Wall clock time and date at job start Tue Mar 31 2020 03:18:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09001 * 109.47233 * 2 1
4 4 C 1.50707 * 109.46715 * 240.00192 * 2 1 3
5 5 H 1.07996 * 119.99885 * 240.00094 * 4 2 1
6 6 C 1.37876 * 120.00031 * 60.00266 * 4 2 1
7 7 N 1.31516 * 120.00269 * 359.97438 * 6 4 2
8 8 Si 1.86800 * 120.00042 * 179.97438 * 6 4 2
9 9 H 1.48501 * 109.47204 * 59.99846 * 8 6 4
10 10 H 1.48495 * 109.47323 * 180.02562 * 8 6 4
11 11 H 1.48504 * 109.47216 * 299.99934 * 8 6 4
12 12 N 1.46898 * 109.47101 * 120.00460 * 2 1 3
13 13 C 1.46899 * 110.99789 * 176.04409 * 12 2 1
14 14 C 1.46895 * 110.99711 * 299.99621 * 12 2 1
15 15 C 1.53004 * 109.46993 * 158.31479 * 14 12 2
16 16 O 1.42898 * 109.47303 * 304.17133 * 15 14 12
17 17 C 1.50702 * 109.47035 * 64.16637 * 15 14 12
18 18 N 1.34779 * 120.00230 * 56.78041 * 17 15 14
19 19 O 1.21278 * 120.00257 * 236.77833 * 17 15 14
20 20 C 1.50697 * 109.47427 * 184.16620 * 15 14 12
21 21 C 1.38243 * 119.99783 * 329.73083 * 20 15 14
22 22 C 1.38231 * 119.99430 * 179.80826 * 21 20 15
23 23 C 1.38232 * 120.00496 * 0.39340 * 22 21 20
24 24 C 1.38234 * 120.00054 * 359.85619 * 23 22 21
25 25 C 1.38235 * 120.00063 * 149.99647 * 20 15 14
26 26 H 1.08998 * 109.46595 * 299.99756 * 1 2 3
27 27 H 1.09000 * 109.46871 * 59.99662 * 1 2 3
28 28 H 1.08995 * 109.47367 * 179.97438 * 1 2 3
29 29 H 0.96990 * 120.00471 * 179.97438 * 7 6 4
30 30 H 1.09003 * 109.46945 * 192.42521 * 13 12 2
31 31 H 1.09003 * 109.47298 * 72.42693 * 13 12 2
32 32 H 1.09000 * 109.47289 * 312.42398 * 13 12 2
33 33 H 1.08997 * 109.46958 * 278.31010 * 14 12 2
34 34 H 1.08999 * 109.47349 * 38.31844 * 14 12 2
35 35 H 0.96707 * 113.99784 * 299.99887 * 16 15 14
36 36 H 0.97008 * 119.99575 * 359.97438 * 18 17 15
37 37 H 0.96998 * 120.00164 * 179.97438 * 18 17 15
38 38 H 1.07997 * 119.99742 * 359.97438 * 21 20 15
39 39 H 1.08003 * 119.99672 * 180.23114 * 22 21 20
40 40 H 1.08005 * 120.00032 * 179.83552 * 23 22 21
41 41 H 1.08004 * 120.00302 * 179.97438 * 24 23 22
42 42 H 1.07996 * 120.00364 * 359.97438 * 25 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2306
5 1 2.6531 -1.5885 -1.1315
6 6 1.6992 -0.2393 -2.4828
7 7 0.9427 0.8298 -2.6035
8 14 2.3223 -1.1194 -4.0081
9 1 1.8278 -2.5197 -4.0084
10 1 1.8278 -0.4191 -5.2205
11 1 3.8074 -1.1189 -4.0079
12 7 2.0197 -0.6926 1.1994
13 6 3.4851 -0.7946 1.1869
14 6 1.5487 -0.0265 2.4210
15 6 1.5935 -1.0132 3.5895
16 8 0.8291 -2.1751 3.2614
17 6 3.0223 -1.4109 3.8566
18 7 3.9462 -0.4665 4.1234
19 8 3.3410 -2.5808 3.8316
20 6 1.0151 -0.3621 4.8193
21 6 1.1254 1.0048 4.9944
22 6 0.5913 1.6025 6.1206
23 6 -0.0460 0.8325 7.0755
24 6 -0.1517 -0.5349 6.9029
25 6 0.3790 -1.1323 5.7748
26 1 -0.3632 0.5138 0.8900
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 0.7087 1.1614 -3.4843
30 1 3.8072 -1.4935 1.9589
31 1 3.9193 0.1862 1.3807
32 1 3.8161 -1.1523 0.2119
33 1 2.1912 0.8262 2.6406
34 1 0.5249 0.3179 2.2754
35 1 -0.1026 -1.9937 3.0767
36 1 3.6914 0.4693 4.1431
37 1 4.8658 -0.7225 4.2957
38 1 1.6265 1.6058 4.2501
39 1 0.6742 2.6708 6.2557
40 1 -0.4609 1.2992 7.9567
41 1 -0.6493 -1.1366 7.6492
42 1 0.2962 -2.2005 5.6399
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000851809449.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:50
Heat of formation + Delta-G solvation = -37.841058 kcal
Electronic energy + Delta-G solvation = -24608.871357 eV
Core-core repulsion = 21168.648574 eV
Total energy + Delta-G solvation = -3440.222783 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.157 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.64778 -38.70199 -37.07663 -35.82703 -33.79893 -32.64773 -31.64547 -30.97096
-29.32893 -28.21349 -25.80655 -24.44284 -23.20139 -22.31918 -22.11717 -20.05377
-19.41718 -17.70439 -17.54968 -16.67918 -16.15038 -15.68476 -15.53611 -15.01353
-14.84861 -14.57637 -14.31353 -13.84115 -13.66586 -13.47885 -13.24578 -12.89495
-12.71387 -12.48428 -11.99886 -11.73240 -11.47428 -11.16525 -11.04923 -10.98067
-10.73825 -10.62085 -10.19246 -10.14317 -9.98769 -9.70383 -9.67973 -9.49676
-9.04879 -8.92622 -8.77704 -8.42967 -7.20065 -6.02937 -4.06776 1.14065
1.27374 2.85955 3.33065 3.36815 3.38496 3.41372 3.68545 4.27811
4.45903 4.60328 4.85644 4.89528 4.97041 5.03386 5.18659 5.22412
5.30868 5.38104 5.49368 5.79160 5.81504 5.91857 5.97107 6.16563
6.29881 6.34083 6.37594 6.44610 6.75814 6.78750 6.84192 6.91286
6.99225 7.10637 7.37508 7.45541 7.64549 7.81134 7.92142 8.15234
8.27747 8.45046 8.55140 8.99357 9.58212 11.03902
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.023640 B = 0.004521 C = 0.004190
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1184.171980 B = 6191.834059 C = 6681.272137
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.213 3.787
3 H -0.003 1.003
4 C -0.503 4.503
5 H 0.064 0.936
6 C 0.060 3.940
7 N -0.895 5.895
8 Si 0.897 3.103
9 H -0.276 1.276
10 H -0.288 1.288
11 H -0.278 1.278
12 N -0.521 5.521
13 C 0.022 3.978
14 C 0.026 3.974
15 C 0.168 3.832
16 O -0.511 6.511
17 C 0.552 3.448
18 N -0.857 5.857
19 O -0.521 6.521
20 C -0.116 4.116
21 C -0.110 4.110
22 C -0.120 4.120
23 C -0.118 4.118
24 C -0.121 4.121
25 C -0.096 4.096
26 H 0.006 0.994
27 H 0.086 0.914
28 H 0.037 0.963
29 H 0.261 0.739
30 H 0.055 0.945
31 H 0.008 0.992
32 H 0.082 0.918
33 H 0.034 0.966
34 H 0.092 0.908
35 H 0.380 0.620
36 H 0.397 0.603
37 H 0.403 0.597
38 H 0.126 0.874
39 H 0.123 0.877
40 H 0.121 0.879
41 H 0.122 0.878
42 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.561 3.636 18.017 18.389
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.107 3.893
3 H 0.014 0.986
4 C -0.541 4.541
5 H 0.082 0.918
6 C -0.141 4.141
7 N -0.534 5.534
8 Si 0.725 3.275
9 H -0.201 1.201
10 H -0.214 1.214
11 H -0.204 1.204
12 N -0.245 5.245
13 C -0.126 4.126
14 C -0.104 4.104
15 C 0.122 3.878
16 O -0.315 6.315
17 C 0.337 3.663
18 N -0.423 5.423
19 O -0.395 6.395
20 C -0.117 4.117
21 C -0.128 4.128
22 C -0.138 4.138
23 C -0.137 4.137
24 C -0.139 4.139
25 C -0.114 4.114
26 H 0.025 0.975
27 H 0.105 0.895
28 H 0.056 0.944
29 H 0.071 0.929
30 H 0.073 0.927
31 H 0.026 0.974
32 H 0.101 0.899
33 H 0.052 0.948
34 H 0.110 0.890
35 H 0.228 0.772
36 H 0.226 0.774
37 H 0.234 0.766
38 H 0.144 0.856
39 H 0.141 0.859
40 H 0.139 0.861
41 H 0.140 0.860
42 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -0.253 2.145 17.857 17.987
hybrid contribution 0.311 1.219 -0.875 1.532
sum 0.058 3.363 16.982 17.312
Atomic orbital electron populations
1.21891 0.97715 0.99858 0.99711 1.19261 0.92314 0.91847 0.85846
0.98560 1.21110 1.31057 1.12293 0.89653 0.91801 1.24909 0.95168
0.95057 0.98993 1.69869 1.36930 1.23054 1.23545 0.86575 0.79088
0.79867 0.81987 1.20127 1.21381 1.20364 1.61975 1.09331 1.51914
1.01243 1.22602 0.88530 0.98152 1.03336 1.22916 1.02699 0.93319
0.91422 1.19759 0.89776 0.87099 0.91166 1.86605 1.24616 1.29110
1.91131 1.19615 0.86570 0.85618 0.74534 1.43788 1.12351 1.10170
1.75984 1.90747 1.81043 1.18117 1.49572 1.20437 1.00379 0.94179
0.96732 1.21149 0.99937 0.93940 0.97824 1.21131 0.98560 0.99898
0.94234 1.21197 0.99208 0.94124 0.99122 1.21169 1.00059 0.94982
0.97735 1.21106 0.96595 1.00657 0.93027 0.97481 0.89535 0.94364
0.92943 0.92677 0.97378 0.89924 0.94795 0.89027 0.77241 0.77429
0.76612 0.85574 0.85858 0.86143 0.85952 0.85042
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.14 8.82 37.16 0.33 -2.82 16
2 C 0.21 5.24 2.06 -68.86 -0.14 5.10 16
3 H 0.00 -0.08 8.14 -51.93 -0.42 -0.51 16
4 C -0.50 -13.72 7.76 -34.44 -0.27 -13.99 16
5 H 0.06 1.78 6.48 -52.49 -0.34 1.44 16
6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16
7 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16
8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16
9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
12 N -0.52 -11.07 4.32 -236.28 -1.02 -12.09 16
13 C 0.02 0.45 8.39 60.06 0.50 0.96 16
14 C 0.03 0.44 3.34 -3.82 -0.01 0.43 16
15 C 0.17 2.62 0.84 -92.92 -0.08 2.54 16
16 O -0.51 -8.84 11.28 -55.12 -0.62 -9.47 16
17 C 0.55 9.20 3.99 -10.98 -0.04 9.15 16
18 N -0.86 -10.40 7.97 31.22 0.25 -10.15 16
19 O -0.52 -10.91 16.67 -14.33 -0.24 -11.15 16
20 C -0.12 -1.48 4.71 -104.62 -0.49 -1.97 16
21 C -0.11 -1.21 8.53 -39.58 -0.34 -1.55 16
22 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16
23 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16
24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16
25 C -0.10 -1.16 9.35 -39.58 -0.37 -1.53 16
26 H 0.01 0.13 6.02 -51.93 -0.31 -0.18 16
27 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16
28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16
29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16
30 H 0.05 1.11 4.57 -51.93 -0.24 0.87 16
31 H 0.01 0.15 7.88 -51.93 -0.41 -0.26 16
32 H 0.08 1.87 5.88 -51.93 -0.31 1.57 16
33 H 0.03 0.52 5.54 -51.93 -0.29 0.23 16
34 H 0.09 1.55 5.50 -51.93 -0.29 1.26 16
35 H 0.38 5.32 9.04 45.56 0.41 5.73 16
36 H 0.40 3.94 7.24 -40.82 -0.30 3.64 16
37 H 0.40 4.20 8.93 -40.82 -0.36 3.83 16
38 H 0.13 1.25 6.17 -52.49 -0.32 0.93 16
39 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16
40 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16
41 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16
42 H 0.13 1.64 7.48 -52.49 -0.39 1.24 16
LS Contribution 331.24 15.07 4.99 4.99
Total: -1.00 -33.23 331.24 -7.94 -41.18
By element:
Atomic # 1 Polarization: 16.23 SS G_CDS: -4.71 Total: 11.53 kcal
Atomic # 6 Polarization: -4.57 SS G_CDS: -2.20 Total: -6.77 kcal
Atomic # 7 Polarization: -46.57 SS G_CDS: -0.14 Total: -46.71 kcal
Atomic # 8 Polarization: -19.75 SS G_CDS: -0.86 Total: -20.61 kcal
Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -33.23 -7.94 -41.18 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000851809449.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.335 kcal
(2) G-P(sol) polarization free energy of solvation -33.233 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.841 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds