Wall clock time and date at job start Tue Mar 31 2020 03:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99708 * 2 1 4 4 H 1.48504 * 109.46951 * 270.00126 * 3 2 1 5 5 H 1.48494 * 109.47315 * 29.99540 * 3 2 1 6 6 H 1.48497 * 109.47249 * 149.99980 * 3 2 1 7 7 C 1.37872 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00407 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99844 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47162 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99901 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00005 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99710 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.46866 * 179.97438 * 13 11 10 15 15 C 1.46841 * 111.00103 * 169.99591 * 14 13 11 16 16 C 1.53040 * 109.52536 * 185.83866 * 15 14 13 17 17 C 1.53110 * 109.27866 * 300.82255 * 16 15 14 18 18 N 1.46502 * 109.52189 * 177.55628 * 17 16 15 19 19 C 1.34948 * 126.03993 * 274.99612 * 18 17 16 20 20 C 1.35315 * 107.74520 * 179.97438 * 19 18 17 21 21 C 1.39870 * 107.92205 * 0.02562 * 20 19 18 22 22 N 1.30839 * 108.19862 * 359.97438 * 21 20 19 23 23 C 1.53124 * 109.16313 * 57.65523 * 17 16 15 24 24 C 1.46847 * 111.00010 * 294.20838 * 14 13 11 25 25 H 0.96995 * 120.00235 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47181 * 59.99746 * 9 7 2 27 27 H 1.08998 * 109.46628 * 300.00338 * 9 7 2 28 28 H 0.97001 * 120.00021 * 359.97438 * 10 9 7 29 29 H 1.08998 * 109.47559 * 59.99257 * 13 11 10 30 30 H 1.08997 * 109.47134 * 299.98707 * 13 11 10 31 31 H 1.09006 * 109.46244 * 65.82499 * 15 14 13 32 32 H 1.09004 * 109.45520 * 305.85358 * 15 14 13 33 33 H 1.09001 * 109.50028 * 180.87682 * 16 15 14 34 34 H 1.09004 * 109.53152 * 60.78227 * 16 15 14 35 35 H 1.08998 * 109.52583 * 297.68741 * 17 16 15 36 36 H 1.08007 * 126.12251 * 0.27272 * 19 18 17 37 37 H 1.08001 * 126.03475 * 179.97438 * 20 19 18 38 38 H 1.07997 * 125.89658 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.50328 * 62.27887 * 23 17 16 40 40 H 1.09000 * 109.50682 * 182.40762 * 23 17 16 41 41 H 1.08994 * 109.46018 * 294.17392 * 24 14 13 42 42 H 1.09001 * 109.46389 * 54.15370 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5117 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3251 -2.8214 0.0020 12 8 6.1132 -1.8995 0.0025 13 6 5.8274 -4.2422 0.0013 14 7 7.2965 -4.2421 0.0020 15 6 7.8227 -5.5923 0.2395 16 6 9.3455 -5.5307 0.3783 17 6 9.9467 -4.9464 -0.9029 18 7 11.3995 -4.8307 -0.7534 19 6 12.0596 -3.8006 -0.1840 20 6 13.3831 -4.0760 -0.2425 21 6 13.5372 -5.3166 -0.8698 22 7 12.3488 -5.7700 -1.1763 23 6 9.3462 -3.5603 -1.1533 24 6 7.8233 -3.6791 -1.2478 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.3697 -3.3125 0.0010 29 1 5.4648 -4.7554 -0.8893 30 1 5.4635 -4.7567 0.8906 31 1 7.5603 -6.2371 -0.5994 32 1 7.3904 -5.9945 1.1557 33 1 9.7372 -6.5351 0.5391 34 1 9.6089 -4.8974 1.2256 35 1 9.7180 -5.6008 -1.7440 36 1 11.6113 -2.9171 0.2462 37 1 14.1797 -3.4482 0.1287 38 1 14.4752 -5.8142 -1.0670 39 1 9.6089 -2.8958 -0.3302 40 1 9.7383 -3.1570 -2.0869 41 1 7.5610 -4.3328 -2.0795 42 1 7.3916 -2.6917 -1.4117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731353744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:03 Heat of formation + Delta-G solvation = 49.020942 kcal Electronic energy + Delta-G solvation = -22930.638541 eV Core-core repulsion = 19526.475128 eV Total energy + Delta-G solvation = -3404.163413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43309 -39.70982 -38.21939 -34.74131 -34.21233 -32.40544 -31.24092 -30.81811 -30.13065 -28.54375 -26.55239 -23.86643 -23.56180 -21.98336 -21.40086 -20.97599 -19.91717 -19.61033 -17.62291 -17.32883 -16.19704 -16.07228 -15.51271 -15.22339 -14.95654 -14.84864 -14.56243 -14.38586 -13.86260 -13.66353 -13.47958 -13.37465 -12.90033 -12.82886 -12.66978 -12.43824 -12.15016 -11.74370 -11.57763 -11.50885 -11.12595 -11.06229 -10.94138 -10.80867 -10.68762 -10.00254 -9.57139 -9.53695 -9.23981 -8.81364 -8.76217 -8.43111 -8.17010 -6.24964 -4.27548 1.74388 2.28235 2.68575 3.16307 3.23995 3.30496 3.38918 3.44404 4.11030 4.16832 4.30125 4.41240 4.62510 4.69054 4.75858 4.86224 5.00756 5.02752 5.10120 5.17689 5.26455 5.29457 5.36069 5.43482 5.45322 5.53065 5.57627 5.64848 5.76583 5.84569 5.91152 5.99903 6.48187 6.69944 6.83071 6.86427 6.92814 7.03136 7.18547 7.35266 7.55087 8.09892 8.47048 8.71559 8.89365 9.35005 10.86938 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.035196 B = 0.002726 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.348180 B =10267.280028 C =10847.713324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.707 5.707 11 C 0.501 3.499 12 O -0.542 6.542 13 C 0.036 3.964 14 N -0.521 5.521 15 C 0.059 3.941 16 C -0.123 4.123 17 C 0.160 3.840 18 N -0.363 5.363 19 C 0.060 3.940 20 C -0.281 4.281 21 C 0.040 3.960 22 N -0.303 5.303 23 C -0.121 4.121 24 C 0.055 3.945 25 H 0.268 0.732 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.396 0.604 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.173 0.827 37 H 0.145 0.855 38 H 0.180 0.820 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.306 -11.983 -0.874 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.356 5.356 11 C 0.285 3.715 12 O -0.420 6.420 13 C -0.095 4.095 14 N -0.246 5.246 15 C -0.069 4.069 16 C -0.162 4.162 17 C 0.058 3.942 18 N -0.145 5.145 19 C -0.086 4.086 20 C -0.311 4.311 21 C -0.146 4.146 22 N -0.124 5.124 23 C -0.160 4.160 24 C -0.074 4.074 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.229 0.771 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.190 0.810 37 H 0.163 0.837 38 H 0.197 0.803 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 21.037 -11.854 -1.042 24.169 hybrid contribution 0.179 0.690 -0.235 0.750 sum 21.216 -11.164 -1.277 24.008 Atomic orbital electron populations 1.69880 1.06221 1.27465 1.49360 1.24808 0.94801 0.99213 0.93857 0.86807 0.80587 0.83211 0.79021 1.19883 1.20894 1.18473 1.21092 0.88543 0.95211 1.53389 0.90272 1.19473 0.95197 0.78591 0.96735 1.46183 1.05644 1.11088 1.72692 1.20332 0.83095 0.90563 0.77532 1.90616 1.55247 1.46025 1.50127 1.21981 0.88402 0.96035 1.03071 1.61563 1.06069 1.20908 1.36059 1.22071 0.94048 0.89303 1.01511 1.21997 0.94950 1.01910 0.97340 1.21458 0.73810 0.99292 0.99657 1.48920 1.06222 1.14505 1.44822 1.22579 0.93094 0.94323 0.98645 1.21505 0.95881 1.00390 1.13280 1.23853 0.96389 0.95544 0.98779 1.77334 0.97747 1.14519 1.22772 1.21954 0.95724 0.94884 1.03425 1.22234 0.93434 1.02510 0.89173 0.92237 0.95676 0.96252 0.77064 0.92020 0.87900 0.94394 0.89697 0.90613 0.90167 0.88409 0.81002 0.83712 0.80288 0.89705 0.90553 0.94998 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.86 16 7 C -0.54 -14.61 9.83 -34.44 -0.34 -14.95 16 8 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 9 C 0.22 5.29 4.50 -5.19 -0.02 5.27 16 10 N -0.71 -13.50 5.55 -61.47 -0.34 -13.84 16 11 C 0.50 8.79 7.50 -10.99 -0.08 8.71 16 12 O -0.54 -11.41 14.33 5.55 0.08 -11.33 16 13 C 0.04 0.45 5.45 -4.97 -0.03 0.42 16 14 N -0.52 -6.23 4.40 -236.11 -1.04 -7.27 16 15 C 0.06 0.54 5.46 -3.84 -0.02 0.52 16 16 C -0.12 -1.13 5.70 -26.65 -0.15 -1.28 16 17 C 0.16 1.57 3.27 -67.81 -0.22 1.35 16 18 N -0.36 -3.99 3.53 -54.74 -0.19 -4.19 16 19 C 0.06 0.59 10.59 -17.22 -0.18 0.41 16 20 C -0.28 -2.63 10.80 -40.01 -0.43 -3.06 16 21 C 0.04 0.40 12.03 -17.36 -0.21 0.19 16 22 N -0.30 -3.68 12.57 30.62 0.39 -3.30 16 23 C -0.12 -1.24 5.07 -26.64 -0.13 -1.37 16 24 C 0.05 0.65 5.11 -3.83 -0.02 0.63 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 27 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 28 H 0.40 6.58 8.32 -40.82 -0.34 6.24 16 29 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.10 1.07 7.99 -51.93 -0.41 0.66 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.69 8.02 -51.93 -0.42 0.28 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.17 1.36 7.20 -52.48 -0.38 0.98 16 37 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.08 0.92 7.04 -51.93 -0.37 0.55 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.11 1.62 5.78 -51.93 -0.30 1.32 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -32.81 341.68 -8.16 -40.97 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.36 Total: 3.86 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.94 Total: -1.12 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.41 Total: -53.98 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.81 -8.16 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731353744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.992 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds