Wall clock time and date at job start Tue Mar 31 2020 03:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99809 * 2 1 4 4 H 1.48498 * 109.47284 * 270.00318 * 3 2 1 5 5 H 1.48502 * 109.47041 * 30.00816 * 3 2 1 6 6 H 1.48502 * 109.46936 * 150.00638 * 3 2 1 7 7 C 1.37874 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00160 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47367 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99797 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99972 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99898 * 180.27352 * 11 10 9 14 14 N 1.46894 * 109.47436 * 173.45699 * 13 11 10 15 15 C 1.46847 * 111.00301 * 169.40141 * 14 13 11 16 16 C 1.53039 * 109.52415 * 185.84283 * 15 14 13 17 17 C 1.53126 * 109.27449 * 300.81595 * 16 15 14 18 18 N 1.46501 * 109.52197 * 177.55726 * 17 16 15 19 19 C 1.36881 * 126.39423 * 120.31533 * 18 17 16 20 20 C 1.34670 * 106.81780 * 180.02562 * 19 18 17 21 21 N 1.34123 * 108.02127 * 0.02562 * 20 19 18 22 22 C 1.30504 * 109.25426 * 359.72321 * 21 20 19 23 23 C 1.53124 * 109.15864 * 57.65819 * 17 16 15 24 24 C 1.46847 * 111.00173 * 293.61382 * 14 13 11 25 25 H 0.96998 * 120.00087 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47039 * 59.99952 * 9 7 2 27 27 H 1.09005 * 109.46746 * 300.00433 * 9 7 2 28 28 H 0.97001 * 120.00008 * 359.97438 * 10 9 7 29 29 H 1.09006 * 109.47110 * 293.46059 * 13 11 10 30 30 H 1.08999 * 109.47358 * 53.45628 * 13 11 10 31 31 H 1.08996 * 109.45875 * 305.85218 * 15 14 13 32 32 H 1.08992 * 109.46460 * 65.82544 * 15 14 13 33 33 H 1.08994 * 109.50626 * 180.88030 * 16 15 14 34 34 H 1.08997 * 109.54011 * 60.77303 * 16 15 14 35 35 H 1.08995 * 109.52557 * 297.75041 * 17 16 15 36 36 H 1.07999 * 126.59465 * 359.97190 * 19 18 17 37 37 H 1.08003 * 125.98731 * 179.97438 * 20 19 18 38 38 H 1.08002 * 125.65083 * 180.29216 * 22 21 20 39 39 H 1.08997 * 109.50017 * 182.40007 * 23 17 16 40 40 H 1.08995 * 109.53699 * 62.30394 * 23 17 16 41 41 H 1.09012 * 109.46038 * 294.17527 * 24 14 13 42 42 H 1.09002 * 109.46256 * 54.14936 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5614 -5.1050 0.0009 13 6 2.7331 -6.0288 0.0062 14 7 2.0050 -7.2948 0.1634 15 6 2.8883 -8.4432 -0.0759 16 6 2.0674 -9.7345 -0.0476 17 6 1.3830 -9.8686 1.3157 18 7 0.5492 -11.0730 1.3285 19 6 0.6733 -12.1377 2.1798 20 6 -0.2887 -13.0186 1.8448 21 7 -0.9810 -12.5061 0.8168 22 6 -0.4882 -11.3384 0.5057 23 6 0.5068 -8.6371 1.5614 24 6 1.3729 -7.3777 1.4863 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 3.1568 -3.4354 -0.0009 29 1 3.2842 -6.0408 -0.9342 30 1 3.4309 -5.9058 0.8345 31 1 3.3653 -8.3376 -1.0502 32 1 3.6524 -8.4816 0.7002 33 1 2.7257 -10.5879 -0.2097 34 1 1.3117 -9.7034 -0.8325 35 1 2.1392 -9.9395 2.0975 36 1 1.4031 -12.2502 2.9679 37 1 -0.4703 -13.9713 2.3202 38 1 -0.8489 -10.6922 -0.2809 39 1 0.0503 -8.7065 2.5487 40 1 -0.2737 -8.5877 0.8022 41 1 2.1443 -7.4210 2.2553 42 1 0.7493 -6.4981 1.6466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731847404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:29 Heat of formation + Delta-G solvation = 5.283701 kcal Electronic energy + Delta-G solvation = -22894.713609 eV Core-core repulsion = 19488.653607 eV Total energy + Delta-G solvation = -3406.060002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.02816 -40.86443 -39.36754 -36.18199 -35.65908 -34.32795 -32.32039 -31.95250 -30.33253 -29.73249 -27.73300 -25.09415 -24.29335 -23.99972 -22.50144 -21.91381 -21.30029 -20.44630 -18.91444 -18.49715 -17.48607 -17.26363 -16.63916 -16.53011 -16.10038 -15.81795 -15.62287 -15.43786 -15.17405 -14.74554 -14.51614 -14.46584 -14.14572 -14.07710 -14.01795 -13.82742 -13.17393 -12.94606 -12.86506 -12.69061 -12.44325 -12.28407 -12.22486 -11.84800 -11.73790 -11.48015 -10.91601 -10.79776 -10.65770 -10.47263 -9.78043 -9.41272 -9.25776 -8.29140 -6.45690 1.16889 1.43115 1.45352 1.56429 1.84001 1.85168 2.24623 2.27930 2.46634 3.02829 3.05877 3.47413 3.66941 3.80787 3.87790 3.96942 4.03176 4.14924 4.22814 4.29945 4.39027 4.46949 4.52445 4.61393 4.65322 4.77149 4.77584 4.90532 4.95535 5.03898 5.12797 5.16795 5.25647 5.42840 5.50435 5.71365 5.85818 5.87138 5.94030 6.14289 6.28497 6.66419 6.98918 7.17288 7.24429 7.57631 8.82967 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.043369 B = 0.002510 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.467067 B =11152.186127 C =11485.045708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.711 5.711 11 C 0.491 3.509 12 O -0.586 6.586 13 C 0.052 3.948 14 N -0.544 5.544 15 C 0.063 3.937 16 C -0.117 4.117 17 C 0.141 3.859 18 N -0.448 5.448 19 C -0.048 4.048 20 C -0.061 4.061 21 N -0.538 5.538 22 C 0.172 3.828 23 C -0.114 4.114 24 C 0.062 3.938 25 H 0.268 0.732 26 H -0.016 1.016 27 H -0.015 1.015 28 H 0.408 0.592 29 H 0.130 0.870 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.122 0.878 36 H 0.205 0.795 37 H 0.182 0.818 38 H 0.207 0.793 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.156 -21.316 4.122 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.362 5.362 11 C 0.278 3.722 12 O -0.466 6.466 13 C -0.079 4.079 14 N -0.270 5.270 15 C -0.065 4.065 16 C -0.155 4.155 17 C 0.038 3.962 18 N -0.130 5.130 19 C -0.182 4.182 20 C -0.208 4.208 21 N -0.257 5.257 22 C -0.110 4.110 23 C -0.153 4.153 24 C -0.067 4.067 25 H 0.077 0.923 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.244 0.756 29 H 0.148 0.852 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.140 0.860 36 H 0.222 0.778 37 H 0.199 0.801 38 H 0.224 0.776 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.223 -21.635 3.387 24.167 hybrid contribution 1.011 1.618 0.854 2.090 sum 11.233 -20.017 4.241 23.342 Atomic orbital electron populations 1.70142 1.08313 1.28515 1.50108 1.26081 0.95760 1.03974 0.93960 0.85166 0.78525 0.77003 0.78577 1.19652 1.21134 1.17770 1.21637 0.94342 0.90593 1.52643 0.89694 1.18468 0.88687 0.84445 0.93813 1.46202 1.11108 1.05598 1.73320 1.21467 0.90127 0.84771 0.75822 1.90641 1.19338 1.85255 1.51358 1.21923 0.93487 0.86842 1.05626 1.61443 1.33330 1.01444 1.30751 1.22135 0.93325 0.87742 1.03268 1.21915 1.00147 0.98193 0.95277 1.21680 0.92276 0.81280 1.00947 1.45831 1.25216 1.16096 1.25835 1.23254 1.05252 0.89241 1.00407 1.22709 0.97137 1.02452 0.98501 1.70271 1.29582 1.09270 1.16577 1.25079 0.90446 0.95901 0.99581 1.21814 0.98294 0.92700 1.02461 1.21997 0.97607 0.97935 0.89137 0.92318 0.99815 0.99719 0.75629 0.85175 0.89267 0.88372 0.92144 0.88856 0.91377 0.86008 0.77808 0.80108 0.77648 0.90806 0.92022 0.92852 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 2 C 0.00 0.09 5.46 84.65 0.46 0.56 16 3 Si 0.98 41.68 29.54 68.60 2.03 43.71 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.55 -29.56 9.28 25.60 0.24 -29.33 16 8 H 0.09 4.05 7.60 -2.91 -0.02 4.02 16 9 C 0.27 14.49 5.43 85.64 0.46 14.96 16 10 N -0.71 -28.43 5.55 -466.78 -2.59 -31.02 16 11 C 0.49 18.24 7.36 87.66 0.65 18.89 16 12 O -0.59 -27.83 14.71 -3.04 -0.04 -27.88 16 13 C 0.05 1.17 5.45 85.56 0.47 1.63 16 14 N -0.54 -11.97 4.35 -900.95 -3.92 -15.88 16 15 C 0.06 0.82 5.46 86.33 0.47 1.29 16 16 C -0.12 -1.51 5.46 30.65 0.17 -1.34 16 17 C 0.14 1.97 2.93 45.07 0.13 2.10 16 18 N -0.45 -7.80 2.62 -506.11 -1.33 -9.13 16 19 C -0.05 -0.76 11.55 83.09 0.96 0.20 16 20 C -0.06 -1.24 11.87 83.52 0.99 -0.25 16 21 N -0.54 -14.00 11.25 -200.31 -2.25 -16.26 16 22 C 0.17 3.81 11.46 180.26 2.07 5.88 16 23 C -0.11 -2.26 5.45 30.65 0.17 -2.10 16 24 C 0.06 1.41 5.12 86.32 0.44 1.85 16 25 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 28 H 0.41 13.06 8.32 -92.71 -0.77 12.28 16 29 H 0.13 2.24 7.98 -2.38 -0.02 2.23 16 30 H 0.09 1.51 8.12 -2.39 -0.02 1.49 16 31 H 0.10 1.07 8.01 -2.39 -0.02 1.05 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 1.13 7.88 -2.39 -0.02 1.11 16 35 H 0.12 1.16 8.09 -2.39 -0.02 1.14 16 36 H 0.21 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 38 H 0.21 4.01 8.06 -2.91 -0.02 3.99 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.51 7.88 -2.39 -0.02 1.49 16 41 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.06 1.86 6.06 -2.39 -0.01 1.84 16 Total: -1.00 -77.74 346.14 0.09 -77.65 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.24 Total: 20.22 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 7.67 Total: 14.33 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -9.80 Total: -128.03 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.04 Total: -27.88 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -77.74 0.09 -77.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731847404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.931 kcal (2) G-P(sol) polarization free energy of solvation -77.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds