Wall clock time and date at job start Tue Mar 31 2020 04:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36939 * 119.99738 * 2 1 4 4 H 1.08001 * 119.99524 * 159.35991 * 3 2 1 5 5 C 1.38813 * 120.00089 * 339.35999 * 3 2 1 6 6 N 1.31611 * 120.00146 * 347.96498 * 5 3 2 7 7 Si 1.86802 * 119.99475 * 167.96469 * 5 3 2 8 8 H 1.48507 * 109.46738 * 180.02562 * 7 5 3 9 9 H 1.48493 * 109.47355 * 299.99613 * 7 5 3 10 10 H 1.48498 * 109.47264 * 60.00347 * 7 5 3 11 11 C 1.46495 * 120.00124 * 180.02562 * 2 1 3 12 12 N 1.46501 * 109.46906 * 269.99432 * 11 2 1 13 13 C 1.34606 * 134.66964 * 269.63611 * 12 11 2 14 14 O 1.21283 * 131.84701 * 0.02562 * 13 12 11 15 15 C 1.50565 * 96.30848 * 180.02562 * 13 12 11 16 16 C 1.52996 * 114.57529 * 246.83105 * 15 13 12 17 17 C 1.53001 * 114.21831 * 113.62076 * 15 13 12 18 18 C 1.46365 * 134.66582 * 90.00097 * 12 11 2 19 19 H 1.09000 * 113.04665 * 295.43483 * 18 12 11 20 20 C 1.50702 * 113.05112 * 64.58931 * 18 12 11 21 21 C 1.39874 * 126.03534 * 20.19020 * 20 18 12 22 22 N 1.30845 * 108.19843 * 179.81876 * 21 20 18 23 23 N 1.40083 * 108.20097 * 0.43580 * 22 21 20 24 24 C 1.46505 * 126.03226 * 179.73982 * 23 22 21 25 25 C 1.34944 * 107.92959 * 359.72048 * 23 22 21 26 26 H 1.09000 * 109.47591 * 84.88966 * 1 2 3 27 27 H 1.09002 * 109.47462 * 204.89256 * 1 2 3 28 28 H 1.09000 * 109.47327 * 324.89009 * 1 2 3 29 29 H 0.96998 * 119.99935 * 180.02562 * 6 5 3 30 30 H 1.09001 * 109.47037 * 29.99474 * 11 2 1 31 31 H 1.09003 * 109.47257 * 150.00055 * 11 2 1 32 32 H 1.09001 * 109.47621 * 152.79151 * 16 15 13 33 33 H 1.08999 * 109.46777 * 272.78960 * 16 15 13 34 34 H 1.09000 * 109.47307 * 32.78576 * 16 15 13 35 35 H 1.08998 * 109.46903 * 327.38119 * 17 15 13 36 36 H 1.08998 * 109.47121 * 87.38177 * 17 15 13 37 37 H 1.08998 * 109.47276 * 207.38090 * 17 15 13 38 38 H 1.07996 * 125.90320 * 359.97438 * 21 20 18 39 39 H 1.08994 * 109.47372 * 269.97301 * 24 23 22 40 40 H 1.09000 * 109.47021 * 29.98182 * 24 23 22 41 41 H 1.08998 * 109.46967 * 149.97409 * 24 23 22 42 42 H 1.08005 * 126.12530 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1776 1.2159 0.3297 5 6 1.5223 2.3495 -0.4238 6 7 0.3631 2.2840 -1.0435 7 14 2.3236 4.0083 -0.1143 8 1 1.4584 5.0853 -0.6591 9 1 2.5005 4.2078 1.3465 10 1 3.6484 4.0507 -0.7838 11 6 2.1974 -1.2687 -0.0006 12 7 2.4417 -1.6921 1.3805 13 6 3.4314 -1.4919 2.2706 14 8 4.4709 -0.8712 2.1989 15 6 2.8165 -2.2960 3.3852 16 6 2.3901 -1.4737 4.6029 17 6 3.5949 -3.5620 3.7491 18 6 1.7118 -2.5100 2.3503 19 1 0.7586 -2.0718 2.6464 20 6 1.5752 -3.9491 1.9243 21 6 2.3704 -4.6068 0.9802 22 7 1.9518 -5.8427 0.8831 23 7 0.8690 -6.0077 1.7564 24 6 0.1015 -7.2399 1.9544 25 6 0.6579 -4.8315 2.3834 26 1 -0.3634 0.0915 -1.0235 27 1 -0.3634 -0.9322 0.4326 28 1 -0.3634 0.8407 0.5911 29 1 -0.0750 3.0970 -1.3399 30 1 1.6083 -2.0281 -0.5147 31 1 3.1499 -1.1381 -0.5143 32 1 1.5697 -1.9784 5.1131 33 1 3.2338 -1.3707 5.2852 34 1 2.0631 -0.4860 4.2778 35 1 4.0705 -3.9656 2.8553 36 1 4.3580 -3.3193 4.4887 37 1 2.9108 -4.3029 4.1627 38 1 3.1901 -4.1707 0.4286 39 1 -0.7351 -7.2630 1.2561 40 1 0.7457 -8.1014 1.7784 41 1 -0.2770 -7.2720 2.9760 42 1 -0.1061 -4.6307 3.1200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808149895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:01 Heat of formation + Delta-G solvation = 109.922937 kcal Electronic energy + Delta-G solvation = -24390.920842 eV Core-core repulsion = 20989.398338 eV Total energy + Delta-G solvation = -3401.522504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64081 -40.21278 -36.03737 -35.52926 -33.20657 -32.68370 -30.85632 -30.40507 -27.54991 -27.23392 -26.65058 -25.83057 -23.90521 -22.49041 -21.05103 -20.55245 -20.19887 -17.51825 -16.95323 -16.39251 -16.23875 -15.74848 -15.43663 -15.30625 -14.69884 -14.34734 -13.78892 -13.58257 -13.38414 -13.27269 -13.00187 -12.83715 -12.55821 -12.47725 -12.20458 -12.02113 -11.94725 -11.69249 -11.21322 -11.07492 -10.90615 -10.78398 -10.69452 -10.54930 -10.42524 -10.01547 -9.91943 -9.41072 -9.12026 -8.60371 -8.37044 -8.11213 -6.96418 -5.77126 -3.23293 1.85268 2.47508 2.76270 3.23058 3.41788 3.45664 3.50827 3.78672 4.23069 4.44067 4.51956 4.78798 4.91335 4.93286 5.00764 5.16756 5.22604 5.25779 5.44967 5.45974 5.57270 5.67414 5.72315 5.82796 5.86647 5.96536 6.02169 6.05193 6.15851 6.21546 6.40578 6.49810 6.64158 6.67264 6.94290 7.26077 7.36657 7.59531 7.69130 7.70278 7.85284 8.32861 8.97446 9.19118 9.79068 10.23908 11.27564 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019925 B = 0.004901 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.962575 B = 5712.055188 C = 6471.893697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.584 5.584 3 C -0.261 4.261 4 H 0.073 0.927 5 C 0.007 3.993 6 N -0.908 5.908 7 Si 0.908 3.092 8 H -0.290 1.290 9 H -0.283 1.283 10 H -0.281 1.281 11 C 0.371 3.629 12 N -0.616 5.616 13 C 0.522 3.478 14 O -0.527 6.527 15 C -0.118 4.118 16 C -0.120 4.120 17 C -0.109 4.109 18 C 0.202 3.798 19 H 0.090 0.910 20 C -0.226 4.226 21 C 0.071 3.929 22 N -0.300 5.300 23 N -0.381 5.381 24 C 0.104 3.896 25 C 0.062 3.938 26 H 0.035 0.965 27 H -0.003 1.003 28 H 0.045 0.955 29 H 0.254 0.746 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.179 0.821 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.769 -17.968 10.150 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.091 0.909 5 C -0.191 4.191 6 N -0.552 5.552 7 Si 0.737 3.263 8 H -0.216 1.216 9 H -0.210 1.210 10 H -0.207 1.207 11 C 0.164 3.836 12 N -0.357 5.357 13 C 0.306 3.694 14 O -0.402 6.402 15 C -0.123 4.123 16 C -0.178 4.178 17 C -0.167 4.167 18 C 0.095 3.905 19 H 0.107 0.893 20 C -0.239 4.239 21 C -0.116 4.116 22 N -0.121 5.121 23 N -0.163 5.163 24 C -0.037 4.037 25 C -0.084 4.084 26 H 0.053 0.947 27 H 0.015 0.985 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.196 0.804 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.329 -18.624 9.133 20.874 hybrid contribution -0.065 1.779 0.486 1.845 sum -2.394 -16.846 9.619 19.546 Atomic orbital electron populations 1.20881 0.82337 0.95527 0.99709 1.44602 1.02463 1.01476 1.82008 1.19283 0.97065 0.85101 1.37604 0.90884 1.24976 0.97317 0.98555 0.98260 1.70078 1.17155 1.27140 1.40863 0.86282 0.78572 0.83246 0.78181 1.21599 1.20960 1.20696 1.20712 0.96494 0.87232 0.79125 1.52400 1.20522 1.48229 1.14500 1.21857 0.83328 0.79493 0.84699 1.90632 1.24619 1.43643 1.81306 1.22464 0.96552 0.97441 0.95803 1.21437 1.01407 0.99617 0.95310 1.21370 0.99098 0.94672 1.01526 1.20255 0.96752 0.86373 0.87119 0.89254 1.20092 1.01331 0.97189 1.05279 1.23691 0.99621 0.90595 0.97647 1.77378 1.02026 1.19222 1.13520 1.48427 1.25866 1.09670 1.32327 1.21795 0.95291 0.84175 1.02457 1.22174 1.00546 0.86033 0.99678 0.94697 0.98472 0.93591 0.93610 0.91710 0.90657 0.91693 0.91735 0.91692 0.92344 0.92200 0.92011 0.80426 0.90928 0.89526 0.89661 0.80959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 8.96 59.84 0.54 4.41 16 2 N -0.58 -14.72 3.17 -184.86 -0.59 -15.30 16 3 C -0.26 -7.40 9.68 -15.06 -0.15 -7.55 16 4 H 0.07 2.16 7.86 -52.49 -0.41 1.75 16 5 C 0.01 0.21 5.13 -17.43 -0.09 0.12 16 6 N -0.91 -26.39 10.52 55.49 0.58 -25.81 16 7 Si 0.91 22.69 29.57 -169.99 -5.03 17.66 16 8 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 9 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.37 7.77 7.38 -63.75 -0.47 7.30 16 12 N -0.62 -11.51 3.08 -197.46 -0.61 -12.12 16 13 C 0.52 10.24 8.20 -23.39 -0.19 10.05 16 14 O -0.53 -12.60 18.03 5.55 0.10 -12.50 16 15 C -0.12 -1.70 1.57 -155.79 -0.24 -1.94 16 16 C -0.12 -1.52 9.25 37.16 0.34 -1.18 16 17 C -0.11 -1.32 8.10 37.16 0.30 -1.02 16 18 C 0.20 2.96 4.41 -81.48 -0.36 2.60 16 19 H 0.09 1.30 8.00 -51.93 -0.42 0.88 16 20 C -0.23 -2.91 3.91 -105.05 -0.41 -3.33 16 21 C 0.07 0.98 10.53 -17.36 -0.18 0.80 16 22 N -0.30 -4.13 12.58 30.63 0.39 -3.75 16 23 N -0.38 -4.10 4.01 -68.16 -0.27 -4.38 16 24 C 0.10 0.65 11.47 59.85 0.69 1.33 16 25 C 0.06 0.65 11.40 -17.23 -0.20 0.45 16 26 H 0.03 0.91 7.41 -51.93 -0.38 0.52 16 27 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 16 28 H 0.05 1.21 7.15 -51.93 -0.37 0.84 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 31 H 0.08 1.64 8.04 -51.93 -0.42 1.22 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 34 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.06 0.77 6.95 -51.93 -0.36 0.41 16 36 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 37 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 38 H 0.18 2.47 8.06 -52.49 -0.42 2.05 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -34.67 352.87 -7.07 -41.74 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -6.54 Total: -2.90 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -0.42 Total: 12.04 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.50 Total: -61.35 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.10 Total: -12.50 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.67 -7.07 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808149895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.658 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds