Wall clock time and date at job start Tue Mar 31 2020 04:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35372 * 127.24939 * 2 1 4 4 N 1.35031 * 107.22894 * 179.88558 * 3 2 1 5 5 H 0.96996 * 124.87962 * 180.15300 * 4 3 2 6 6 N 1.28463 * 110.23117 * 0.40154 * 4 3 2 7 7 C 1.31808 * 110.07615 * 359.75533 * 6 4 3 8 8 C 1.47707 * 126.52042 * 180.02562 * 7 6 4 9 9 O 1.21574 * 120.00101 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00220 * 359.95109 * 8 7 6 11 11 C 1.46493 * 120.00125 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47288 * 180.02562 * 11 10 8 13 13 C 1.53045 * 109.46017 * 295.03160 * 12 11 10 14 14 C 1.53193 * 109.31343 * 178.59959 * 13 12 11 15 15 N 1.46930 * 108.76443 * 54.64918 * 14 13 12 16 16 C 1.36936 * 120.62473 * 126.36629 * 15 14 13 17 17 H 1.08005 * 120.00007 * 331.85744 * 16 15 14 18 18 C 1.38812 * 120.00285 * 151.86507 * 16 15 14 19 19 N 1.31623 * 119.99528 * 343.05816 * 18 16 15 20 20 Si 1.86800 * 120.00564 * 163.05746 * 18 16 15 21 21 H 1.48504 * 109.46727 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47007 * 120.00108 * 20 18 16 23 23 H 1.48498 * 109.47052 * 240.00192 * 20 18 16 24 24 C 1.46916 * 118.74265 * 306.38750 * 15 14 13 25 25 C 1.53041 * 109.46267 * 174.97470 * 12 11 10 26 26 H 1.09001 * 109.46879 * 269.67456 * 1 2 3 27 27 H 1.09000 * 109.47295 * 149.67877 * 1 2 3 28 28 H 1.09003 * 109.47300 * 29.67392 * 1 2 3 29 29 H 1.08001 * 126.38143 * 359.97438 * 3 2 1 30 30 H 0.96998 * 119.99543 * 0.02562 * 10 8 7 31 31 H 1.08997 * 109.47365 * 299.99982 * 11 10 8 32 32 H 1.09007 * 109.47356 * 60.00536 * 11 10 8 33 33 H 1.09001 * 109.46169 * 55.00044 * 12 11 10 34 34 H 1.09000 * 109.49609 * 298.55913 * 13 12 11 35 35 H 1.08995 * 109.49482 * 58.65713 * 13 12 11 36 36 H 1.09000 * 109.59722 * 294.86713 * 14 13 12 37 37 H 1.08994 * 109.70625 * 174.50744 * 14 13 12 38 38 H 0.96997 * 119.99699 * 179.97438 * 19 18 16 39 39 H 1.09009 * 109.58670 * 293.82112 * 24 15 14 40 40 H 1.09001 * 109.70545 * 173.46689 * 24 15 14 41 41 H 1.08997 * 109.49451 * 301.33268 * 25 12 11 42 42 H 1.08991 * 109.49804 * 61.40533 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0776 0.0000 4 7 3.5951 0.6153 0.0026 5 1 4.3886 1.1730 0.0053 6 7 3.5998 -0.6693 -0.0043 7 6 2.3635 -1.1263 -0.0064 8 6 1.9506 -2.5445 -0.0134 9 8 0.7698 -2.8339 -0.0142 10 7 2.8829 -3.5178 -0.0193 11 6 2.4733 -4.9243 -0.0268 12 6 3.7157 -5.8173 -0.0318 13 6 4.4859 -5.6120 -1.3383 14 6 5.7472 -6.4813 -1.3249 15 7 5.3585 -7.8744 -1.0661 16 6 5.7525 -8.8771 -1.9114 17 1 5.9359 -8.6635 -2.9542 18 6 5.9162 -10.1680 -1.4283 19 7 6.0237 -10.3772 -0.1332 20 14 5.9840 -11.6084 -2.6158 21 1 5.8413 -11.1097 -4.0073 22 1 7.2862 -12.3075 -2.4721 23 1 4.8790 -12.5527 -2.3121 24 6 4.5386 -8.1711 0.1163 25 6 3.2909 -7.2827 0.0868 26 1 -0.3633 -0.0058 1.0277 27 1 -0.3634 -0.8871 -0.5188 28 1 -0.3634 0.8929 -0.5088 29 1 2.0220 2.1138 -0.0004 30 1 3.8250 -3.2870 -0.0186 31 1 1.8790 -5.1345 0.8624 32 1 1.8779 -5.1247 -0.9176 33 1 4.3548 -5.5551 0.8114 34 1 3.8559 -5.8979 -2.1807 35 1 4.7678 -4.5635 -1.4335 36 1 6.4197 -6.1376 -0.5388 37 1 6.2494 -6.4152 -2.2900 38 1 6.1377 -11.2794 0.2045 39 1 5.1125 -7.9652 1.0199 40 1 4.2410 -9.2196 0.1035 41 1 2.7224 -7.4234 1.0061 42 1 2.6719 -7.5525 -0.7687 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619670561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:33 Heat of formation + Delta-G solvation = 21.769403 kcal Electronic energy + Delta-G solvation = -23103.625739 eV Core-core repulsion = 19698.280611 eV Total energy + Delta-G solvation = -3405.345128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.60690 -40.60476 -39.27736 -36.43058 -34.53963 -33.95821 -32.79836 -32.02133 -31.35084 -28.61546 -27.94105 -26.12979 -24.62407 -23.75761 -22.59065 -21.52323 -21.20177 -20.58338 -19.11181 -18.70467 -17.98806 -16.96972 -16.91749 -16.71097 -16.01031 -15.69683 -15.30475 -15.21247 -14.92521 -14.67071 -14.40745 -14.01036 -13.96811 -13.82790 -13.75481 -13.41565 -13.02469 -13.00878 -12.80261 -12.58889 -12.24379 -11.98863 -11.85705 -11.81557 -11.63141 -11.31394 -11.11671 -11.01241 -10.53752 -10.47368 -10.05454 -9.75828 -8.66748 -7.86925 -5.32091 0.53306 1.20370 1.45730 1.47810 1.58260 1.94373 2.33276 2.36058 2.51617 3.27462 3.44905 3.71044 3.82793 3.93032 3.97022 4.08247 4.21510 4.50922 4.52870 4.54127 4.59862 4.68431 4.73919 4.81333 4.93556 4.94226 5.01157 5.06106 5.13784 5.22492 5.28221 5.29030 5.36491 5.44278 5.55331 5.57201 5.66465 5.79249 6.17552 6.40461 6.48089 6.90189 7.16174 7.17306 7.88052 8.39303 9.19455 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037373 B = 0.002843 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.027357 B = 9847.434084 C =10178.774397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.177 4.177 3 C 0.007 3.993 4 N -0.363 5.363 5 H 0.465 0.535 6 N -0.273 5.273 7 C -0.044 4.044 8 C 0.595 3.405 9 O -0.566 6.566 10 N -0.706 5.706 11 C 0.136 3.864 12 C -0.078 4.078 13 C -0.114 4.114 14 C 0.141 3.859 15 N -0.612 5.612 16 C -0.261 4.261 17 H 0.064 0.936 18 C -0.052 4.052 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.290 1.290 24 C 0.178 3.822 25 C -0.121 4.121 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.231 0.769 30 H 0.413 0.587 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.016 0.984 37 H 0.051 0.949 38 H 0.250 0.750 39 H -0.002 1.002 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.087 26.257 1.282 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.187 4.187 3 C -0.138 4.138 4 N -0.080 5.080 5 H 0.313 0.687 6 N -0.111 5.111 7 C -0.203 4.203 8 C 0.381 3.619 9 O -0.444 6.444 10 N -0.357 5.357 11 C 0.013 3.987 12 C -0.097 4.097 13 C -0.153 4.153 14 C 0.016 3.984 15 N -0.336 5.336 16 C -0.392 4.392 17 H 0.082 0.918 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.794 3.206 21 H -0.192 1.192 22 H -0.219 1.219 23 H -0.216 1.216 24 C 0.052 3.948 25 C -0.161 4.161 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.248 0.752 30 H 0.249 0.751 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.016 0.984 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.796 25.503 1.338 26.427 hybrid contribution 0.382 -0.730 -0.320 0.883 sum -6.414 24.773 1.019 25.610 Atomic orbital electron populations 1.20133 0.87820 1.03029 1.02377 1.20730 0.98339 0.90853 1.08807 1.23316 0.83044 1.01709 1.05701 1.43368 1.09851 1.03553 1.51201 0.68655 1.73471 1.22531 0.95659 1.19479 1.21797 0.90793 0.94651 1.13099 1.17237 0.85115 0.83672 0.75855 1.90741 1.18107 1.83448 1.52132 1.45865 1.10305 1.05886 1.73638 1.21355 0.96602 0.78886 1.01900 1.21146 0.95501 0.94395 0.98669 1.21915 0.97242 0.99312 0.96829 1.21050 0.94667 0.84440 0.98279 1.44342 1.58431 1.02658 1.28155 1.19539 1.39880 0.89054 0.90695 0.91796 1.25792 1.00700 1.00990 0.97224 1.70189 1.54481 1.20346 1.13106 0.85230 0.76780 0.79512 0.79073 1.19197 1.21863 1.21647 1.20566 0.89205 0.97721 0.87296 1.21978 0.98393 0.94456 1.01262 0.91490 0.92768 0.89179 0.75220 0.75079 0.91412 0.92046 0.90771 0.92931 0.90396 0.96556 0.93019 0.94122 0.98427 0.92913 0.91066 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 9.93 71.24 0.71 -0.62 16 2 C -0.18 -3.37 6.25 -19.72 -0.12 -3.50 16 3 C 0.01 0.07 11.97 83.54 1.00 1.07 16 4 N -0.36 -4.05 6.83 -57.51 -0.39 -4.44 16 5 H 0.46 1.28 8.96 -220.00 -1.97 -0.70 16 6 N -0.27 -5.51 11.92 -48.18 -0.57 -6.09 16 7 C -0.04 -1.08 7.13 42.46 0.30 -0.78 16 8 C 0.60 17.55 7.82 86.75 0.68 18.23 16 9 O -0.57 -19.78 15.12 -3.95 -0.06 -19.84 16 10 N -0.71 -18.96 5.27 -466.11 -2.46 -21.42 16 11 C 0.14 3.92 5.06 86.38 0.44 4.35 16 12 C -0.08 -2.47 2.19 -10.76 -0.02 -2.50 16 13 C -0.11 -3.76 5.25 30.67 0.16 -3.60 16 14 C 0.14 5.84 6.52 86.36 0.56 6.40 16 15 N -0.61 -31.19 2.99 -699.10 -2.09 -33.28 16 16 C -0.26 -14.65 9.58 84.03 0.81 -13.85 16 17 H 0.06 3.51 7.89 -2.91 -0.02 3.49 16 18 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 19 N -0.93 -56.08 11.19 21.65 0.24 -55.84 16 20 Si 0.97 45.61 29.59 68.60 2.03 47.64 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 C 0.18 8.66 5.30 86.37 0.46 9.12 16 25 C -0.12 -4.55 5.36 30.67 0.16 -4.38 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.27 6.72 -2.39 -0.02 1.26 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.23 0.00 8.06 -2.91 -0.02 -0.02 16 30 H 0.41 9.96 7.37 -92.71 -0.68 9.27 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 2.12 7.15 -2.39 -0.02 2.11 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 38 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 40 H 0.05 2.93 6.06 -2.39 -0.01 2.91 16 41 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -74.74 341.38 0.63 -74.11 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -1.61 Total: 11.74 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.55 Total: 7.43 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -5.27 Total: -121.08 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.06 Total: -19.84 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -74.74 0.63 -74.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619670561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.881 kcal (2) G-P(sol) polarization free energy of solvation -74.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds