Wall clock time and date at job start Tue Mar 31 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 10 10 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 11 11 O 1.42901 * 109.46921 * 55.00135 * 10 8 7 12 12 N 1.46908 * 109.46701 * 204.99871 * 8 7 2 13 13 C 1.46905 * 110.99671 * 154.99873 * 12 8 7 14 14 C 1.50701 * 109.46838 * 179.97438 * 13 12 8 15 15 O 1.21282 * 120.00027 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00142 * 179.97438 * 14 13 12 17 17 C 1.46491 * 120.00225 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47331 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00095 * 0.02562 * 18 17 16 20 20 C 1.37886 * 120.00414 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99289 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00041 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47317 * 90.00109 * 22 20 18 24 24 H 1.48506 * 109.46789 * 210.00183 * 22 20 18 25 25 H 1.48502 * 109.47130 * 329.99667 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 29 29 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 30 30 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 31 31 H 1.08001 * 119.99773 * 180.02562 * 5 4 3 32 32 H 1.08000 * 120.00080 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47184 * 174.99667 * 10 8 7 34 34 H 1.08993 * 109.47400 * 294.99635 * 10 8 7 35 35 H 0.96696 * 113.99748 * 180.02562 * 11 10 8 36 36 H 1.00903 * 110.99760 * 278.95069 * 12 8 7 37 37 H 1.08994 * 109.47366 * 299.99732 * 13 12 8 38 38 H 1.08998 * 109.46974 * 60.00275 * 13 12 8 39 39 H 0.97005 * 119.99645 * 0.02562 * 16 14 13 40 40 H 1.09001 * 109.47388 * 300.00028 * 17 16 14 41 41 H 1.08996 * 109.47396 * 60.00379 * 17 16 14 42 42 H 0.97006 * 119.99353 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0016 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 1 0.5337 -2.3930 0.6002 10 6 1.0812 -2.8875 -1.4238 11 8 2.2652 -2.9167 -2.2234 12 7 2.2867 -3.5510 0.6021 13 6 1.4650 -4.6299 1.1668 14 6 2.3615 -5.6853 1.7615 15 8 3.5662 -5.5516 1.7195 16 7 1.8245 -6.7772 2.3409 17 6 2.6959 -7.8028 2.9195 18 6 1.8530 -8.9091 3.4998 19 1 0.7759 -8.8539 3.4430 20 6 2.4569 -9.9923 4.1025 21 7 3.7685 -10.0597 4.1712 22 14 1.4122 -11.3638 4.8211 23 1 1.1655 -12.3950 3.7814 24 1 2.1250 -11.9793 5.9694 25 1 0.1154 -10.8076 5.2842 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 0.0001 0.0024 32 1 4.1206 -2.1322 0.0029 33 1 0.6152 -3.8728 -1.4285 34 1 0.3852 -2.1546 -1.8317 35 1 2.1097 -3.1540 -3.1478 36 1 2.9423 -3.9121 -0.0746 37 1 0.8163 -4.2243 1.9431 38 1 0.8558 -5.0730 0.3790 39 1 0.8609 -6.8839 2.3748 40 1 3.3444 -8.2087 2.1431 41 1 3.3054 -7.3597 3.7070 42 1 4.1934 -10.8216 4.5956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782080705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:25 Heat of formation + Delta-G solvation = -64.859048 kcal Electronic energy + Delta-G solvation = -22821.592950 eV Core-core repulsion = 19380.198579 eV Total energy + Delta-G solvation = -3441.394371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98923 -38.76436 -37.38836 -35.19108 -34.11204 -33.00942 -32.32130 -31.32744 -28.74390 -27.45107 -26.95840 -25.38124 -23.40478 -22.38848 -21.34583 -20.37110 -19.65782 -17.89452 -17.26248 -16.39898 -15.95286 -15.82850 -15.41840 -15.10665 -15.00354 -14.72653 -14.39845 -14.20742 -13.83160 -13.59381 -13.11903 -13.04843 -12.67073 -12.58595 -12.48270 -12.22666 -12.05044 -11.89838 -11.75935 -11.46900 -10.98047 -10.90305 -10.88549 -10.85726 -10.31647 -10.23255 -9.39282 -9.04401 -8.73069 -8.68482 -8.61751 -8.33517 -7.85427 -6.16254 -4.23207 1.37732 1.49979 3.23875 3.29934 3.32404 3.40088 3.66493 3.85164 4.05170 4.32470 4.55797 4.59745 4.79068 4.88226 4.89223 5.06338 5.11697 5.16350 5.19702 5.22674 5.27857 5.40514 5.43034 5.52054 5.61620 5.63122 5.68672 5.80413 6.06973 6.16101 6.49162 6.60196 6.65401 6.98139 7.09094 7.32330 7.37431 7.43691 7.46979 7.53595 7.67929 7.97970 8.64478 8.79464 9.13223 9.43494 10.93986 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028820 B = 0.002743 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.310600 B =10206.170662 C =10435.674601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.090 4.090 3 C -0.128 4.128 4 C -0.123 4.123 5 C -0.131 4.131 6 C -0.070 4.070 7 C -0.060 4.060 8 C 0.126 3.874 9 H 0.101 0.899 10 C 0.048 3.952 11 O -0.561 6.561 12 N -0.661 5.661 13 C 0.038 3.962 14 C 0.497 3.503 15 O -0.541 6.541 16 N -0.715 5.715 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.378 0.622 36 H 0.361 0.639 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.389 0.611 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.645 20.165 -12.347 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.088 4.088 7 C -0.061 4.061 8 C 0.016 3.984 9 H 0.118 0.882 10 C -0.032 4.032 11 O -0.366 6.366 12 N -0.294 5.294 13 C -0.095 4.095 14 C 0.281 3.719 15 O -0.419 6.419 16 N -0.364 5.364 17 C 0.130 3.870 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.522 5.522 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.225 0.775 36 H 0.183 0.817 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.222 0.778 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.244 20.589 -11.109 24.491 hybrid contribution -1.552 -1.458 -0.861 2.297 sum -8.797 19.131 -11.970 24.221 Atomic orbital electron populations 1.20850 0.91778 1.02754 1.01944 1.19644 0.95587 0.92722 1.01093 1.20855 0.94252 0.96971 1.02527 1.21062 0.94273 0.97880 1.00858 1.21164 0.99848 0.92613 1.01274 1.20997 0.93664 0.98236 0.95919 1.19361 0.93979 0.92623 1.00134 1.20629 0.95935 0.90397 0.91431 0.88162 1.22872 0.87706 0.99660 0.92945 1.86521 1.32251 1.93151 1.24664 1.60182 1.17214 1.11893 1.40114 1.21908 0.95615 0.92315 0.99622 1.20301 0.89144 0.82777 0.79712 1.90672 1.15024 1.77701 1.58518 1.46435 1.10739 1.21448 1.57777 1.19082 0.89921 0.84447 0.93542 1.21229 0.93169 1.04798 1.38970 0.91941 1.24961 0.95071 0.98293 0.95743 1.69980 1.08476 1.30648 1.43136 0.86414 0.80079 0.81679 0.78722 1.20492 1.20988 1.19758 0.91482 0.91629 0.91472 0.86599 0.86621 0.86384 0.85281 0.93361 0.93147 0.77514 0.81684 0.88573 0.92976 0.77846 0.95628 0.95524 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.41 36.01 0.34 -0.57 16 2 C -0.09 -0.96 5.88 -104.62 -0.62 -1.58 16 3 C -0.13 -1.32 9.70 -39.58 -0.38 -1.71 16 4 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 5 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 6 C -0.07 -0.94 9.05 -39.58 -0.36 -1.30 16 7 C -0.06 -0.74 4.66 -104.63 -0.49 -1.22 16 8 C 0.13 1.40 2.13 -68.86 -0.15 1.26 16 9 H 0.10 0.97 5.82 -51.93 -0.30 0.67 16 10 C 0.05 0.44 6.71 37.16 0.25 0.69 16 11 O -0.56 -5.64 12.28 -35.23 -0.43 -6.08 16 12 N -0.66 -9.38 4.89 -109.22 -0.53 -9.92 16 13 C 0.04 0.53 5.97 -4.97 -0.03 0.50 16 14 C 0.50 9.91 7.87 -10.99 -0.09 9.82 16 15 O -0.54 -13.22 16.20 5.56 0.09 -13.13 16 16 N -0.71 -14.96 5.55 -61.48 -0.34 -15.30 16 17 C 0.25 6.69 5.43 -5.20 -0.03 6.66 16 18 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 19 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 22 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.07 0.49 6.02 -51.93 -0.31 0.17 16 29 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 30 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.90 6.89 -52.49 -0.36 1.54 16 33 H 0.05 0.41 7.35 -51.93 -0.38 0.03 16 34 H 0.05 0.38 7.94 -51.93 -0.41 -0.03 16 35 H 0.38 2.20 9.12 45.56 0.42 2.61 16 36 H 0.36 5.63 7.06 -39.29 -0.28 5.36 16 37 H 0.10 1.17 8.05 -51.93 -0.42 0.75 16 38 H 0.05 0.61 7.36 -51.93 -0.38 0.22 16 39 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -34.20 351.20 -8.23 -42.43 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.26 Total: 10.92 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.76 Total: -4.55 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.14 Total: -50.72 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.34 Total: -19.20 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.20 -8.23 -42.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782080705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.431 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds