Wall clock time and date at job start Tue Mar 31 2020 03:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47186 * 2 1 4 4 C 1.50699 * 109.47135 * 120.00163 * 2 1 3 5 5 H 1.07999 * 120.00277 * 119.99473 * 4 2 1 6 6 C 1.37879 * 119.99791 * 300.00151 * 4 2 1 7 7 N 1.31509 * 120.00180 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99811 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47193 * 90.00011 * 8 6 4 10 10 H 1.48506 * 109.47089 * 210.00120 * 8 6 4 11 11 H 1.48493 * 109.47085 * 329.99885 * 8 6 4 12 12 N 1.46899 * 109.47042 * 240.00005 * 2 1 3 13 13 C 1.46899 * 111.00485 * 303.14548 * 12 2 1 14 14 C 1.46906 * 110.99994 * 67.09926 * 12 2 1 15 15 C 1.53003 * 109.46783 * 77.82653 * 14 12 2 16 16 O 1.42894 * 109.47357 * 294.49500 * 15 14 12 17 17 C 1.50702 * 109.47213 * 54.50020 * 15 14 12 18 18 N 1.34772 * 120.00252 * 64.68795 * 17 15 14 19 19 O 1.21282 * 119.99763 * 244.68699 * 17 15 14 20 20 C 1.50704 * 109.46828 * 174.49595 * 15 14 12 21 21 C 1.38237 * 120.00006 * 329.72704 * 20 15 14 22 22 C 1.38235 * 120.00112 * 179.80824 * 21 20 15 23 23 C 1.38234 * 119.99755 * 0.40256 * 22 21 20 24 24 C 1.38234 * 119.99867 * 359.84900 * 23 22 21 25 25 C 1.38231 * 120.00048 * 150.00222 * 20 15 14 26 26 H 1.08998 * 109.47111 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47261 * 300.00167 * 1 2 3 28 28 H 1.09011 * 109.47090 * 59.99818 * 1 2 3 29 29 H 0.97004 * 120.00140 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47018 * 65.35404 * 13 12 2 31 31 H 1.08991 * 109.47305 * 185.36313 * 13 12 2 32 32 H 1.09008 * 109.46503 * 305.35921 * 13 12 2 33 33 H 1.09000 * 109.46926 * 197.82742 * 14 12 2 34 34 H 1.09000 * 109.47322 * 317.82790 * 14 12 2 35 35 H 0.96699 * 113.99976 * 300.00576 * 16 15 14 36 36 H 0.97003 * 119.99904 * 0.02562 * 18 17 15 37 37 H 0.97002 * 120.00103 * 180.02562 * 18 17 15 38 38 H 1.08007 * 120.00221 * 359.97438 * 21 20 15 39 39 H 1.07996 * 120.00281 * 180.22689 * 22 21 20 40 40 H 1.08001 * 119.99766 * 179.83216 * 23 22 21 41 41 H 1.08007 * 119.99952 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.00005 * 359.97438 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6295 -0.5460 4.4124 10 1 1.3429 -0.9494 5.1120 11 1 2.4857 -2.5662 3.7119 12 7 2.0196 -0.6925 -1.1994 13 6 1.4882 -2.0601 -1.2717 14 6 1.6919 0.0645 -2.4150 15 6 2.6682 1.2327 -2.5670 16 8 2.4753 2.1573 -1.4946 17 6 4.0825 0.7131 -2.5340 18 7 4.5231 -0.1041 -3.5109 19 8 4.8241 1.0304 -1.6283 20 6 2.4190 1.9280 -3.8806 21 6 1.9413 1.2116 -4.9621 22 6 1.7089 1.8501 -6.1659 23 6 1.9622 3.2033 -6.2907 24 6 2.4449 3.9186 -5.2107 25 6 2.6736 3.2809 -4.0058 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8901 29 1 0.7080 1.1607 3.4844 30 1 0.4069 -2.0232 -1.4039 31 1 1.9400 -2.5813 -2.1156 32 1 1.7235 -2.5905 -0.3489 33 1 1.7707 -0.5901 -3.2830 34 1 0.6745 0.4486 -2.3407 35 1 1.5851 2.5327 -1.4544 36 1 3.9300 -0.3575 -4.2355 37 1 5.4332 -0.4388 -3.4895 38 1 1.7470 0.1536 -4.8657 39 1 1.3322 1.2912 -7.0097 40 1 1.7833 3.7016 -7.2320 41 1 2.6432 4.9758 -5.3083 42 1 3.0506 3.8398 -3.1621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851809448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:47 Heat of formation + Delta-G solvation = -39.398469 kcal Electronic energy + Delta-G solvation = -24847.274311 eV Core-core repulsion = 21406.983994 eV Total energy + Delta-G solvation = -3440.290317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43648 -38.45047 -37.28101 -35.58158 -33.59454 -32.55539 -31.53247 -30.93661 -28.99692 -27.91193 -25.32872 -24.94547 -23.42774 -22.22358 -22.09466 -19.94951 -19.09162 -17.60161 -17.37055 -16.37698 -16.07088 -15.51566 -15.21340 -15.05451 -14.76428 -14.46403 -14.13024 -13.82818 -13.62434 -13.40632 -12.97581 -12.73756 -12.68645 -12.42472 -11.86599 -11.63606 -11.44434 -11.25555 -11.07780 -10.85321 -10.70867 -10.57931 -10.46857 -10.03881 -9.91448 -9.55106 -9.48280 -9.24846 -9.01575 -8.73744 -8.60392 -8.16964 -7.13765 -5.87900 -3.88097 1.18881 1.30587 3.20253 3.40617 3.46594 3.49329 3.56149 3.77012 4.37550 4.54719 4.67559 4.88312 4.97807 5.00724 5.15394 5.30573 5.35586 5.42837 5.47090 5.54533 5.75773 5.86434 5.95243 6.00150 6.11297 6.32918 6.35498 6.41528 6.50200 6.68769 6.80978 6.88186 6.92401 7.14575 7.20985 7.53722 7.63795 7.75436 7.94466 8.02803 8.33383 8.46163 8.69387 8.78063 9.15243 9.74393 11.19870 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023409 B = 0.004825 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.833704 B = 5801.747144 C = 5860.439538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.195 3.805 3 H 0.078 0.922 4 C -0.490 4.490 5 H 0.057 0.943 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.527 5.527 13 C 0.033 3.967 14 C 0.028 3.972 15 C 0.169 3.831 16 O -0.509 6.509 17 C 0.558 3.442 18 N -0.856 5.856 19 O -0.507 6.507 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.096 4.096 26 H 0.026 0.974 27 H 0.089 0.911 28 H 0.003 0.997 29 H 0.258 0.742 30 H 0.015 0.985 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.379 0.621 36 H 0.393 0.607 37 H 0.400 0.600 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 1.766 -19.518 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.090 3.910 3 H 0.095 0.905 4 C -0.529 4.529 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.202 1.202 12 N -0.250 5.250 13 C -0.115 4.115 14 C -0.101 4.101 15 C 0.124 3.876 16 O -0.314 6.314 17 C 0.341 3.659 18 N -0.422 5.422 19 O -0.379 6.379 20 C -0.115 4.115 21 C -0.133 4.133 22 C -0.139 4.139 23 C -0.138 4.138 24 C -0.138 4.138 25 C -0.114 4.114 26 H 0.046 0.954 27 H 0.108 0.892 28 H 0.022 0.978 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.227 0.773 36 H 0.220 0.780 37 H 0.231 0.769 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.213 2.027 -18.488 18.638 hybrid contribution -1.279 -0.613 0.280 1.446 sum -0.066 1.414 -18.208 18.263 Atomic orbital electron populations 1.22450 1.01519 0.99105 1.00166 1.19742 0.88996 0.96995 0.85302 0.90480 1.21061 1.29926 1.12090 0.89841 0.92434 1.24856 0.95398 0.95197 0.98771 1.69863 1.37427 1.23172 1.23065 0.86575 0.78582 0.79881 0.82779 1.20721 1.21532 1.20176 1.62380 1.59134 1.01667 1.01819 1.22249 0.96330 0.91398 1.01518 1.22759 0.96511 0.95137 0.95718 1.19797 0.93976 0.89786 0.84084 1.86749 1.36240 1.60122 1.48248 1.19376 0.87558 0.77872 0.81060 1.43600 1.17495 1.53040 1.28063 1.90754 1.56518 1.57109 1.33533 1.20527 1.00412 0.94935 0.95650 1.21139 0.99309 1.00166 0.92646 1.21110 1.00487 0.94887 0.97412 1.21180 0.99468 0.94523 0.98677 1.21176 0.99584 0.99973 0.93057 1.21138 0.98079 0.94121 0.98071 0.95446 0.89226 0.97811 0.93257 0.96610 0.94271 0.90447 0.91376 0.93235 0.77320 0.77979 0.76881 0.85600 0.85976 0.86217 0.85966 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.30 37.16 0.31 -3.79 16 2 C 0.20 4.89 2.19 -68.87 -0.15 4.74 16 3 H 0.08 2.13 5.18 -51.93 -0.27 1.86 16 4 C -0.49 -13.91 7.87 -34.44 -0.27 -14.18 16 5 H 0.06 1.66 6.93 -52.49 -0.36 1.30 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -26.07 11.32 55.43 0.63 -25.45 16 8 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 9 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 N -0.53 -11.08 4.05 -236.28 -0.96 -12.03 16 13 C 0.03 0.64 8.65 60.06 0.52 1.16 16 14 C 0.03 0.47 3.66 -3.82 -0.01 0.46 16 15 C 0.17 2.83 0.86 -92.92 -0.08 2.75 16 16 O -0.51 -9.94 8.71 -55.10 -0.48 -10.42 16 17 C 0.56 10.33 6.26 -10.99 -0.07 10.26 16 18 N -0.86 -11.30 8.70 31.22 0.27 -11.03 16 19 O -0.51 -12.17 17.34 -14.31 -0.25 -12.42 16 20 C -0.11 -1.50 4.59 -104.62 -0.48 -1.98 16 21 C -0.11 -1.22 8.13 -39.58 -0.32 -1.55 16 22 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 24 C -0.12 -1.26 10.05 -39.59 -0.40 -1.65 16 25 C -0.10 -1.23 9.35 -39.59 -0.37 -1.60 16 26 H 0.03 0.63 6.48 -51.93 -0.34 0.29 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 28 H 0.00 0.06 6.31 -51.92 -0.33 -0.26 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.02 0.29 6.57 -51.93 -0.34 -0.05 16 31 H 0.04 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.08 1.64 6.52 -51.92 -0.34 1.31 16 33 H 0.07 0.93 5.81 -51.93 -0.30 0.62 16 34 H 0.05 0.84 5.97 -51.93 -0.31 0.53 16 35 H 0.38 6.26 8.95 45.56 0.41 6.67 16 36 H 0.39 4.00 7.45 -40.82 -0.30 3.70 16 37 H 0.40 4.71 8.93 -40.82 -0.36 4.35 16 38 H 0.13 1.15 5.94 -52.48 -0.31 0.84 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.13 1.79 7.48 -52.49 -0.39 1.40 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -34.88 331.43 -7.72 -42.61 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -4.69 Total: 13.28 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.22 Total: -6.87 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.06 Total: -48.51 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.73 Total: -22.84 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.88 -7.72 -42.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851809448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.207 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds