Wall clock time and date at job start Tue Mar 31 2020 03:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99708 * 2 1 4 4 H 1.48504 * 109.46951 * 270.00126 * 3 2 1 5 5 H 1.48494 * 109.47315 * 29.99540 * 3 2 1 6 6 H 1.48497 * 109.47249 * 149.99980 * 3 2 1 7 7 C 1.37872 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00407 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99844 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47162 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99901 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00005 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99710 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.46866 * 179.97438 * 13 11 10 15 15 C 1.46841 * 111.00103 * 169.99591 * 14 13 11 16 16 C 1.53040 * 109.52536 * 185.83866 * 15 14 13 17 17 C 1.53110 * 109.27866 * 300.82255 * 16 15 14 18 18 N 1.46502 * 109.52189 * 177.55628 * 17 16 15 19 19 C 1.34948 * 126.03993 * 274.99612 * 18 17 16 20 20 C 1.35315 * 107.74520 * 179.97438 * 19 18 17 21 21 C 1.39870 * 107.92205 * 0.02562 * 20 19 18 22 22 N 1.30839 * 108.19862 * 359.97438 * 21 20 19 23 23 C 1.53124 * 109.16313 * 57.65523 * 17 16 15 24 24 C 1.46847 * 111.00010 * 294.20838 * 14 13 11 25 25 H 0.96995 * 120.00235 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47181 * 59.99746 * 9 7 2 27 27 H 1.08998 * 109.46628 * 300.00338 * 9 7 2 28 28 H 0.97001 * 120.00021 * 359.97438 * 10 9 7 29 29 H 1.08998 * 109.47559 * 59.99257 * 13 11 10 30 30 H 1.08997 * 109.47134 * 299.98707 * 13 11 10 31 31 H 1.09006 * 109.46244 * 65.82499 * 15 14 13 32 32 H 1.09004 * 109.45520 * 305.85358 * 15 14 13 33 33 H 1.09001 * 109.50028 * 180.87682 * 16 15 14 34 34 H 1.09004 * 109.53152 * 60.78227 * 16 15 14 35 35 H 1.08998 * 109.52583 * 297.68741 * 17 16 15 36 36 H 1.08007 * 126.12251 * 0.27272 * 19 18 17 37 37 H 1.08001 * 126.03475 * 179.97438 * 20 19 18 38 38 H 1.07997 * 125.89658 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.50328 * 62.27887 * 23 17 16 40 40 H 1.09000 * 109.50682 * 182.40762 * 23 17 16 41 41 H 1.08994 * 109.46018 * 294.17392 * 24 14 13 42 42 H 1.09001 * 109.46389 * 54.15370 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5117 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3251 -2.8214 0.0020 12 8 6.1132 -1.8995 0.0025 13 6 5.8274 -4.2422 0.0013 14 7 7.2965 -4.2421 0.0020 15 6 7.8227 -5.5923 0.2395 16 6 9.3455 -5.5307 0.3783 17 6 9.9467 -4.9464 -0.9029 18 7 11.3995 -4.8307 -0.7534 19 6 12.0596 -3.8006 -0.1840 20 6 13.3831 -4.0760 -0.2425 21 6 13.5372 -5.3166 -0.8698 22 7 12.3488 -5.7700 -1.1763 23 6 9.3462 -3.5603 -1.1533 24 6 7.8233 -3.6791 -1.2478 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.3697 -3.3125 0.0010 29 1 5.4648 -4.7554 -0.8893 30 1 5.4635 -4.7567 0.8906 31 1 7.5603 -6.2371 -0.5994 32 1 7.3904 -5.9945 1.1557 33 1 9.7372 -6.5351 0.5391 34 1 9.6089 -4.8974 1.2256 35 1 9.7180 -5.6008 -1.7440 36 1 11.6113 -2.9171 0.2462 37 1 14.1797 -3.4482 0.1287 38 1 14.4752 -5.8142 -1.0670 39 1 9.6089 -2.8958 -0.3302 40 1 9.7383 -3.1570 -2.0869 41 1 7.5610 -4.3328 -2.0795 42 1 7.3916 -2.6917 -1.4117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731353744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:03 Heat of formation + Delta-G solvation = 24.922587 kcal Electronic energy + Delta-G solvation = -22931.683524 eV Core-core repulsion = 19526.475128 eV Total energy + Delta-G solvation = -3405.208396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.18418 -40.88399 -39.34497 -36.16903 -35.42408 -34.38633 -32.03237 -31.73904 -30.90423 -30.16748 -27.77671 -24.90731 -24.36470 -23.68517 -22.19097 -21.76915 -21.40672 -20.38908 -19.12587 -18.38388 -17.68693 -17.32821 -16.63085 -16.42153 -16.07389 -15.80508 -15.74241 -15.53460 -15.20192 -14.63827 -14.50766 -14.38773 -14.24758 -14.12358 -13.92274 -13.53797 -13.18773 -13.00815 -12.88601 -12.64197 -12.43308 -12.28387 -11.93688 -11.89367 -11.77400 -11.64568 -11.53766 -10.91295 -10.65773 -10.34876 -9.87588 -9.50243 -9.29712 -8.39660 -6.46384 0.98979 1.32658 1.35420 1.47600 1.55010 1.79118 1.97149 2.27455 2.30821 2.95845 2.99288 3.39588 3.65681 3.85176 3.92937 3.95389 4.08567 4.12554 4.24529 4.27325 4.36163 4.45705 4.54423 4.59120 4.72530 4.79626 4.81167 4.85348 4.90755 4.97632 5.00756 5.05379 5.17409 5.18613 5.28012 5.57004 5.79078 5.87844 6.08400 6.11666 6.13919 6.55408 6.79983 6.90893 7.17141 7.48114 8.74992 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.035196 B = 0.002726 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.348180 B =10267.280028 C =10847.713324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.235 3.765 10 N -0.709 5.709 11 C 0.498 3.502 12 O -0.578 6.578 13 C 0.048 3.952 14 N -0.539 5.539 15 C 0.063 3.937 16 C -0.115 4.115 17 C 0.163 3.837 18 N -0.372 5.372 19 C 0.050 3.950 20 C -0.285 4.285 21 C 0.037 3.963 22 N -0.338 5.338 23 C -0.111 4.111 24 C 0.058 3.942 25 H 0.272 0.728 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.408 0.592 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.186 0.814 37 H 0.166 0.834 38 H 0.207 0.793 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.909 -12.930 -0.746 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.176 4.176 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.111 3.889 10 N -0.359 5.359 11 C 0.285 3.715 12 O -0.459 6.459 13 C -0.083 4.083 14 N -0.264 5.264 15 C -0.065 4.065 16 C -0.154 4.154 17 C 0.062 3.938 18 N -0.154 5.154 19 C -0.097 4.097 20 C -0.315 4.315 21 C -0.148 4.148 22 N -0.160 5.160 23 C -0.150 4.150 24 C -0.071 4.071 25 H 0.081 0.919 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.244 0.756 29 H 0.105 0.895 30 H 0.148 0.852 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.203 0.797 37 H 0.183 0.817 38 H 0.223 0.777 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 22.649 -12.841 -0.914 26.052 hybrid contribution -0.272 0.933 -0.272 1.009 sum 22.377 -11.908 -1.185 25.376 Atomic orbital electron populations 1.69985 1.07692 1.28565 1.50835 1.25617 0.95540 1.02713 0.93697 0.85850 0.79254 0.79355 0.79375 1.19062 1.19998 1.18429 1.21319 0.90102 0.94522 1.52378 0.92209 1.19032 0.93153 0.81281 0.95479 1.46033 1.06911 1.09549 1.73436 1.21276 0.81853 0.92657 0.75666 1.90606 1.55946 1.47932 1.51370 1.21934 0.88789 0.92041 1.05517 1.61510 1.05829 1.22902 1.36178 1.22121 0.93654 0.87843 1.02840 1.21918 0.95110 1.01828 0.96512 1.21415 0.73636 0.98745 1.00044 1.49005 1.06417 1.14734 1.45254 1.22959 0.93607 0.94578 0.98541 1.21846 0.96269 1.00472 1.12869 1.24397 0.96805 0.95774 0.97860 1.77285 0.98717 1.15705 1.24252 1.21819 0.94832 0.95189 1.03142 1.22098 0.94062 1.01035 0.89861 0.91909 0.97165 0.97217 0.75607 0.89462 0.85235 0.92831 0.88195 0.90090 0.91174 0.88359 0.79679 0.81670 0.77670 0.90565 0.90445 0.93662 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.96 21.45 0.30 -54.87 16 2 C 0.02 1.37 5.47 84.65 0.46 1.83 16 3 Si 0.94 43.64 27.47 68.60 1.88 45.52 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.26 -11.99 6.54 99.48 0.65 -11.34 16 7 C -0.55 -29.53 9.83 25.60 0.25 -29.27 16 8 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 9 C 0.23 11.17 4.50 85.64 0.39 11.56 16 10 N -0.71 -26.57 5.55 -466.78 -2.59 -29.16 16 11 C 0.50 16.97 7.50 87.66 0.66 17.63 16 12 O -0.58 -24.28 14.33 -3.05 -0.04 -24.33 16 13 C 0.05 1.05 5.45 85.56 0.47 1.51 16 14 N -0.54 -11.74 4.40 -900.91 -3.96 -15.70 16 15 C 0.06 0.96 5.46 86.33 0.47 1.43 16 16 C -0.11 -1.89 5.70 30.64 0.17 -1.71 16 17 C 0.16 2.99 3.27 45.07 0.15 3.13 16 18 N -0.37 -7.78 3.53 -327.11 -1.16 -8.93 16 19 C 0.05 0.92 10.59 83.54 0.88 1.80 16 20 C -0.29 -4.85 10.80 21.99 0.24 -4.61 16 21 C 0.04 0.67 12.03 85.24 1.03 1.70 16 22 N -0.34 -7.83 12.57 -57.02 -0.72 -8.55 16 23 C -0.11 -2.18 5.07 30.65 0.16 -2.02 16 24 C 0.06 1.30 5.11 86.33 0.44 1.74 16 25 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 26 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 27 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 28 H 0.41 13.15 8.32 -92.71 -0.77 12.38 16 29 H 0.09 1.53 8.12 -2.39 -0.02 1.51 16 30 H 0.13 2.21 7.99 -2.39 -0.02 2.19 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.10 1.26 8.02 -2.39 -0.02 1.24 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.19 2.74 7.20 -2.91 -0.02 2.71 16 37 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 38 H 0.21 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.08 1.62 7.04 -2.39 -0.02 1.60 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 2.25 5.78 -2.39 -0.01 2.23 16 Total: -1.00 -71.17 341.68 -0.33 -71.50 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.19 Total: 19.79 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 5.76 Total: 4.73 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -8.12 Total: -117.21 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.04 Total: -24.33 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Total: -71.17 -0.33 -71.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731353744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.422 kcal (2) G-P(sol) polarization free energy of solvation -71.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds