Wall clock time and date at job start Tue Mar 31 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99809 * 2 1 4 4 H 1.48498 * 109.47284 * 270.00318 * 3 2 1 5 5 H 1.48502 * 109.47041 * 30.00816 * 3 2 1 6 6 H 1.48502 * 109.46936 * 150.00638 * 3 2 1 7 7 C 1.37874 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00160 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47367 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99797 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99972 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99898 * 180.27352 * 11 10 9 14 14 N 1.46894 * 109.47436 * 173.45699 * 13 11 10 15 15 C 1.46847 * 111.00301 * 169.40141 * 14 13 11 16 16 C 1.53039 * 109.52415 * 185.84283 * 15 14 13 17 17 C 1.53126 * 109.27449 * 300.81595 * 16 15 14 18 18 N 1.46501 * 109.52197 * 177.55726 * 17 16 15 19 19 C 1.36881 * 126.39423 * 120.31533 * 18 17 16 20 20 C 1.34670 * 106.81780 * 180.02562 * 19 18 17 21 21 N 1.34123 * 108.02127 * 0.02562 * 20 19 18 22 22 C 1.30504 * 109.25426 * 359.72321 * 21 20 19 23 23 C 1.53124 * 109.15864 * 57.65819 * 17 16 15 24 24 C 1.46847 * 111.00173 * 293.61382 * 14 13 11 25 25 H 0.96998 * 120.00087 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47039 * 59.99952 * 9 7 2 27 27 H 1.09005 * 109.46746 * 300.00433 * 9 7 2 28 28 H 0.97001 * 120.00008 * 359.97438 * 10 9 7 29 29 H 1.09006 * 109.47110 * 293.46059 * 13 11 10 30 30 H 1.08999 * 109.47358 * 53.45628 * 13 11 10 31 31 H 1.08996 * 109.45875 * 305.85218 * 15 14 13 32 32 H 1.08992 * 109.46460 * 65.82544 * 15 14 13 33 33 H 1.08994 * 109.50626 * 180.88030 * 16 15 14 34 34 H 1.08997 * 109.54011 * 60.77303 * 16 15 14 35 35 H 1.08995 * 109.52557 * 297.75041 * 17 16 15 36 36 H 1.07999 * 126.59465 * 359.97190 * 19 18 17 37 37 H 1.08003 * 125.98731 * 179.97438 * 20 19 18 38 38 H 1.08002 * 125.65083 * 180.29216 * 22 21 20 39 39 H 1.08997 * 109.50017 * 182.40007 * 23 17 16 40 40 H 1.08995 * 109.53699 * 62.30394 * 23 17 16 41 41 H 1.09012 * 109.46038 * 294.17527 * 24 14 13 42 42 H 1.09002 * 109.46256 * 54.14936 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5614 -5.1050 0.0009 13 6 2.7331 -6.0288 0.0062 14 7 2.0050 -7.2948 0.1634 15 6 2.8883 -8.4432 -0.0759 16 6 2.0674 -9.7345 -0.0476 17 6 1.3830 -9.8686 1.3157 18 7 0.5492 -11.0730 1.3285 19 6 0.6733 -12.1377 2.1798 20 6 -0.2887 -13.0186 1.8448 21 7 -0.9810 -12.5061 0.8168 22 6 -0.4882 -11.3384 0.5057 23 6 0.5068 -8.6371 1.5614 24 6 1.3729 -7.3777 1.4863 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 3.1568 -3.4354 -0.0009 29 1 3.2842 -6.0408 -0.9342 30 1 3.4309 -5.9058 0.8345 31 1 3.3653 -8.3376 -1.0502 32 1 3.6524 -8.4816 0.7002 33 1 2.7257 -10.5879 -0.2097 34 1 1.3117 -9.7034 -0.8325 35 1 2.1392 -9.9395 2.0975 36 1 1.4031 -12.2502 2.9679 37 1 -0.4703 -13.9713 2.3202 38 1 -0.8489 -10.6922 -0.2809 39 1 0.0503 -8.7065 2.5487 40 1 -0.2737 -8.5877 0.8022 41 1 2.1443 -7.4210 2.2553 42 1 0.7493 -6.4981 1.6466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731847404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:30 Heat of formation + Delta-G solvation = 28.746363 kcal Electronic energy + Delta-G solvation = -22893.696192 eV Core-core repulsion = 19488.653607 eV Total energy + Delta-G solvation = -3405.042585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.26718 -39.67900 -38.17406 -34.95022 -34.14625 -32.38646 -31.42040 -31.19331 -29.51465 -28.15680 -26.35307 -23.91903 -23.51917 -22.37501 -21.68604 -21.14163 -19.72285 -19.68481 -17.75399 -17.18309 -16.12949 -15.76496 -15.51970 -15.29132 -14.98445 -14.74866 -14.45694 -14.35945 -13.98180 -13.93046 -13.65361 -13.52236 -13.18555 -12.77053 -12.54482 -12.25131 -11.96544 -11.71982 -11.55583 -11.50609 -11.06448 -11.01784 -10.97494 -10.83659 -10.35269 -10.09938 -9.69708 -9.43983 -9.10871 -8.77315 -8.66176 -8.39124 -7.91582 -6.20555 -4.27804 1.91712 2.56205 3.05778 3.20974 3.27045 3.29182 3.31165 3.48348 4.11205 4.19497 4.33562 4.40726 4.51986 4.61054 4.67625 4.83570 4.98663 5.05078 5.14478 5.15783 5.25759 5.26678 5.35119 5.37018 5.47030 5.52155 5.53782 5.58848 5.71959 5.89000 5.99777 6.17070 6.59014 6.79094 6.93330 7.03809 7.27181 7.39246 7.47394 7.62720 7.93016 7.95291 8.58086 8.74439 9.06394 9.39116 10.89571 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.043369 B = 0.002510 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.467067 B =11152.186127 C =11485.045708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.497 3.503 12 O -0.537 6.537 13 C 0.036 3.964 14 N -0.520 5.520 15 C 0.060 3.940 16 C -0.122 4.122 17 C 0.133 3.867 18 N -0.451 5.451 19 C -0.061 4.061 20 C -0.034 4.034 21 N -0.500 5.500 22 C 0.188 3.812 23 C -0.121 4.121 24 C 0.057 3.943 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.389 0.611 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.202 0.798 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.031 0.969 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 -20.607 3.502 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.364 5.364 11 C 0.280 3.720 12 O -0.415 6.415 13 C -0.095 4.095 14 N -0.244 5.244 15 C -0.069 4.069 16 C -0.161 4.161 17 C 0.030 3.970 18 N -0.133 5.133 19 C -0.194 4.194 20 C -0.182 4.182 21 N -0.218 5.218 22 C -0.094 4.094 23 C -0.159 4.159 24 C -0.071 4.071 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.222 0.778 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.219 0.781 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.049 0.951 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.263 -20.886 2.769 21.980 hybrid contribution 2.296 1.475 1.037 2.920 sum 8.560 -19.411 3.806 21.553 Atomic orbital electron populations 1.69971 1.06107 1.27352 1.48786 1.24957 0.94919 0.99473 0.94688 0.86417 0.79591 0.82655 0.78251 1.20430 1.20988 1.19782 1.21220 0.93238 0.90474 1.53330 0.91933 1.19085 0.88250 0.81887 0.97701 1.46476 1.11101 1.06130 1.72704 1.20276 0.89577 0.84055 0.78043 1.90655 1.16545 1.84562 1.49745 1.22008 0.95267 0.89329 1.02888 1.61534 1.31746 1.00552 1.30611 1.22051 0.93568 0.89553 1.01726 1.21949 1.00323 0.97608 0.96185 1.21659 0.92693 0.82940 0.99723 1.45753 1.25597 1.15702 1.26215 1.22725 1.05623 0.90358 1.00709 1.22283 0.96423 1.01137 0.98366 1.70322 1.28179 1.08139 1.15127 1.24948 0.89667 0.95975 0.98840 1.21937 0.98669 0.92008 1.03287 1.22166 0.97480 0.99279 0.88198 0.92406 0.95523 0.95625 0.77829 0.88065 0.92421 0.89692 0.94599 0.90710 0.89763 0.88621 0.81260 0.81631 0.78108 0.90733 0.89629 0.95131 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -14.42 9.28 -34.44 -0.32 -14.74 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 10 N -0.71 -14.19 5.55 -61.47 -0.34 -14.53 16 11 C 0.50 9.16 7.36 -10.99 -0.08 9.08 16 12 O -0.54 -12.12 14.71 5.55 0.08 -12.04 16 13 C 0.04 0.46 5.45 -4.98 -0.03 0.43 16 14 N -0.52 -6.23 4.35 -236.12 -1.03 -7.25 16 15 C 0.06 0.50 5.46 -3.83 -0.02 0.48 16 16 C -0.12 -0.97 5.46 -26.65 -0.15 -1.11 16 17 C 0.13 1.10 2.93 -67.80 -0.20 0.90 16 18 N -0.45 -4.31 2.62 -111.32 -0.29 -4.61 16 19 C -0.06 -0.56 11.55 -16.56 -0.19 -0.75 16 20 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 21 N -0.50 -6.48 11.25 -14.66 -0.16 -6.64 16 22 C 0.19 2.08 11.46 -90.37 -1.04 1.05 16 23 C -0.12 -1.23 5.45 -26.65 -0.15 -1.37 16 24 C 0.06 0.68 5.12 -3.84 -0.02 0.66 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.39 6.52 8.32 -40.82 -0.34 6.18 16 29 H 0.10 1.08 7.98 -51.93 -0.41 0.66 16 30 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 31 H 0.08 0.65 8.01 -51.93 -0.42 0.23 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.75 7.88 -51.93 -0.41 0.34 16 35 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.99 7.88 -51.93 -0.41 0.58 16 41 H 0.03 0.32 8.14 -51.92 -0.42 -0.11 16 42 H 0.10 1.60 6.06 -51.93 -0.31 1.28 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -33.29 346.14 -9.82 -43.11 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.48 Total: 4.15 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.52 Total: 2.13 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -1.09 Total: -58.02 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.29 -9.82 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731847404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.854 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds