Wall clock time and date at job start Tue Mar 31 2020 03:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46905 * 109.46997 * 2 1 4 4 C 1.46893 * 111.00315 * 296.44766 * 3 2 1 5 5 C 1.50701 * 109.47130 * 294.60602 * 4 3 2 6 6 H 1.07997 * 119.99932 * 4.29489 * 5 4 3 7 7 C 1.37882 * 119.99927 * 184.29509 * 5 4 3 8 8 N 1.31516 * 119.99910 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99972 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46912 * 90.00231 * 9 7 5 11 11 H 1.48496 * 109.47498 * 210.00351 * 9 7 5 12 12 H 1.48501 * 109.47241 * 330.00376 * 9 7 5 13 13 C 1.46907 * 110.99865 * 60.40612 * 3 2 1 14 14 C 1.52998 * 109.47070 * 80.16293 * 13 3 2 15 15 O 1.42895 * 109.47015 * 54.79418 * 14 13 3 16 16 C 1.50696 * 109.47285 * 294.78852 * 14 13 3 17 17 N 1.34769 * 119.99970 * 298.08716 * 16 14 13 18 18 O 1.21283 * 119.99860 * 118.09381 * 16 14 13 19 19 C 1.50701 * 109.46691 * 174.78500 * 14 13 3 20 20 C 1.38240 * 119.99892 * 29.73484 * 19 14 13 21 21 C 1.38241 * 119.99927 * 179.76248 * 20 19 14 22 22 C 1.38228 * 119.99913 * 0.50594 * 21 20 19 23 23 C 1.38240 * 120.00026 * 359.74246 * 22 21 20 24 24 C 1.38232 * 120.00274 * 209.99930 * 19 14 13 25 25 H 1.09006 * 109.47196 * 299.86303 * 1 2 3 26 26 H 1.08999 * 109.47291 * 59.86037 * 1 2 3 27 27 H 1.08995 * 109.47555 * 179.87016 * 1 2 3 28 28 H 1.08995 * 109.47009 * 240.00507 * 2 1 3 29 29 H 1.09001 * 109.47229 * 120.00387 * 2 1 3 30 30 H 1.09007 * 109.46768 * 54.59852 * 4 3 2 31 31 H 1.08997 * 109.47601 * 174.59996 * 4 3 2 32 32 H 0.96996 * 119.99610 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46776 * 320.16423 * 13 3 2 34 34 H 1.09000 * 109.46720 * 200.16855 * 13 3 2 35 35 H 0.96702 * 114.00441 * 59.99077 * 15 14 13 36 36 H 0.96999 * 120.00625 * 4.68895 * 17 16 14 37 37 H 0.96999 * 120.00144 * 184.68771 * 17 16 14 38 38 H 1.08003 * 119.99930 * 359.97438 * 20 19 14 39 39 H 1.07998 * 119.99789 * 180.22637 * 21 20 19 40 40 H 1.07995 * 120.00049 * 179.72791 * 22 21 20 41 41 H 1.07999 * 120.00246 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00226 * 0.02562 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6193 2.0850 -1.2278 5 6 2.2997 1.4496 -2.4129 6 1 2.9080 0.5676 -2.2774 7 6 2.1457 1.9944 -3.6701 8 7 1.4053 3.0688 -3.8350 9 14 2.9896 1.2073 -5.1390 10 1 2.0898 0.1907 -5.7407 11 1 3.3024 2.2508 -6.1481 12 1 4.2477 0.5545 -4.6958 13 6 1.5565 2.1071 1.1926 14 6 2.4431 1.7435 2.3853 15 8 3.8106 1.9963 2.0568 16 6 2.2673 0.2837 2.7153 17 7 1.0603 -0.1808 3.0945 18 8 3.2120 -0.4732 2.6398 19 6 2.0501 2.5788 3.5764 20 6 0.7446 3.0111 3.7169 21 6 0.3829 3.7733 4.8121 22 6 1.3290 4.1118 5.7613 23 6 2.6356 3.6838 5.6182 24 6 2.9961 2.9173 4.5257 25 1 -0.3634 0.5117 0.8913 26 1 -0.3634 0.5160 -0.8887 27 1 -0.3634 -1.0276 -0.0023 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5382 2.0158 -1.3494 31 1 1.9109 3.1331 -1.1602 32 1 1.2967 3.4518 -4.7195 33 1 0.5251 1.8284 1.4083 34 1 1.6127 3.1806 1.0119 35 1 3.9975 2.9183 1.8329 36 1 0.2902 0.4089 3.0897 37 1 0.9617 -1.1049 3.3723 38 1 0.0064 2.7506 2.9728 39 1 -0.6378 4.1079 4.9237 40 1 1.0474 4.7109 6.6146 41 1 3.3749 3.9487 6.3596 42 1 4.0171 2.5835 4.4136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851798630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:40 Heat of formation + Delta-G solvation = -69.164339 kcal Electronic energy + Delta-G solvation = -24600.095976 eV Core-core repulsion = 21158.514914 eV Total energy + Delta-G solvation = -3441.581062 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89013 -39.71906 -38.66765 -37.24926 -35.06670 -34.54969 -32.77495 -31.77535 -31.10185 -29.96891 -27.71675 -25.74901 -24.81398 -23.32611 -23.13414 -21.42382 -20.92818 -18.90822 -18.64532 -18.35107 -17.50050 -16.92768 -16.85408 -16.62947 -16.23294 -15.96662 -15.65883 -15.41670 -14.98192 -14.92535 -14.61817 -14.25613 -13.87256 -13.64694 -13.59014 -13.22597 -13.14815 -12.85466 -12.67506 -12.61449 -12.47210 -12.35321 -11.94453 -11.90847 -11.47706 -11.41344 -11.00351 -10.91105 -10.68348 -10.59214 -9.83632 -9.71431 -8.85266 -8.19501 -6.26753 0.31557 0.48582 1.38761 1.40213 1.51966 1.58241 2.27327 2.40405 2.85017 3.01465 3.13986 3.53682 3.71445 3.86342 3.88564 4.13015 4.15515 4.22597 4.29431 4.36074 4.43572 4.59275 4.61698 4.66254 4.72677 4.91119 4.98683 5.01012 5.15392 5.20352 5.34223 5.47248 5.54174 5.59785 5.61583 5.66935 5.87222 6.07068 6.07865 6.29059 6.36107 6.62831 6.79792 6.87801 7.29010 7.41678 8.90779 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.004514 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.531458 B = 6201.523669 C = 6513.529182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.047 3.953 3 N -0.535 5.535 4 C 0.210 3.790 5 C -0.520 4.520 6 H 0.049 0.951 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.274 1.274 13 C 0.029 3.971 14 C 0.172 3.828 15 O -0.537 6.537 16 C 0.546 3.454 17 N -0.833 5.833 18 O -0.570 6.570 19 C -0.128 4.128 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.113 4.113 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.073 0.927 30 H -0.018 1.018 31 H 0.006 0.994 32 H 0.264 0.736 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.389 0.611 36 H 0.411 0.589 37 H 0.414 0.586 38 H 0.136 0.864 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.337 1.487 20.606 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.081 4.081 3 N -0.258 5.258 4 C 0.084 3.916 5 C -0.558 4.558 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.198 1.198 13 C -0.100 4.100 14 C 0.127 3.873 15 O -0.343 6.343 16 C 0.331 3.669 17 N -0.400 5.400 18 O -0.448 6.448 19 C -0.129 4.129 20 C -0.134 4.134 21 C -0.135 4.135 22 C -0.132 4.132 23 C -0.141 4.141 24 C -0.131 4.131 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.000 1.000 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.238 0.762 36 H 0.242 0.758 37 H 0.247 0.753 38 H 0.154 0.846 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.159 0.841 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.102 0.629 20.485 21.120 hybrid contribution -0.642 0.256 -1.340 1.508 sum -5.744 0.885 19.145 20.008 Atomic orbital electron populations 1.22275 0.96960 1.02650 1.01575 1.22207 0.93942 0.90639 1.01299 1.62019 1.59701 1.02126 1.01916 1.19419 0.92988 0.92826 0.86371 1.21416 1.29632 1.12137 0.92648 0.93227 1.25719 0.96098 0.95504 1.01596 1.70042 1.40698 1.22480 1.23759 0.85544 0.78927 0.78233 0.78898 1.19811 1.20451 1.19847 1.22910 0.97045 0.99558 0.90457 1.19736 0.84480 0.91180 0.91952 1.86565 1.23505 1.33778 1.90483 1.19896 0.83195 0.89266 0.74510 1.43561 1.09570 1.16993 1.69856 1.90733 1.41963 1.59064 1.53084 1.20167 0.95745 1.00813 0.96211 1.21281 0.94830 0.98381 0.98906 1.21485 1.01053 0.97464 0.93487 1.21591 0.92804 0.99052 0.99732 1.21423 0.97633 0.97560 0.97502 1.21101 0.99475 0.98220 0.94303 0.90958 0.94150 0.90869 0.93323 0.90944 1.00041 0.97555 0.92723 0.91259 0.90246 0.76168 0.75793 0.75325 0.84610 0.83068 0.83233 0.84061 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.73 9.31 71.98 0.67 -5.06 16 2 C 0.05 1.91 5.47 86.30 0.47 2.38 16 3 N -0.53 -23.06 4.36 -900.79 -3.93 -26.99 16 4 C 0.21 10.88 4.49 85.56 0.38 11.26 16 5 C -0.52 -29.99 8.55 25.60 0.22 -29.77 16 6 H 0.05 2.94 6.91 -2.91 -0.02 2.92 16 7 C 0.01 0.52 5.46 84.66 0.46 0.98 16 8 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 9 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.03 0.96 3.34 86.30 0.29 1.25 16 14 C 0.17 5.27 0.84 -12.29 -0.01 5.26 16 15 O -0.54 -19.34 11.26 -129.95 -1.46 -20.81 16 16 C 0.55 17.61 4.03 87.66 0.35 17.97 16 17 N -0.83 -17.82 8.14 -173.54 -1.41 -19.23 16 18 O -0.57 -24.12 16.65 15.99 0.27 -23.86 16 19 C -0.13 -3.06 4.64 -19.87 -0.09 -3.15 16 20 C -0.12 -2.16 8.38 22.27 0.19 -1.97 16 21 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 22 C -0.11 -1.63 10.05 22.27 0.22 -1.41 16 23 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 24 C -0.11 -2.60 9.35 22.27 0.21 -2.39 16 25 H 0.07 1.85 5.55 -2.38 -0.01 1.84 16 26 H 0.04 1.55 6.37 -2.39 -0.02 1.54 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 2.27 6.64 -2.39 -0.02 2.25 16 29 H 0.07 2.81 4.12 -2.39 -0.01 2.80 16 30 H -0.02 -0.96 6.14 -2.38 -0.01 -0.98 16 31 H 0.01 0.36 7.82 -2.39 -0.02 0.34 16 32 H 0.26 14.79 8.31 -92.71 -0.77 14.01 16 33 H 0.07 1.89 3.54 -2.39 -0.01 1.88 16 34 H 0.08 2.64 7.66 -2.39 -0.02 2.63 16 35 H 0.39 11.58 9.04 -74.06 -0.67 10.92 16 36 H 0.41 6.56 6.88 -92.71 -0.64 5.92 16 37 H 0.41 7.37 8.93 -92.71 -0.83 6.54 16 38 H 0.14 2.16 6.21 -2.91 -0.02 2.14 16 39 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 42 H 0.12 2.95 7.48 -2.91 -0.02 2.93 16 Total: -1.00 -76.85 332.47 -1.47 -78.32 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -1.05 Total: 28.10 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 3.81 Total: -8.06 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -5.06 Total: -101.14 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -1.20 Total: -44.66 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -76.85 -1.47 -78.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851798630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.157 kcal (2) G-P(sol) polarization free energy of solvation -76.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds