Wall clock time and date at job start Tue Mar 31 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00420 * 2 1 4 4 C 1.50703 * 109.47031 * 293.95677 * 3 2 1 5 5 O 1.21288 * 119.99982 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00024 * 180.02562 * 4 3 2 7 7 C 1.37092 * 120.00221 * 179.97438 * 6 4 3 8 8 H 1.07998 * 119.99954 * 359.97438 * 7 6 4 9 9 C 1.38956 * 120.00202 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99747 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99996 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46799 * 90.00175 * 11 9 7 13 13 H 1.48498 * 109.47368 * 209.99736 * 11 9 7 14 14 H 1.48500 * 109.47548 * 330.00315 * 11 9 7 15 15 C 1.46903 * 110.99806 * 123.95483 * 2 1 3 16 16 C 1.53001 * 109.46995 * 84.39604 * 15 2 1 17 17 C 1.53002 * 109.46895 * 180.08348 * 16 15 2 18 18 O 1.42905 * 109.47000 * 300.07912 * 16 15 2 19 19 C 1.50693 * 109.47519 * 60.08095 * 16 15 2 20 20 C 1.38238 * 120.00279 * 209.99784 * 19 16 15 21 21 C 1.38226 * 120.00103 * 180.02562 * 20 19 16 22 22 C 1.38235 * 120.00305 * 359.95909 * 21 20 19 23 23 C 1.38237 * 119.99995 * 0.27814 * 22 21 20 24 24 C 1.38234 * 119.99780 * 30.02137 * 19 16 15 25 25 H 1.08994 * 109.47463 * 296.08052 * 1 2 3 26 26 H 1.09003 * 109.46778 * 56.07850 * 1 2 3 27 27 H 1.08998 * 109.46900 * 176.07665 * 1 2 3 28 28 H 1.09006 * 109.47059 * 53.95231 * 3 2 1 29 29 H 1.08994 * 109.47348 * 173.94990 * 3 2 1 30 30 H 0.97012 * 119.99951 * 359.97438 * 6 4 3 31 31 H 0.97007 * 119.99922 * 180.02562 * 10 9 7 32 32 H 1.08998 * 109.47106 * 324.39052 * 15 2 1 33 33 H 1.09004 * 109.46751 * 204.39201 * 15 2 1 34 34 H 1.08993 * 109.47009 * 304.80081 * 17 16 15 35 35 H 1.09001 * 109.47353 * 64.80499 * 17 16 15 36 36 H 1.08996 * 109.46911 * 184.80001 * 17 16 15 37 37 H 0.96700 * 113.99975 * 71.89887 * 18 16 15 38 38 H 1.08001 * 119.99426 * 0.02562 * 20 19 16 39 39 H 1.08004 * 120.00115 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.00129 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.00488 * 179.72354 * 23 22 21 42 42 H 1.07996 * 120.00247 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 8 1.0054 1.4453 -2.1411 6 7 2.0190 3.3198 -1.5237 7 6 1.6933 3.9344 -2.7051 8 1 1.1309 3.3985 -3.4554 9 6 2.0867 5.2467 -2.9372 10 7 2.7714 5.8985 -2.0244 11 14 1.6435 6.0838 -4.5472 12 1 0.3311 6.7642 -4.4063 13 1 2.6860 7.0849 -4.8880 14 1 1.5610 5.0678 -5.6271 15 6 1.9954 -0.7660 1.1376 16 6 2.0466 -2.2510 0.7725 17 6 2.5929 -3.0490 1.9581 18 8 0.7306 -2.7093 0.4558 19 6 2.9466 -2.4443 -0.4205 20 6 2.7089 -3.4796 -1.3052 21 6 3.5348 -3.6571 -2.3993 22 6 4.5980 -2.7990 -2.6094 23 6 4.8387 -1.7666 -1.7221 24 6 4.0102 -1.5865 -0.6301 25 1 -0.3634 0.4518 0.9230 26 1 -0.3633 0.5735 -0.8528 27 1 -0.3633 -1.0252 -0.0703 28 1 1.5612 1.9274 0.8309 29 1 3.0797 1.3443 0.1083 30 1 2.5245 3.8010 -0.8499 31 1 3.0458 6.8148 -2.1862 32 1 1.3456 -0.6264 2.0015 33 1 2.9994 -0.4161 1.3778 34 1 3.5603 -2.6435 2.2542 35 1 1.8979 -2.9785 2.7948 36 1 2.7097 -4.0937 1.6700 37 1 0.3928 -2.3817 -0.3890 38 1 1.8779 -4.1496 -1.1414 39 1 3.3493 -4.4663 -3.0903 40 1 5.2435 -2.9380 -3.4640 41 1 5.6719 -1.0988 -1.8837 42 1 4.1965 -0.7782 0.0614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823591382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:08 Heat of formation + Delta-G solvation = -45.831113 kcal Electronic energy + Delta-G solvation = -24015.812896 eV Core-core repulsion = 20575.243638 eV Total energy + Delta-G solvation = -3440.569258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.04723 -38.44118 -37.34633 -35.38304 -33.80694 -32.51936 -31.22791 -30.65850 -29.49724 -27.99185 -26.91629 -24.73856 -23.16838 -22.46273 -21.82093 -20.03001 -19.14640 -17.83535 -17.81409 -16.41553 -15.98908 -15.31963 -15.07522 -14.93814 -14.53201 -14.36914 -13.98560 -13.89984 -13.66472 -13.28927 -13.07377 -12.94579 -12.65280 -12.43300 -12.11044 -12.10242 -11.78257 -11.57952 -11.51950 -11.30919 -11.19125 -10.97295 -10.77798 -10.47470 -10.38549 -10.21134 -9.95639 -9.46188 -8.69634 -8.53941 -8.37692 -7.96029 -7.82887 -6.40781 -3.81272 1.54768 1.62454 3.18094 3.26706 3.32693 3.91956 3.96151 3.99519 4.21459 4.25187 4.68604 4.90605 5.06405 5.14881 5.18111 5.22428 5.26980 5.32450 5.41010 5.56486 5.64305 5.67038 5.70942 5.77397 5.79796 5.90287 5.98226 6.02682 6.12076 6.16598 6.22337 6.29434 6.56384 6.64624 6.71009 6.75723 7.19031 7.25762 7.38316 7.56124 7.72019 8.07723 8.63360 9.19612 9.56018 10.08190 10.77095 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019177 B = 0.004197 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.726614 B = 6669.148748 C = 7350.292757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.513 5.513 3 C 0.046 3.954 4 C 0.446 3.554 5 O -0.575 6.575 6 N -0.566 5.566 7 C -0.297 4.297 8 H 0.102 0.898 9 C 0.022 3.978 10 N -0.903 5.903 11 Si 0.929 3.071 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.027 3.973 16 C 0.182 3.818 17 C -0.135 4.135 18 O -0.560 6.560 19 C -0.091 4.091 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.089 4.089 25 H 0.015 0.985 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.391 0.609 31 H 0.271 0.729 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.385 0.615 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -15.305 7.267 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.236 5.236 3 C -0.085 4.085 4 C 0.231 3.769 5 O -0.459 6.459 6 N -0.203 5.203 7 C -0.427 4.427 8 H 0.120 0.880 9 C -0.179 4.179 10 N -0.545 5.545 11 Si 0.756 3.244 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.102 4.102 16 C 0.141 3.859 17 C -0.192 4.192 18 O -0.370 6.370 19 C -0.091 4.091 20 C -0.130 4.130 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.137 4.137 24 C -0.107 4.107 25 H 0.033 0.967 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.224 0.776 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.237 0.763 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.794 -16.030 6.814 17.641 hybrid contribution -0.114 1.701 -0.231 1.720 sum 2.680 -14.329 6.583 15.995 Atomic orbital electron populations 1.22808 0.86691 1.02380 1.01450 1.61556 1.08614 1.12684 1.40763 1.21910 1.00316 0.89128 0.97177 1.19711 0.85386 0.82881 0.88903 1.90483 1.43795 1.64590 1.47027 1.41866 1.49543 1.10821 1.18029 1.19682 1.32838 0.95425 0.94714 0.87982 1.25241 0.96851 0.96654 0.99182 1.69613 1.38168 1.12195 1.34480 0.85876 0.78003 0.78914 0.81611 1.20456 1.20946 1.19426 1.22885 1.00613 0.94113 0.92558 1.19985 0.81808 0.92114 0.92015 1.21741 1.00704 1.00319 0.96469 1.86461 1.30566 1.75451 1.44516 1.20206 0.96547 0.95499 0.96864 1.20892 0.99536 0.97841 0.94720 1.21034 0.95774 0.99672 0.97711 1.21091 0.98050 0.95764 0.99114 1.21114 0.99747 0.97807 0.95005 1.20916 0.94429 0.97606 0.97715 0.96681 0.88721 0.91270 0.93597 0.89734 0.77580 0.91929 0.93441 0.90382 0.91172 0.91645 0.91700 0.76328 0.86092 0.86564 0.86592 0.86356 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 8.76 60.06 0.53 0.76 16 2 N -0.51 -8.25 3.62 -244.37 -0.89 -9.13 16 3 C 0.05 0.81 5.39 -4.98 -0.03 0.79 16 4 C 0.45 10.41 7.47 -10.99 -0.08 10.33 16 5 O -0.58 -15.29 13.91 5.55 0.08 -15.21 16 6 N -0.57 -14.28 5.29 -10.96 -0.06 -14.33 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 11 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 C 0.03 0.35 3.78 -3.82 -0.01 0.33 16 16 C 0.18 2.24 1.04 -91.77 -0.10 2.15 16 17 C -0.13 -1.36 8.83 37.16 0.33 -1.04 16 18 O -0.56 -7.32 10.97 -35.23 -0.39 -7.71 16 19 C -0.09 -1.22 4.38 -104.63 -0.46 -1.67 16 20 C -0.11 -1.46 9.20 -39.59 -0.36 -1.82 16 21 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 22 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 23 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 24 C -0.09 -1.23 8.88 -39.58 -0.35 -1.58 16 25 H 0.01 0.23 8.06 -51.93 -0.42 -0.19 16 26 H 0.09 1.86 5.83 -51.93 -0.30 1.55 16 27 H 0.07 0.98 4.79 -51.93 -0.25 0.73 16 28 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 29 H 0.08 1.35 7.78 -51.93 -0.40 0.94 16 30 H 0.39 9.47 7.90 -40.81 -0.32 9.15 16 31 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.05 0.60 7.81 -51.93 -0.41 0.19 16 33 H 0.08 0.91 5.95 -51.93 -0.31 0.60 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.38 5.04 6.32 45.56 0.29 5.32 16 38 H 0.12 1.44 7.48 -52.49 -0.39 1.04 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 42 H 0.12 1.51 6.16 -52.49 -0.32 1.19 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -31.05 341.02 -7.69 -38.75 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -5.31 Total: 15.88 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.97 Total: -5.62 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.22 Total: -47.30 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.31 Total: -22.92 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.05 -7.69 -38.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823591382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.085 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds