Wall clock time and date at job start Tue Mar 31 2020 04:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36945 * 120.00378 * 2 1 4 4 H 1.08004 * 119.99788 * 170.36745 * 3 2 1 5 5 C 1.38808 * 119.99973 * 350.37302 * 3 2 1 6 6 N 1.31619 * 120.00072 * 8.03173 * 5 3 2 7 7 Si 1.86793 * 119.99982 * 188.04284 * 5 3 2 8 8 H 1.48500 * 109.47669 * 89.99571 * 7 5 3 9 9 H 1.48507 * 109.47218 * 209.99660 * 7 5 3 10 10 H 1.48498 * 109.47050 * 329.99480 * 7 5 3 11 11 C 1.46506 * 120.00182 * 180.02562 * 2 1 3 12 12 N 1.46498 * 109.47008 * 274.53988 * 11 2 1 13 13 C 1.36124 * 132.38069 * 95.12906 * 12 11 2 14 14 O 1.21281 * 134.28265 * 0.02562 * 13 12 11 15 15 C 1.51513 * 91.54178 * 180.02562 * 13 12 11 16 16 C 1.52996 * 113.69271 * 245.58249 * 15 13 12 17 17 C 1.53001 * 113.68835 * 114.53141 * 15 13 12 18 18 C 1.47395 * 132.37837 * 275.20574 * 12 11 2 19 19 H 1.08999 * 113.70556 * 65.59956 * 18 12 11 20 20 C 1.50691 * 113.70639 * 294.40237 * 18 12 11 21 21 C 1.39868 * 126.03992 * 343.01157 * 20 18 12 22 22 N 1.30840 * 108.20288 * 179.81647 * 21 20 18 23 23 N 1.40078 * 108.20357 * 0.44822 * 22 21 20 24 24 C 1.46506 * 126.03684 * 179.73894 * 23 22 21 25 25 C 1.34947 * 107.92803 * 359.71401 * 23 22 21 26 26 H 1.08991 * 109.47388 * 185.01106 * 1 2 3 27 27 H 1.09002 * 109.46850 * 305.01514 * 1 2 3 28 28 H 1.09007 * 109.47035 * 65.00775 * 1 2 3 29 29 H 0.96994 * 119.99957 * 180.02562 * 6 5 3 30 30 H 1.08994 * 109.47676 * 154.53538 * 11 2 1 31 31 H 1.09003 * 109.46693 * 34.53365 * 11 2 1 32 32 H 1.09004 * 109.46922 * 278.90032 * 16 15 13 33 33 H 1.09001 * 109.47580 * 158.89821 * 16 15 13 34 34 H 1.09006 * 109.47291 * 38.89426 * 16 15 13 35 35 H 1.09001 * 109.46470 * 201.10399 * 17 15 13 36 36 H 1.08996 * 109.47142 * 321.09797 * 17 15 13 37 37 H 1.08996 * 109.47330 * 81.10356 * 17 15 13 38 38 H 1.07998 * 125.89913 * 0.02562 * 21 20 18 39 39 H 1.09002 * 109.46638 * 269.96760 * 24 23 22 40 40 H 1.08994 * 109.47048 * 29.97007 * 24 23 22 41 41 H 1.09002 * 109.47341 * 149.97355 * 24 23 22 42 42 H 1.07994 * 126.12972 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2183 1.1924 0.1565 5 6 1.4704 2.3796 -0.2010 6 7 0.1547 2.3906 -0.2337 7 14 2.4236 3.9703 -0.4255 8 1 2.7086 4.1773 -1.8681 9 1 1.6176 5.1071 0.0879 10 1 3.7023 3.8913 0.3253 11 6 2.1975 -1.2688 -0.0006 12 7 2.3470 -1.7469 1.3761 13 6 1.6205 -2.6178 2.1289 14 8 0.6259 -3.2830 1.9307 15 6 2.5452 -2.4284 3.3141 16 6 3.3285 -3.6877 3.6901 17 6 1.8740 -1.7631 4.5173 18 6 3.3356 -1.4514 2.4286 19 1 3.3064 -0.4201 2.7802 20 6 4.7290 -1.9219 2.1003 21 6 5.0721 -2.8551 1.1165 22 7 6.3722 -3.0014 1.1276 23 7 6.8974 -2.1725 2.1272 24 6 8.3132 -2.0365 2.4784 25 6 5.8690 -1.5208 2.7093 26 1 -0.3634 -1.0236 0.0898 27 1 -0.3633 0.5897 0.8417 28 1 -0.3633 0.4342 -0.9315 29 1 -0.3200 3.2247 -0.3745 30 1 3.1827 -1.1194 -0.4423 31 1 1.6460 -2.0064 -0.5835 32 1 2.6963 -4.3436 4.2887 33 1 4.2107 -3.4084 4.2662 34 1 3.6365 -4.2083 2.7833 35 1 2.6359 -1.3245 5.1618 36 1 1.1981 -0.9816 4.1702 37 1 1.3099 -2.5090 5.0772 38 1 4.3831 -3.3641 0.4588 39 1 8.5680 -2.7646 3.2485 40 1 8.9255 -2.2134 1.5942 41 1 8.4994 -1.0303 2.8540 42 1 5.9425 -0.8068 3.5161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808149894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:57 Heat of formation + Delta-G solvation = 110.200475 kcal Electronic energy + Delta-G solvation = -24480.703903 eV Core-core repulsion = 21079.193434 eV Total energy + Delta-G solvation = -3401.510469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.46586 -39.99667 -36.17269 -35.52283 -33.16638 -32.57699 -30.76718 -30.35924 -27.49165 -27.06924 -26.59108 -25.90229 -23.96892 -22.30652 -21.00079 -20.36091 -20.23296 -17.59206 -16.97281 -16.46210 -16.11051 -15.69979 -15.39641 -15.29243 -14.68853 -14.31768 -13.64531 -13.55853 -13.45543 -13.25834 -12.94058 -12.76009 -12.56636 -12.47509 -12.17764 -11.95231 -11.91028 -11.72003 -11.24721 -11.05435 -10.88250 -10.81170 -10.70118 -10.51875 -10.25106 -10.07350 -9.88070 -9.35110 -9.13932 -8.58209 -8.32322 -8.10984 -7.08312 -5.71981 -3.17303 1.91180 2.52891 2.80983 3.13190 3.33141 3.39541 3.41319 3.78924 4.34506 4.44574 4.50378 4.85699 4.89960 4.98015 5.06316 5.21316 5.26465 5.28983 5.43172 5.54052 5.61199 5.72676 5.75733 5.88526 5.92221 5.99495 6.03940 6.09694 6.22232 6.25653 6.39303 6.53669 6.69467 6.85744 7.00085 7.31986 7.39703 7.64467 7.71292 7.75182 7.90697 8.30969 8.95529 9.18487 9.79685 10.23462 11.26245 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.006148 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.553277 B = 4553.600050 C = 5839.820346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.593 5.593 3 C -0.255 4.255 4 H 0.075 0.925 5 C 0.003 3.997 6 N -0.909 5.909 7 Si 0.909 3.091 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.359 3.641 12 N -0.619 5.619 13 C 0.529 3.471 14 O -0.523 6.523 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.124 4.124 18 C 0.214 3.786 19 H 0.100 0.900 20 C -0.222 4.222 21 C 0.071 3.929 22 N -0.302 5.302 23 N -0.380 5.380 24 C 0.105 3.895 25 C 0.064 3.936 26 H -0.004 1.004 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.252 0.748 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.178 0.822 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.265 -8.297 9.333 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.315 5.315 3 C -0.384 4.384 4 H 0.093 0.907 5 C -0.195 4.195 6 N -0.555 5.555 7 Si 0.739 3.261 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.207 1.207 11 C 0.152 3.848 12 N -0.360 5.360 13 C 0.314 3.686 14 O -0.398 6.398 15 C -0.125 4.125 16 C -0.171 4.171 17 C -0.182 4.182 18 C 0.108 3.892 19 H 0.118 0.882 20 C -0.234 4.234 21 C -0.116 4.116 22 N -0.123 5.123 23 N -0.163 5.163 24 C -0.037 4.037 25 C -0.082 4.082 26 H 0.015 0.985 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.195 0.805 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 13.713 -8.948 8.403 18.404 hybrid contribution -0.161 1.628 0.242 1.654 sum 13.552 -7.319 8.646 17.663 Atomic orbital electron populations 1.21084 0.81449 0.93676 1.01774 1.44780 1.02999 1.01243 1.82462 1.19297 0.91856 0.84074 1.43222 0.90745 1.24950 0.95648 0.98113 1.00759 1.70251 1.05330 1.25421 1.54524 0.86192 0.78774 0.83140 0.78007 1.21410 1.21693 1.20662 1.20902 0.96271 0.86898 0.80758 1.53253 1.26113 1.42345 1.14262 1.22142 0.82906 0.78132 0.85431 1.90650 1.25274 1.44021 1.79847 1.23054 0.95982 0.97094 0.96379 1.21440 0.99079 0.95140 1.01469 1.21503 1.00395 1.00610 0.95675 1.20453 0.84583 0.98211 0.85979 0.88216 1.19962 0.94947 1.05276 1.03240 1.23660 0.92233 0.97396 0.98284 1.77354 1.10675 1.15361 1.08873 1.48404 1.06633 1.33687 1.27553 1.21792 0.77068 1.02787 1.02043 1.22162 0.87098 0.99017 0.99964 0.98536 0.93781 0.93806 0.93748 0.91072 0.91801 0.92370 0.92085 0.92350 0.91744 0.91716 0.91940 0.80494 0.91034 0.89509 0.89625 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.29 8.99 59.84 0.54 4.83 16 2 N -0.59 -14.86 3.17 -184.86 -0.59 -15.45 16 3 C -0.26 -6.80 9.78 -15.06 -0.15 -6.95 16 4 H 0.07 1.92 7.84 -52.48 -0.41 1.51 16 5 C 0.00 0.07 5.45 -17.43 -0.10 -0.02 16 6 N -0.91 -26.18 9.50 55.49 0.53 -25.65 16 7 Si 0.91 21.49 29.56 -169.99 -5.02 16.46 16 8 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 C 0.36 7.45 7.22 -63.75 -0.46 6.99 16 12 N -0.62 -11.54 3.03 -175.24 -0.53 -12.07 16 13 C 0.53 10.11 8.62 -10.09 -0.09 10.02 16 14 O -0.52 -11.79 18.03 5.56 0.10 -11.69 16 15 C -0.12 -1.76 1.44 -154.92 -0.22 -1.98 16 16 C -0.11 -1.40 8.02 37.16 0.30 -1.10 16 17 C -0.12 -1.62 9.13 37.16 0.34 -1.28 16 18 C 0.21 3.29 4.65 -68.33 -0.32 2.98 16 19 H 0.10 1.62 8.01 -51.93 -0.42 1.21 16 20 C -0.22 -3.04 4.03 -105.06 -0.42 -3.47 16 21 C 0.07 1.02 10.49 -17.36 -0.18 0.84 16 22 N -0.30 -4.33 12.58 30.62 0.39 -3.95 16 23 N -0.38 -4.41 4.01 -68.16 -0.27 -4.68 16 24 C 0.10 0.73 11.47 59.85 0.69 1.42 16 25 C 0.06 0.73 11.40 -17.22 -0.20 0.54 16 26 H 0.00 -0.10 7.89 -51.93 -0.41 -0.51 16 27 H 0.04 1.25 7.10 -51.93 -0.37 0.88 16 28 H 0.04 1.22 7.02 -51.93 -0.36 0.85 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 30 H 0.07 1.41 8.00 -51.93 -0.42 1.00 16 31 H 0.06 1.31 8.06 -51.93 -0.42 0.89 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 34 H 0.06 0.77 6.84 -51.93 -0.36 0.42 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.18 2.49 8.06 -52.49 -0.42 2.07 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 351.95 15.07 5.30 5.30 Total: -1.00 -33.26 351.95 -6.88 -40.14 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.51 Total: -1.22 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -0.27 Total: 12.80 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.48 Total: -61.80 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.10 Total: -11.69 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.26 -6.88 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808149894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.339 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds