Wall clock time and date at job start Tue Mar 31 2020 03:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47035 * 2 1 4 4 C 1.50703 * 109.47040 * 240.00208 * 2 1 3 5 5 C 1.38236 * 119.99798 * 116.23310 * 4 2 1 6 6 C 1.38236 * 119.99895 * 179.97438 * 5 4 2 7 7 C 1.38241 * 119.99816 * 0.02562 * 6 5 4 8 8 C 1.38233 * 120.00233 * 359.97418 * 7 6 5 9 9 C 1.38235 * 119.99975 * 359.97438 * 8 7 6 10 10 C 1.52998 * 109.47495 * 120.00285 * 2 1 3 11 11 H 1.08997 * 109.47099 * 62.16875 * 10 2 1 12 12 C 1.53001 * 109.47007 * 302.17061 * 10 2 1 13 13 O 1.42904 * 109.47116 * 304.67456 * 12 10 2 14 14 N 1.46892 * 109.47410 * 182.17087 * 10 2 1 15 15 C 1.46901 * 111.00318 * 204.99947 * 14 10 2 16 16 C 1.50702 * 109.47282 * 179.97438 * 15 14 10 17 17 O 1.21298 * 119.99801 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99672 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99399 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00165 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99757 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00066 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99842 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47466 * 90.00060 * 23 21 19 25 25 H 1.48504 * 109.46768 * 209.99710 * 23 21 19 26 26 H 1.48497 * 109.47287 * 329.99541 * 23 21 19 27 27 H 1.09004 * 109.46977 * 306.67260 * 1 2 3 28 28 H 1.09001 * 109.47543 * 66.67490 * 1 2 3 29 29 H 1.09003 * 109.47175 * 186.67931 * 1 2 3 30 30 H 1.08002 * 120.00350 * 0.26412 * 5 4 2 31 31 H 1.07996 * 120.00039 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.99657 * 179.97438 * 7 6 5 33 33 H 1.07997 * 120.00667 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.00472 * 179.97438 * 9 8 7 35 35 H 1.09005 * 109.47034 * 64.67505 * 12 10 2 36 36 H 1.08999 * 109.47200 * 184.67464 * 12 10 2 37 37 H 0.96697 * 114.00015 * 179.97438 * 13 12 10 38 38 H 1.00910 * 110.99870 * 328.95476 * 14 10 2 39 39 H 1.08991 * 109.46766 * 300.00090 * 15 14 10 40 40 H 1.08998 * 109.46841 * 60.00084 * 15 14 10 41 41 H 0.96995 * 120.00670 * 359.97438 * 18 16 15 42 42 H 0.97001 * 119.99934 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.7616 -0.0180 -2.1790 6 6 3.2228 -0.6697 -3.3075 7 6 2.9543 -2.0137 -3.4877 8 6 2.2250 -2.7061 -2.5392 9 6 1.7647 -2.0547 -1.4102 10 6 2.0401 -0.7213 1.2492 11 1 1.7089 -1.7595 1.2299 12 6 1.4860 -0.0323 2.4979 13 8 1.8285 1.3547 2.4682 14 7 3.5080 -0.6760 1.2757 15 6 4.0552 -1.7927 2.0577 16 6 5.5602 -1.7134 2.0616 17 8 6.1216 -0.8146 1.4715 18 7 6.2820 -2.6411 2.7209 19 6 7.6511 -2.5686 2.7250 20 1 8.1511 -1.7683 2.1995 21 6 8.3955 -3.5247 3.4051 22 7 9.7078 -3.4555 3.4086 23 14 7.5307 -4.9091 4.3133 24 1 7.3472 -6.0634 3.3973 25 1 8.3529 -5.3269 5.4773 26 1 6.2048 -4.4378 4.7875 27 1 -0.3633 0.6138 0.8243 28 1 -0.3634 0.4069 -0.9437 29 1 -0.3634 -1.0207 0.1195 30 1 2.9750 1.0311 -2.0361 31 1 3.7922 -0.1286 -4.0487 32 1 3.3143 -2.5228 -4.3695 33 1 2.0148 -3.7560 -2.6801 34 1 1.1946 -2.5954 -0.6694 35 1 0.4013 -0.1383 2.5202 36 1 1.9145 -0.4935 3.3877 37 1 1.5083 1.8553 3.2310 38 1 3.8866 -0.6698 0.3403 39 1 3.6853 -1.7351 3.0812 40 1 3.7427 -2.7366 1.6109 41 1 5.8331 -3.3596 3.1932 42 1 10.2274 -4.1232 3.8831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613388813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:39 Heat of formation + Delta-G solvation = -86.711685 kcal Electronic energy + Delta-G solvation = -23537.059732 eV Core-core repulsion = 20094.717760 eV Total energy + Delta-G solvation = -3442.341972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88332 -40.14985 -38.58280 -36.37305 -35.95128 -34.47956 -33.72997 -31.78928 -30.88257 -29.27329 -27.67768 -26.03192 -24.56720 -23.58244 -22.45554 -21.31815 -20.65037 -20.16106 -18.34201 -18.01120 -17.51012 -17.15331 -16.65002 -16.28807 -16.00474 -15.81100 -15.46965 -15.12773 -14.95300 -14.69642 -14.32382 -14.23361 -14.09509 -13.90559 -13.74695 -13.71063 -13.08976 -12.94277 -12.78818 -12.47357 -12.43133 -12.37204 -12.08442 -11.97796 -11.57440 -11.52402 -11.25231 -10.69017 -10.44129 -10.25784 -9.80409 -9.57208 -9.25159 -8.41833 -6.02960 0.46521 0.51788 1.29158 1.34829 1.43996 1.94745 2.22587 2.71267 2.89018 3.14316 3.37201 3.55975 3.70720 3.90826 4.11378 4.12754 4.16657 4.28700 4.35724 4.43049 4.44623 4.47381 4.57537 4.64676 4.67214 4.74110 4.75633 4.85503 5.02910 5.14546 5.19333 5.28937 5.35582 5.52697 5.59979 5.64361 5.76034 5.91463 6.11324 6.17202 6.37662 6.59620 6.87318 7.11897 7.38618 7.96021 8.76120 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.004325 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.378964 B = 6472.616457 C = 7413.241205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.042 4.042 3 H 0.072 0.928 4 C -0.088 4.088 5 C -0.133 4.133 6 C -0.130 4.130 7 C -0.136 4.136 8 C -0.126 4.126 9 C -0.125 4.125 10 C 0.093 3.907 11 H 0.074 0.926 12 C 0.086 3.914 13 O -0.579 6.579 14 N -0.673 5.673 15 C 0.061 3.939 16 C 0.449 3.551 17 O -0.614 6.614 18 N -0.590 5.590 19 C -0.330 4.330 20 H 0.052 0.948 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.231 1.231 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.387 0.613 38 H 0.340 0.660 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.390 0.610 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.857 -0.468 -5.372 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.061 4.061 3 H 0.090 0.910 4 C -0.088 4.088 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.144 4.144 9 C -0.143 4.143 10 C -0.016 4.016 11 H 0.092 0.908 12 C 0.007 3.993 13 O -0.385 6.385 14 N -0.306 5.306 15 C -0.071 4.071 16 C 0.236 3.764 17 O -0.498 6.498 18 N -0.232 5.232 19 C -0.459 4.459 20 H 0.071 0.929 21 C -0.213 4.213 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.154 1.154 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.235 0.765 38 H 0.159 0.841 39 H 0.130 0.870 40 H 0.091 0.909 41 H 0.225 0.775 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.976 0.330 -5.745 25.631 hybrid contribution 0.380 -1.046 0.298 1.152 sum -24.596 -0.716 -5.448 25.202 Atomic orbital electron populations 1.21777 0.91866 1.02855 1.02437 1.20137 0.97255 0.99012 0.89688 0.90971 1.20075 0.97936 0.94606 0.96196 1.21298 0.98567 1.00396 0.94809 1.21404 0.99824 0.95558 0.98043 1.21442 0.99109 0.94573 1.00297 1.21448 0.97934 1.00799 0.94234 1.21215 1.00752 0.93956 0.98356 1.21862 0.86476 0.98340 0.94954 0.90797 1.22306 0.98391 0.82204 0.96374 1.86579 1.81742 1.20797 1.49402 1.60106 1.06162 1.44362 1.19997 1.21700 0.89507 0.94320 1.01617 1.20980 0.90665 0.82765 0.81942 1.90549 1.73827 1.37181 1.48266 1.42012 1.05748 1.26743 1.48722 1.19004 0.81481 1.12561 1.32859 0.92942 1.26129 0.96050 1.01041 0.98088 1.69810 1.06805 1.37324 1.43622 0.85356 0.79661 0.77903 0.78545 1.18030 1.19860 1.15440 0.91052 0.92534 0.91246 0.86403 0.85135 0.84593 0.84181 0.84513 0.90527 0.93997 0.76515 0.84057 0.87037 0.90897 0.77479 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.35 71.98 0.60 -1.40 16 2 C -0.04 -0.91 2.06 -11.54 -0.02 -0.93 16 3 H 0.07 1.92 7.38 -2.39 -0.02 1.91 16 4 C -0.09 -2.06 3.52 -19.86 -0.07 -2.13 16 5 C -0.13 -3.40 9.64 22.27 0.21 -3.18 16 6 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 7 C -0.14 -2.98 10.05 22.27 0.22 -2.75 16 8 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 9 C -0.12 -2.60 8.80 22.27 0.20 -2.40 16 10 C 0.09 2.08 1.84 44.92 0.08 2.17 16 11 H 0.07 1.36 6.76 -2.39 -0.02 1.35 16 12 C 0.09 1.64 6.25 71.98 0.45 2.09 16 13 O -0.58 -13.26 12.78 -148.98 -1.90 -15.16 16 14 N -0.67 -21.91 5.88 -495.61 -2.91 -24.82 16 15 C 0.06 2.00 5.97 85.56 0.51 2.51 16 16 C 0.45 21.39 7.82 87.66 0.69 22.07 16 17 O -0.61 -36.14 15.78 -3.08 -0.05 -36.18 16 18 N -0.59 -28.83 5.09 -306.97 -1.56 -30.40 16 19 C -0.33 -19.88 10.16 84.04 0.85 -19.03 16 20 H 0.05 3.78 7.39 -2.91 -0.02 3.75 16 21 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 22 N -0.93 -57.28 13.96 21.66 0.30 -56.98 16 23 Si 0.97 39.21 27.74 68.60 1.90 41.11 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 27 H 0.07 0.96 6.89 -2.39 -0.02 0.94 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.85 7.86 -2.39 -0.02 0.83 16 30 H 0.12 2.98 7.95 -2.91 -0.02 2.96 16 31 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.14 2.21 7.17 -2.91 -0.02 2.19 16 35 H 0.08 0.97 6.81 -2.38 -0.02 0.95 16 36 H 0.04 0.81 7.36 -2.39 -0.02 0.80 16 37 H 0.39 5.35 9.12 -74.06 -0.68 4.67 16 38 H 0.34 12.58 6.91 -89.69 -0.62 11.96 16 39 H 0.11 3.08 7.37 -2.39 -0.02 3.06 16 40 H 0.07 1.97 8.05 -2.39 -0.02 1.95 16 41 H 0.39 15.65 5.76 -92.71 -0.53 15.12 16 42 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -81.96 345.38 -0.42 -82.38 By element: Atomic # 1 Polarization: 49.51 SS G_CDS: -0.83 Total: 48.68 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 4.64 Total: -8.62 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -4.17 Total: -112.20 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -1.95 Total: -51.34 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.90 Total: 41.11 kcal Total: -81.96 -0.42 -82.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613388813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.332 kcal (2) G-P(sol) polarization free energy of solvation -81.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds