Wall clock time and date at job start Tue Mar 31 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 10 10 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 11 11 O 1.42901 * 109.46921 * 55.00135 * 10 8 7 12 12 N 1.46908 * 109.46701 * 204.99871 * 8 7 2 13 13 C 1.46905 * 110.99671 * 154.99873 * 12 8 7 14 14 C 1.50701 * 109.46838 * 179.97438 * 13 12 8 15 15 O 1.21282 * 120.00027 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00142 * 179.97438 * 14 13 12 17 17 C 1.46491 * 120.00225 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47331 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00095 * 0.02562 * 18 17 16 20 20 C 1.37886 * 120.00414 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99289 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00041 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47317 * 90.00109 * 22 20 18 24 24 H 1.48506 * 109.46789 * 210.00183 * 22 20 18 25 25 H 1.48502 * 109.47130 * 329.99667 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 29 29 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 30 30 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 31 31 H 1.08001 * 119.99773 * 180.02562 * 5 4 3 32 32 H 1.08000 * 120.00080 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47184 * 174.99667 * 10 8 7 34 34 H 1.08993 * 109.47400 * 294.99635 * 10 8 7 35 35 H 0.96696 * 113.99748 * 180.02562 * 11 10 8 36 36 H 1.00903 * 110.99760 * 278.95069 * 12 8 7 37 37 H 1.08994 * 109.47366 * 299.99732 * 13 12 8 38 38 H 1.08998 * 109.46974 * 60.00275 * 13 12 8 39 39 H 0.97005 * 119.99645 * 0.02562 * 16 14 13 40 40 H 1.09001 * 109.47388 * 300.00028 * 17 16 14 41 41 H 1.08996 * 109.47396 * 60.00379 * 17 16 14 42 42 H 0.97006 * 119.99353 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0016 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 1 0.5337 -2.3930 0.6002 10 6 1.0812 -2.8875 -1.4238 11 8 2.2652 -2.9167 -2.2234 12 7 2.2867 -3.5510 0.6021 13 6 1.4650 -4.6299 1.1668 14 6 2.3615 -5.6853 1.7615 15 8 3.5662 -5.5516 1.7195 16 7 1.8245 -6.7772 2.3409 17 6 2.6959 -7.8028 2.9195 18 6 1.8530 -8.9091 3.4998 19 1 0.7759 -8.8539 3.4430 20 6 2.4569 -9.9923 4.1025 21 7 3.7685 -10.0597 4.1712 22 14 1.4122 -11.3638 4.8211 23 1 1.1655 -12.3950 3.7814 24 1 2.1250 -11.9793 5.9694 25 1 0.1154 -10.8076 5.2842 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 0.0001 0.0024 32 1 4.1206 -2.1322 0.0029 33 1 0.6152 -3.8728 -1.4285 34 1 0.3852 -2.1546 -1.8317 35 1 2.1097 -3.1540 -3.1478 36 1 2.9423 -3.9121 -0.0746 37 1 0.8163 -4.2243 1.9431 38 1 0.8558 -5.0730 0.3790 39 1 0.8609 -6.8839 2.3748 40 1 3.3444 -8.2087 2.1431 41 1 3.3054 -7.3597 3.7070 42 1 4.1934 -10.8216 4.5956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782080705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:24 Heat of formation + Delta-G solvation = -92.112758 kcal Electronic energy + Delta-G solvation = -22822.774759 eV Core-core repulsion = 19380.198579 eV Total energy + Delta-G solvation = -3442.576181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93010 -40.28383 -38.24109 -36.30012 -35.90312 -34.34372 -33.79833 -32.29574 -30.00876 -28.97022 -27.66116 -26.72698 -24.48549 -24.05545 -22.24960 -21.43740 -21.11310 -19.12572 -18.46164 -17.77067 -17.20581 -17.03655 -16.82629 -16.40675 -16.13734 -15.90409 -15.65474 -15.32383 -14.82720 -14.65454 -14.41882 -14.14583 -13.93606 -13.89515 -13.67025 -13.29108 -13.25424 -12.92859 -12.89939 -12.81137 -12.70314 -12.45344 -12.22555 -11.74573 -11.65857 -11.48759 -10.91543 -10.80384 -10.73334 -9.82718 -9.55458 -9.49270 -9.26914 -8.29149 -6.46011 0.54354 0.63295 1.43037 1.45755 1.57001 1.79726 2.28582 2.48724 2.93526 3.05753 3.17550 3.55110 3.81389 3.94198 4.07359 4.15652 4.18087 4.27934 4.29267 4.37998 4.48052 4.52450 4.55148 4.71680 4.80205 4.91483 4.97472 5.06052 5.11406 5.24151 5.27943 5.38776 5.49044 5.63059 5.69841 5.73649 5.79491 5.85079 6.09185 6.24781 6.29568 6.65588 6.89475 6.95055 7.23730 7.53432 8.83234 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028820 B = 0.002743 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.310600 B =10206.170662 C =10435.674601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.094 4.094 3 C -0.132 4.132 4 C -0.128 4.128 5 C -0.149 4.149 6 C -0.097 4.097 7 C -0.073 4.073 8 C 0.126 3.874 9 H 0.121 0.879 10 C 0.051 3.949 11 O -0.585 6.585 12 N -0.682 5.682 13 C 0.055 3.945 14 C 0.491 3.509 15 O -0.594 6.594 16 N -0.708 5.708 17 C 0.267 3.733 18 C -0.555 4.555 19 H 0.086 0.914 20 C 0.001 3.999 21 N -0.933 5.933 22 Si 0.986 3.014 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.254 1.254 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.394 0.606 36 H 0.349 0.651 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.409 0.591 40 H -0.015 1.015 41 H -0.016 1.016 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.531 21.126 -12.733 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.146 4.146 5 C -0.167 4.167 6 C -0.116 4.116 7 C -0.074 4.074 8 C 0.017 3.983 9 H 0.139 0.861 10 C -0.028 4.028 11 O -0.393 6.393 12 N -0.314 5.314 13 C -0.077 4.077 14 C 0.278 3.722 15 O -0.475 6.475 16 N -0.359 5.359 17 C 0.144 3.856 18 C -0.593 4.593 19 H 0.104 0.896 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.809 3.191 23 H -0.195 1.195 24 H -0.211 1.211 25 H -0.177 1.177 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.244 0.756 36 H 0.169 0.831 37 H 0.143 0.857 38 H 0.106 0.894 39 H 0.245 0.755 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.196 21.584 -11.524 26.908 hybrid contribution -0.270 -1.656 -0.786 1.853 sum -11.467 19.928 -12.310 26.079 Atomic orbital electron populations 1.20917 0.89327 1.03760 1.03178 1.20015 0.97405 0.92088 0.99931 1.21254 0.94233 0.98094 1.01427 1.21353 0.94944 0.98065 1.00213 1.21329 1.00345 0.93008 1.02038 1.20954 0.94767 0.97680 0.98190 1.19563 0.93515 0.93950 1.00370 1.20773 0.95770 0.88757 0.93040 0.86127 1.22868 0.87568 1.00795 0.91614 1.86500 1.33321 1.93355 1.26127 1.60143 1.18131 1.12417 1.40704 1.21839 0.94259 0.90553 1.01008 1.21456 0.89294 0.83090 0.78317 1.90651 1.17889 1.78738 1.60179 1.46150 1.11135 1.20831 1.57745 1.18501 0.90122 0.85713 0.91243 1.21633 0.94250 1.04732 1.38653 0.89611 1.26110 0.96333 1.01385 0.95986 1.70153 1.10905 1.31795 1.44268 0.85135 0.78504 0.77752 0.77687 1.19544 1.21091 1.17748 0.89985 0.90370 0.90762 0.84004 0.84479 0.86054 0.87934 0.92285 0.91007 0.75649 0.83090 0.85743 0.89431 0.75490 0.99678 0.99844 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.41 71.24 0.67 -0.69 16 2 C -0.09 -1.80 5.88 -19.87 -0.12 -1.92 16 3 C -0.13 -2.44 9.70 22.27 0.22 -2.23 16 4 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 5 C -0.15 -3.69 10.05 22.27 0.22 -3.47 16 6 C -0.10 -2.74 9.05 22.27 0.20 -2.54 16 7 C -0.07 -1.73 4.66 -19.87 -0.09 -1.82 16 8 C 0.13 2.56 2.13 44.17 0.09 2.65 16 9 H 0.12 1.90 5.82 -2.39 -0.01 1.89 16 10 C 0.05 0.80 6.71 71.98 0.48 1.28 16 11 O -0.59 -11.33 12.28 -148.98 -1.83 -13.15 16 12 N -0.68 -19.05 4.89 -499.45 -2.44 -21.49 16 13 C 0.06 1.44 5.97 85.56 0.51 1.95 16 14 C 0.49 19.82 7.87 87.66 0.69 20.51 16 15 O -0.59 -30.52 16.20 -3.04 -0.05 -30.57 16 16 N -0.71 -29.78 5.55 -466.81 -2.59 -32.37 16 17 C 0.27 14.88 5.43 85.64 0.46 15.35 16 18 C -0.55 -30.26 9.28 25.60 0.24 -30.02 16 19 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 20 C 0.00 0.07 5.46 84.66 0.46 0.53 16 21 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 22 Si 0.99 42.32 29.54 68.60 2.03 44.35 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 28 H 0.07 0.77 6.02 -2.38 -0.01 0.76 16 29 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.12 2.72 8.06 -2.91 -0.02 2.69 16 32 H 0.10 3.33 6.89 -2.91 -0.02 3.31 16 33 H 0.06 0.80 7.35 -2.39 -0.02 0.78 16 34 H 0.07 0.83 7.94 -2.39 -0.02 0.81 16 35 H 0.39 4.18 9.12 -74.06 -0.68 3.51 16 36 H 0.35 11.23 7.06 -89.69 -0.63 10.60 16 37 H 0.12 2.60 8.05 -2.39 -0.02 2.58 16 38 H 0.09 1.72 7.36 -2.39 -0.02 1.70 16 39 H 0.41 13.78 8.32 -92.70 -0.77 13.01 16 40 H -0.01 -0.93 8.14 -2.39 -0.02 -0.94 16 41 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 42 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -79.02 351.20 -1.35 -80.38 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -1.02 Total: 32.33 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 4.27 Total: -2.79 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.74 Total: -110.54 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.88 Total: -43.72 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -79.02 -1.35 -80.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782080705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.738 kcal (2) G-P(sol) polarization free energy of solvation -79.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds