418 * 7 6 5 9 9 C 1.38235 * 119.99975 * 359.97438 * 8 7 6 10 10 C 1.52998 * 109.47495 * 120.00285 * 2 1 3 11 11 H 1.08997 * 109.47099 * 62.16875 * 10 2 1 12 12 C 1.53001 * 109.47007 * 302.17061 * 10 2 1 13 13 O 1.42904 * 109.47116 * 304.67456 * 12 10 2 14 14 N 1.46892 * 109.47410 * 182.17087 * 10 2 1 15 15 C 1.46901 * 111.00318 * 204.99947 * 14 10 2 16 16 C 1.50702 * 109.47282 * 179.97438 * 15 14 10 17 17 O 1.21298 * 119.99801 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99672 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99399 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00165 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99757 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00066 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99842 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47466 * 90.00060 * 23 21 19 25 25 H 1.48504 * 109.46768 * 209.99710 * 23 21 19 26 26 H 1.48497 * 109.47287 * 329.99541 * 23 21 19 27 27 H 1.09004 * 109.46977 * 306.67260 * 1 2 3 28 28 H 1.09001 * 109.47543 * 66.67490 * 1 2 3 29 29 H 1.09003 * 109.47175 * 186.67931 * 1 2 3 30 30 H 1.08002 * 120.00350 * 0.26412 * 5 4 2 31 31 H 1.07996 * 120.00039 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.99657 * 179.97438 * 7 6 5 33 33 H 1.07997 * 120.00667 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.00472 * 179.97438 * 9 8 7 35 35 H 1.09005 * 109.47034 * 64.67505 * 12 10 2 36 36 H 1.08999 * 109.47200 * 184.67464 * 12 10 2 37 37 H 0.96697 * 114.00015 * 179.97438 * 13 12 10 38 38 H 1.00910 * 110.99870 * 328.95476 * 14 10 2 39 39 H 1.08991 * 109.46766 * 300.00090 * 15 14 10 40 40 H 1.08998 * 109.46841 * 60.00084 * 15 14 10 41 41 H 0.96995 * 120.00670 * 359.97438 * 18 16 15 42 42 H 0.97001 * 119.99934 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.7616 -0.0180 -2.1790 6 6 3.2228 -0.6697 -3.3075 7 6 2.9543 -2.0137 -3.4877 8 6 2.2250 -2.7061 -2.5392 9 6 1.7647 -2.0547 -1.4102 10 6 2.0401 -0.7213 1.2492 11 1 1.7089 -1.7595 1.2299 12 6 1.4860 -0.0323 2.4979 13 8 1.8285 1.3547 2.4682 14 7 3.5080 -0.6760 1.2757 15 6 4.0552 -1.7927 2.0577 16 6 5.5602 -1.7134 2.0616 17 8 6.1216 -0.8146 1.4715 18 7 6.2820 -2.6411 2.7209 19 6 7.6511 -2.5686 2.7250 20 1 8.1511 -1.7683 2.1995 21 6 8.3955 -3.5247 3.4051 22 7 9.7078 -3.4555 3.4086 23 14 7.5307 -4.9091 4.3133 24 1 7.3472 -6.0634 3.3973 25 1 8.3529 -5.3269 5.4773 26 1 6.2048 -4.4378 4.7875 27 1 -0.3633 0.6138 0.8243 28 1 -0.3634 0.4069 -0.9437 29 1 -0.3634 -1.0207 0.1195 30 1 2.9750 1.0311 -2.0361 31 1 3.7922 -0.1286 -4.0487 32 1 3.3143 -2.5228 -4.3695 33 1 2.0148 -3.7560 -2.6801 34 1 1.1946 -2.5954 -0.6694 35 1 0.4013 -0.1383 2.5202 36 1 1.9145 -0.4935 3.3877 37 1 1.5083 1.8553 3.2310 38 1 3.8866 -0.6698 0.3403 39 1 3.6853 -1.7351 3.0812 40 1 3.7427 -2.7366 1.6109 41 1 5.8331 -3.3596 3.1932 42 1 10.2274 -4.1232 3.8831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613388813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:40 Heat of formation + Delta-G solvation = -58.599655 kcal Electronic energy + Delta-G solvation = -23535.840703 eV Core-core repulsion = 20094.717760 eV Total energy + Delta-G solvation = -3441.122943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.91053 -38.42306 -37.54074 -35.33080 -34.02947 -33.24832 -31.59999 -30.92509 -29.96663 -28.12007 -26.32538 -24.59208 -23.31388 -22.69475 -21.51418 -19.73053 -19.25881 -18.27525 -17.45956 -16.82409 -16.38195 -15.54101 -15.42180 -14.89169 -14.79854 -14.52413 -14.33604 -13.94464 -13.61078 -13.34289 -13.22210 -13.02633 -12.89327 -12.76913 -12.41203 -12.18816 -12.11416 -11.67534 -11.52440 -11.43361 -11.23105 -11.13067 -10.71535 -10.56819 -10.38880 -9.93625 -9.86437 -9.52534 -8.91902 -8.71169 -8.48159 -8.13935 -8.01078 -6.26871 -3.77815 1.34039 1.40466 3.04849 3.08723 3.16735 3.77034 3.80783 4.09141 4.14008 4.39471 4.55729 4.74709 4.86316 4.97285 4.99524 5.10715 5.22276 5.25078 5.28297 5.34067 5.43645 5.48242 5.54074 5.55084 5.65616 5.70515 5.80137 5.87755 5.98038 5.98277 6.01889 6.07072 6.19651 6.46526 6.51812 6.65174 6.99745 7.23709 7.63061 7.70379 7.77858 8.19755 8.65222 9.00042 9.47410 9.89080 10.86545 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.004325 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.378964 B = 6472.616457 C = 7413.241205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 H 0.098 0.902 4 C -0.081 4.081 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.124 4.124 8 C -0.119 4.119 9 C -0.119 4.119 10 C 0.096 3.904 11 H 0.053 0.947 12 C 0.088 3.912 13 O -0.552 6.552 14 N -0.652 5.652 15 C 0.047 3.953 16 C 0.453 3.547 17 O -0.560 6.560 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.883 5.883 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.270 1.270 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.369 0.631 38 H 0.353 0.647 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.369 0.631 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.251 2.101 -6.765 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 H 0.116 0.884 4 C -0.081 4.081 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.142 4.142 8 C -0.137 4.137 9 C -0.137 4.137 10 C -0.015 4.015 11 H 0.071 0.929 12 C 0.009 3.991 13 O -0.355 6.355 14 N -0.286 5.286 15 C -0.086 4.086 16 C 0.239 3.761 17 O -0.442 6.442 18 N -0.233 5.233 19 C -0.431 4.431 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.524 5.524 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.215 0.785 38 H 0.175 0.825 39 H 0.102 0.898 40 H 0.059 0.941 41 H 0.202 0.798 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.324 2.885 -7.154 22.676 hybrid contribution -0.815 -1.978 0.819 2.291 sum -22.139 0.907 -6.335 23.046 Atomic orbital electron populations 1.21818 0.94110 1.01650 1.02038 1.20233 0.95602 1.00713 0.90279 0.88403 1.19930 0.98008 0.94024 0.96134 1.21142 0.97493 1.00217 0.93849 1.21166 0.99537 0.94857 0.97840 1.21138 0.99021 0.94695 0.99386 1.21103 0.98488 0.99676 0.94483 1.20968 1.00674 0.94274 0.97769 1.21656 0.89298 0.96798 0.93724 0.92929 1.22204 0.96544 0.82917 0.97461 1.86616 1.81072 1.19873 1.47969 1.60072 1.03369 1.44310 1.20837 1.21775 0.94949 0.92434 0.99478 1.19699 0.87864 0.84419 0.84166 1.90571 1.71923 1.35163 1.46503 1.42204 1.07454 1.25668 1.47990 1.19439 0.79103 1.13038 1.31562 0.86311 1.25023 0.95378 0.97977 0.97803 1.69624 1.04363 1.35715 1.42662 0.86679 0.79543 0.82829 0.80382 1.19707 1.20197 1.19539 0.91959 0.92441 0.92865 0.85833 0.86083 0.86309 0.86334 0.86529 0.93876 0.93850 0.78535 0.82508 0.89819 0.94077 0.79796 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.35 37.16 0.31 -0.93 16 2 C -0.05 -0.57 2.06 -91.77 -0.19 -0.76 16 3 H 0.10 1.29 7.38 -51.93 -0.38 0.91 16 4 C -0.08 -0.98 3.52 -104.62 -0.37 -1.35 16 5 C -0.11 -1.35 9.64 -39.58 -0.38 -1.74 16 6 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 7 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 8 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 9 C -0.12 -1.37 8.80 -39.58 -0.35 -1.72 16 10 C 0.10 1.20 1.84 -67.72 -0.12 1.08 16 11 H 0.05 0.61 6.76 -51.93 -0.35 0.26 16 12 C 0.09 0.98 6.25 37.16 0.23 1.21 16 13 O -0.55 -6.78 12.78 -35.23 -0.45 -7.23 16 14 N -0.65 -11.02 5.88 -108.00 -0.63 -11.65 16 15 C 0.05 0.82 5.97 -4.97 -0.03 0.79 16 16 C 0.45 10.79 7.82 -10.99 -0.09 10.70 16 17 O -0.56 -15.78 15.78 5.54 0.09 -15.70 16 18 N -0.59 -14.63 5.09 -10.96 -0.06 -14.69 16 19 C -0.30 -8.79 10.16 -14.93 -0.15 -8.94 16 20 H 0.12 3.94 7.39 -52.49 -0.39 3.56 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -26.27 13.96 55.50 0.77 -25.50 16 23 Si 0.88 19.73 27.74 -169.99 -4.71 15.02 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 27 H 0.06 0.52 6.89 -51.93 -0.36 0.16 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.43 7.86 -51.93 -0.41 0.02 16 30 H 0.12 1.44 7.95 -52.49 -0.42 1.02 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.17 7.17 -52.49 -0.38 0.79 16 35 H 0.04 0.37 6.81 -51.93 -0.35 0.02 16 36 H 0.04 0.50 7.36 -51.93 -0.38 0.12 16 37 H 0.37 2.88 9.12 45.56 0.42 3.30 16 38 H 0.35 6.51 6.91 -39.29 -0.27 6.24 16 39 H 0.08 1.33 7.37 -51.93 -0.38 0.95 16 40 H 0.04 0.64 8.05 -51.93 -0.42 0.23 16 41 H 0.37 7.99 5.76 -40.82 -0.24 7.76 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -34.94 345.38 -7.38 -42.32 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -5.17 Total: 18.14 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -2.43 Total: -5.93 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.08 Total: -51.83 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.36 Total: -22.93 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.71 Total: 15.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.94 -7.38 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613388813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.277 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds