Wall clock time and date at job start Tue Mar 31 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47162 * 2 1 4 4 C 1.50699 * 109.47314 * 239.99829 * 2 1 3 5 5 H 1.07991 * 120.00374 * 240.00752 * 4 2 1 6 6 C 1.37882 * 119.99644 * 59.99851 * 4 2 1 7 7 N 1.31517 * 120.00109 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47429 * 90.00045 * 8 6 4 10 10 H 1.48498 * 109.47193 * 210.00237 * 8 6 4 11 11 H 1.48504 * 109.47293 * 330.00156 * 8 6 4 12 12 N 1.46902 * 109.47031 * 119.99927 * 2 1 3 13 13 C 1.46902 * 111.00037 * 59.68488 * 12 2 1 14 14 C 1.46897 * 111.00274 * 295.72857 * 12 2 1 15 15 C 1.53004 * 109.47087 * 286.26255 * 14 12 2 16 16 O 1.42900 * 109.47222 * 67.01762 * 15 14 12 17 17 C 1.50697 * 109.46827 * 307.01722 * 15 14 12 18 18 N 1.34774 * 120.00460 * 305.00379 * 17 15 14 19 19 O 1.21279 * 119.99949 * 125.00831 * 17 15 14 20 20 C 1.50702 * 109.46937 * 187.01951 * 15 14 12 21 21 C 1.38234 * 119.99855 * 29.72328 * 20 15 14 22 22 C 1.38243 * 119.99504 * 179.76666 * 21 20 15 23 23 C 1.38234 * 119.99777 * 0.50967 * 22 21 20 24 24 C 1.38232 * 120.00267 * 359.74198 * 23 22 21 25 25 C 1.38234 * 119.99564 * 209.99962 * 20 15 14 26 26 H 1.09008 * 109.47080 * 300.00225 * 1 2 3 27 27 H 1.08997 * 109.47342 * 59.99715 * 1 2 3 28 28 H 1.08994 * 109.47416 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99749 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46804 * 55.05749 * 13 12 2 31 31 H 1.08998 * 109.46793 * 295.06289 * 13 12 2 32 32 H 1.09002 * 109.47183 * 175.05731 * 13 12 2 33 33 H 1.08998 * 109.46610 * 46.26139 * 14 12 2 34 34 H 1.09000 * 109.47110 * 166.25907 * 14 12 2 35 35 H 0.96696 * 113.99866 * 59.99783 * 16 15 14 36 36 H 0.97002 * 120.00028 * 0.02562 * 18 17 15 37 37 H 0.96998 * 120.00300 * 180.02562 * 18 17 15 38 38 H 1.07996 * 120.00096 * 0.02562 * 21 20 15 39 39 H 1.07994 * 119.99539 * 180.23434 * 22 21 20 40 40 H 1.08006 * 119.99738 * 179.72800 * 23 22 21 41 41 H 1.08006 * 119.99792 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.00462 * 359.97438 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4119 10 1 2.4865 -0.1414 -5.1122 11 1 3.6293 -1.7584 -3.7122 12 7 2.0196 -0.6925 1.1995 13 6 1.5424 -2.0813 1.2372 14 6 1.6338 0.0300 2.4189 15 6 2.4911 1.2897 2.5582 16 8 2.1686 2.2039 1.5083 17 6 3.9487 0.9174 2.4700 18 7 4.4577 -0.0146 3.2999 19 8 4.6639 1.4567 1.6523 20 6 2.2180 1.9383 3.8907 21 6 1.8419 1.1639 4.9722 22 6 1.5961 1.7585 6.1958 23 6 1.7161 3.1285 6.3351 24 6 2.0871 3.9035 5.2522 25 6 2.3380 3.3084 4.0299 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7094 1.1618 -3.4844 30 1 1.8265 -2.5883 0.3150 31 1 0.4571 -2.0900 1.3370 32 1 1.9897 -2.5962 2.0875 33 1 0.5825 0.3110 2.3574 34 1 1.7881 -0.6123 3.2859 35 1 1.2440 2.4870 1.5036 36 1 3.8857 -0.4461 3.9537 37 1 5.3960 -0.2539 3.2433 38 1 1.7442 0.0940 4.8624 39 1 1.3060 1.1530 7.0417 40 1 1.5198 3.5935 7.2899 41 1 2.1805 4.9740 5.3609 42 1 2.6279 3.9139 3.1839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851809447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:42 Heat of formation + Delta-G solvation = -66.215126 kcal Electronic energy + Delta-G solvation = -24888.157946 eV Core-core repulsion = 21446.704771 eV Total energy + Delta-G solvation = -3441.453175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66283 -39.54996 -38.87298 -37.03815 -35.07230 -34.41666 -32.70590 -31.75562 -30.67285 -29.30940 -27.30836 -26.36659 -24.94658 -23.23297 -23.10276 -21.41726 -20.64197 -18.79510 -18.57011 -18.14510 -17.52018 -16.87299 -16.80505 -16.43086 -15.89597 -15.81218 -15.48951 -15.25672 -15.04419 -14.58656 -14.33424 -14.23063 -13.94231 -13.68931 -13.56406 -13.13385 -13.04624 -12.64532 -12.54376 -12.48078 -12.35831 -12.32616 -12.00279 -11.82816 -11.65857 -11.15865 -10.90971 -10.59440 -10.54354 -10.21342 -9.81798 -9.66445 -8.77461 -8.04578 -6.11281 0.34309 0.50447 1.37947 1.41012 1.50267 1.79685 2.42506 2.45276 2.87695 3.16774 3.25198 3.52441 3.81054 3.98778 4.06908 4.15193 4.17652 4.32667 4.44721 4.60338 4.63838 4.67587 4.75756 4.85934 4.93796 4.99493 5.03283 5.17296 5.24074 5.27501 5.55110 5.62812 5.63145 5.68346 5.82222 5.91033 6.00229 6.10002 6.34546 6.46327 6.60402 6.75347 6.82728 7.02622 7.48870 7.54803 9.01286 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.004836 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.963323 B = 5788.391298 C = 5831.648720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.199 3.801 3 H 0.051 0.949 4 C -0.511 4.511 5 H 0.047 0.953 6 C 0.009 3.991 7 N -0.917 5.917 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.542 5.542 13 C 0.035 3.965 14 C 0.031 3.969 15 C 0.169 3.831 16 O -0.541 6.541 17 C 0.553 3.447 18 N -0.825 5.825 19 O -0.584 6.584 20 C -0.127 4.127 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.118 4.118 26 H 0.031 0.969 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.257 0.743 30 H 0.049 0.951 31 H 0.020 0.980 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.383 0.617 36 H 0.412 0.588 37 H 0.409 0.591 38 H 0.147 0.853 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.138 0.862 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 -0.415 22.569 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.092 3.908 3 H 0.068 0.932 4 C -0.550 4.550 5 H 0.065 0.935 6 C -0.189 4.189 7 N -0.557 5.557 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.265 5.265 13 C -0.113 4.113 14 C -0.098 4.098 15 C 0.124 3.876 16 O -0.347 6.347 17 C 0.338 3.662 18 N -0.391 5.391 19 O -0.462 6.462 20 C -0.129 4.129 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.133 4.133 24 C -0.143 4.143 25 C -0.137 4.137 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.232 0.768 36 H 0.243 0.757 37 H 0.241 0.759 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.155 0.845 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.160 0.032 21.678 21.678 hybrid contribution -1.036 -0.341 -1.253 1.661 sum -0.877 -0.308 20.425 20.446 Atomic orbital electron populations 1.22178 1.00671 0.98736 0.99883 1.19445 0.89544 0.95675 0.86157 0.93174 1.21446 1.29894 1.11914 0.91720 0.93519 1.25592 0.95837 0.95941 1.01499 1.70006 1.38286 1.24007 1.23429 0.85693 0.78642 0.78383 0.79692 1.19779 1.21259 1.20173 1.62242 1.59773 1.02541 1.01980 1.22248 0.97320 0.89878 1.01831 1.22896 0.97136 0.94669 0.95091 1.19845 0.92243 0.90017 0.85472 1.86725 1.33028 1.64056 1.50864 1.19890 0.88641 0.78522 0.79185 1.43293 1.15071 1.42008 1.38705 1.90701 1.62039 1.55490 1.37997 1.20185 1.03336 0.94822 0.94507 1.21339 0.98711 1.00805 0.92112 1.21521 0.98961 0.95306 0.97510 1.21593 0.98031 0.94359 0.99291 1.21391 0.99490 1.01080 0.92366 1.21096 0.99569 0.94467 0.98527 0.95066 0.92468 0.95569 0.93400 0.93226 0.96145 0.90232 0.93178 0.87170 0.76758 0.75743 0.75933 0.83557 0.82555 0.83177 0.84450 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.38 8.31 71.98 0.60 -6.78 16 2 C 0.20 10.09 2.11 44.17 0.09 10.18 16 3 H 0.05 2.93 5.19 -2.39 -0.01 2.92 16 4 C -0.51 -29.48 7.87 25.60 0.20 -29.28 16 5 H 0.05 2.72 6.72 -2.92 -0.02 2.70 16 6 C 0.01 0.54 5.30 84.66 0.45 0.99 16 7 N -0.92 -55.04 11.32 21.45 0.24 -54.79 16 8 Si 0.95 46.53 29.54 68.60 2.03 48.56 16 9 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 N -0.54 -21.97 4.06 -901.46 -3.66 -25.63 16 13 C 0.04 1.26 8.75 127.69 1.12 2.37 16 14 C 0.03 0.95 3.50 86.31 0.30 1.25 16 15 C 0.17 5.63 0.84 -12.29 -0.01 5.62 16 16 O -0.54 -22.37 8.51 -129.99 -1.11 -23.47 16 17 C 0.55 20.78 6.22 87.66 0.54 21.33 16 18 N -0.83 -20.96 8.69 -173.54 -1.51 -22.47 16 19 O -0.58 -29.32 17.34 15.96 0.28 -29.05 16 20 C -0.13 -3.26 4.76 -19.87 -0.09 -3.35 16 21 C -0.11 -2.01 8.67 22.27 0.19 -1.82 16 22 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16 23 C -0.11 -1.72 10.05 22.27 0.22 -1.50 16 24 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 25 C -0.12 -3.10 9.35 22.27 0.21 -2.89 16 26 H 0.03 1.26 6.25 -2.38 -0.01 1.25 16 27 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 28 H 0.03 1.19 6.51 -2.39 -0.02 1.17 16 29 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.05 2.04 6.34 -2.39 -0.02 2.03 16 31 H 0.02 0.70 6.58 -2.39 -0.02 0.68 16 32 H 0.08 2.16 8.10 -2.39 -0.02 2.15 16 33 H 0.05 1.57 5.89 -2.39 -0.01 1.56 16 34 H 0.11 2.43 5.28 -2.39 -0.01 2.41 16 35 H 0.38 13.63 9.04 -74.06 -0.67 12.96 16 36 H 0.41 7.23 7.59 -92.71 -0.70 6.52 16 37 H 0.41 9.34 8.93 -92.71 -0.83 8.51 16 38 H 0.15 1.92 5.96 -2.91 -0.02 1.90 16 39 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.11 3.27 7.49 -2.91 -0.02 3.24 16 Total: -1.00 -80.07 331.01 -0.57 -80.64 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -1.11 Total: 33.71 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 4.27 Total: -7.50 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -4.92 Total: -102.89 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.83 Total: -52.52 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -80.07 -0.57 -80.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851809447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.423 kcal (2) G-P(sol) polarization free energy of solvation -80.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds