Wall clock time and date at job start Tue Mar 31 2020 03:18:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09001 * 109.47233 * 2 1
4 4 C 1.50707 * 109.46715 * 240.00192 * 2 1 3
5 5 H 1.07996 * 119.99885 * 240.00094 * 4 2 1
6 6 C 1.37876 * 120.00031 * 60.00266 * 4 2 1
7 7 N 1.31516 * 120.00269 * 359.97438 * 6 4 2
8 8 Si 1.86800 * 120.00042 * 179.97438 * 6 4 2
9 9 H 1.48501 * 109.47204 * 59.99846 * 8 6 4
10 10 H 1.48495 * 109.47323 * 180.02562 * 8 6 4
11 11 H 1.48504 * 109.47216 * 299.99934 * 8 6 4
12 12 N 1.46898 * 109.47101 * 120.00460 * 2 1 3
13 13 C 1.46899 * 110.99789 * 176.04409 * 12 2 1
14 14 C 1.46895 * 110.99711 * 299.99621 * 12 2 1
15 15 C 1.53004 * 109.46993 * 158.31479 * 14 12 2
16 16 O 1.42898 * 109.47303 * 304.17133 * 15 14 12
17 17 C 1.50702 * 109.47035 * 64.16637 * 15 14 12
18 18 N 1.34779 * 120.00230 * 56.78041 * 17 15 14
19 19 O 1.21278 * 120.00257 * 236.77833 * 17 15 14
20 20 C 1.50697 * 109.47427 * 184.16620 * 15 14 12
21 21 C 1.38243 * 119.99783 * 329.73083 * 20 15 14
22 22 C 1.38231 * 119.99430 * 179.80826 * 21 20 15
23 23 C 1.38232 * 120.00496 * 0.39340 * 22 21 20
24 24 C 1.38234 * 120.00054 * 359.85619 * 23 22 21
25 25 C 1.38235 * 120.00063 * 149.99647 * 20 15 14
26 26 H 1.08998 * 109.46595 * 299.99756 * 1 2 3
27 27 H 1.09000 * 109.46871 * 59.99662 * 1 2 3
28 28 H 1.08995 * 109.47367 * 179.97438 * 1 2 3
29 29 H 0.96990 * 120.00471 * 179.97438 * 7 6 4
30 30 H 1.09003 * 109.46945 * 192.42521 * 13 12 2
31 31 H 1.09003 * 109.47298 * 72.42693 * 13 12 2
32 32 H 1.09000 * 109.47289 * 312.42398 * 13 12 2
33 33 H 1.08997 * 109.46958 * 278.31010 * 14 12 2
34 34 H 1.08999 * 109.47349 * 38.31844 * 14 12 2
35 35 H 0.96707 * 113.99784 * 299.99887 * 16 15 14
36 36 H 0.97008 * 119.99575 * 359.97438 * 18 17 15
37 37 H 0.96998 * 120.00164 * 179.97438 * 18 17 15
38 38 H 1.07997 * 119.99742 * 359.97438 * 21 20 15
39 39 H 1.08003 * 119.99672 * 180.23114 * 22 21 20
40 40 H 1.08005 * 120.00032 * 179.83552 * 23 22 21
41 41 H 1.08004 * 120.00302 * 179.97438 * 24 23 22
42 42 H 1.07996 * 120.00364 * 359.97438 * 25 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2306
5 1 2.6531 -1.5885 -1.1315
6 6 1.6992 -0.2393 -2.4828
7 7 0.9427 0.8298 -2.6035
8 14 2.3223 -1.1194 -4.0081
9 1 1.8278 -2.5197 -4.0084
10 1 1.8278 -0.4191 -5.2205
11 1 3.8074 -1.1189 -4.0079
12 7 2.0197 -0.6926 1.1994
13 6 3.4851 -0.7946 1.1869
14 6 1.5487 -0.0265 2.4210
15 6 1.5935 -1.0132 3.5895
16 8 0.8291 -2.1751 3.2614
17 6 3.0223 -1.4109 3.8566
18 7 3.9462 -0.4665 4.1234
19 8 3.3410 -2.5808 3.8316
20 6 1.0151 -0.3621 4.8193
21 6 1.1254 1.0048 4.9944
22 6 0.5913 1.6025 6.1206
23 6 -0.0460 0.8325 7.0755
24 6 -0.1517 -0.5349 6.9029
25 6 0.3790 -1.1323 5.7748
26 1 -0.3632 0.5138 0.8900
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 0.7087 1.1614 -3.4843
30 1 3.8072 -1.4935 1.9589
31 1 3.9193 0.1862 1.3807
32 1 3.8161 -1.1523 0.2119
33 1 2.1912 0.8262 2.6406
34 1 0.5249 0.3179 2.2754
35 1 -0.1026 -1.9937 3.0767
36 1 3.6914 0.4693 4.1431
37 1 4.8658 -0.7225 4.2957
38 1 1.6265 1.6058 4.2501
39 1 0.6742 2.6708 6.2557
40 1 -0.4609 1.2992 7.9567
41 1 -0.6493 -1.1366 7.6492
42 1 0.2962 -2.2005 5.6399
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000851809449.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:50
Heat of formation + Delta-G solvation = -63.639698 kcal
Electronic energy + Delta-G solvation = -24609.990070 eV
Core-core repulsion = 21168.648574 eV
Total energy + Delta-G solvation = -3441.341496 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.157 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.83219 -39.70050 -38.63835 -37.21370 -35.18533 -34.46379 -32.69529 -31.77167
-31.16098 -29.54192 -27.47595 -26.17846 -24.63021 -23.29381 -23.14545 -21.48313
-20.92602 -18.87354 -18.64888 -18.37905 -17.51830 -17.13561 -16.85834 -16.42326
-16.00805 -15.87055 -15.53573 -15.24950 -15.07392 -14.79747 -14.46210 -14.25155
-14.11064 -13.72014 -13.59837 -13.06188 -12.92655 -12.83608 -12.61506 -12.43870
-12.35966 -12.11663 -11.96642 -11.89273 -11.77305 -11.15071 -10.99717 -10.79164
-10.68914 -10.49764 -9.83573 -9.71174 -8.89024 -8.11880 -6.22061 0.31403
0.48704 1.41341 1.42994 1.50519 1.58215 2.27926 2.41856 2.85323
3.03093 3.17170 3.54873 3.72491 3.86758 3.90835 4.13625 4.15839
4.29871 4.41996 4.51384 4.54362 4.65047 4.65421 4.73188 4.93591
5.00677 5.02908 5.07012 5.15516 5.24930 5.50405 5.54133 5.60165
5.61570 5.71581 5.78845 5.85155 6.07765 6.27349 6.28542 6.35399
6.68218 6.80934 6.90898 7.27835 7.46407 8.93398
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.023640 B = 0.004521 C = 0.004190
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1184.171980 B = 6191.834059 C = 6681.272137
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C 0.219 3.781
3 H -0.028 1.028
4 C -0.521 4.521
5 H 0.050 0.950
6 C 0.018 3.982
7 N -0.915 5.915
8 Si 0.953 3.047
9 H -0.277 1.277
10 H -0.281 1.281
11 H -0.274 1.274
12 N -0.534 5.534
13 C 0.030 3.970
14 C 0.029 3.971
15 C 0.174 3.826
16 O -0.536 6.536
17 C 0.545 3.455
18 N -0.835 5.835
19 O -0.572 6.572
20 C -0.129 4.129
21 C -0.116 4.116
22 C -0.118 4.118
23 C -0.114 4.114
24 C -0.124 4.124
25 C -0.112 4.112
26 H 0.037 0.963
27 H 0.061 0.939
28 H 0.029 0.971
29 H 0.262 0.738
30 H 0.060 0.940
31 H 0.026 0.974
32 H 0.055 0.945
33 H 0.056 0.944
34 H 0.093 0.907
35 H 0.390 0.610
36 H 0.411 0.589
37 H 0.413 0.587
38 H 0.135 0.865
39 H 0.151 0.849
40 H 0.150 0.850
41 H 0.142 0.858
42 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.790 5.180 19.730 20.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.113 3.887
3 H -0.011 1.011
4 C -0.559 4.559
5 H 0.068 0.932
6 C -0.181 4.181
7 N -0.555 5.555
8 Si 0.779 3.221
9 H -0.202 1.202
10 H -0.206 1.206
11 H -0.199 1.199
12 N -0.258 5.258
13 C -0.119 4.119
14 C -0.099 4.099
15 C 0.129 3.871
16 O -0.342 6.342
17 C 0.331 3.669
18 N -0.401 5.401
19 O -0.451 6.451
20 C -0.130 4.130
21 C -0.134 4.134
22 C -0.136 4.136
23 C -0.132 4.132
24 C -0.141 4.141
25 C -0.130 4.130
26 H 0.056 0.944
27 H 0.080 0.920
28 H 0.048 0.952
29 H 0.071 0.929
30 H 0.078 0.922
31 H 0.044 0.956
32 H 0.073 0.927
33 H 0.074 0.926
34 H 0.111 0.889
35 H 0.239 0.761
36 H 0.242 0.758
37 H 0.246 0.754
38 H 0.153 0.847
39 H 0.169 0.831
40 H 0.168 0.832
41 H 0.160 0.840
42 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -0.470 3.738 19.593 19.952
hybrid contribution 0.373 0.793 -1.291 1.560
sum -0.096 4.531 18.302 18.854
Atomic orbital electron populations
1.21689 0.96956 0.99283 0.99982 1.19038 0.92808 0.90273 0.86600
1.01094 1.21362 1.31171 1.12134 0.91277 0.93183 1.25575 0.95360
0.95726 1.01452 1.69971 1.37505 1.23904 1.24099 0.85695 0.78688
0.78681 0.79053 1.20247 1.20581 1.19927 1.61855 1.09684 1.52476
1.01796 1.22483 0.88430 0.99046 1.01904 1.22969 1.02902 0.94145
0.89922 1.19693 0.89311 0.86261 0.91870 1.86571 1.25601 1.30582
1.91413 1.19971 0.87538 0.85414 0.74014 1.43599 1.12268 1.10262
1.74008 1.90719 1.81889 1.20239 1.52265 1.20167 1.01950 0.95005
0.95878 1.21282 1.00250 0.93047 0.98802 1.21480 0.97407 1.01349
0.93343 1.21593 0.98066 0.93660 0.99842 1.21427 0.99561 0.95893
0.97256 1.21109 0.97651 1.00183 0.94085 0.94378 0.92042 0.95213
0.92864 0.92208 0.95608 0.92661 0.92572 0.88892 0.76121 0.75793
0.75445 0.84684 0.83140 0.83217 0.84009 0.86453
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.70 8.82 71.98 0.63 -5.06 16
2 C 0.22 10.90 2.06 44.17 0.09 10.99 16
3 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16
4 C -0.52 -28.97 7.76 25.60 0.20 -28.77 16
5 H 0.05 2.87 6.48 -2.91 -0.02 2.85 16
6 C 0.02 0.99 5.30 84.65 0.45 1.44 16
7 N -0.92 -51.73 11.32 21.45 0.24 -51.48 16
8 Si 0.95 44.25 29.54 68.60 2.03 46.28 16
9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16
10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16
12 N -0.53 -22.74 4.32 -901.46 -3.89 -26.63 16
13 C 0.03 1.22 8.39 127.69 1.07 2.30 16
14 C 0.03 0.96 3.34 86.31 0.29 1.25 16
15 C 0.17 5.33 0.84 -12.29 -0.01 5.32 16
16 O -0.54 -18.86 11.28 -129.96 -1.47 -20.33 16
17 C 0.55 17.98 3.99 87.66 0.35 18.33 16
18 N -0.83 -19.05 7.97 -173.53 -1.38 -20.44 16
19 O -0.57 -24.42 16.67 15.99 0.27 -24.15 16
20 C -0.13 -3.10 4.71 -19.87 -0.09 -3.20 16
21 C -0.12 -2.21 8.53 22.27 0.19 -2.02 16
22 C -0.12 -1.78 10.05 22.27 0.22 -1.56 16
23 C -0.11 -1.65 10.05 22.27 0.22 -1.43 16
24 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16
25 C -0.11 -2.59 9.35 22.27 0.21 -2.39 16
26 H 0.04 1.51 6.02 -2.39 -0.01 1.49 16
27 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16
28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16
29 H 0.26 14.15 8.31 -92.72 -0.77 13.38 16
30 H 0.06 2.41 4.57 -2.39 -0.01 2.40 16
31 H 0.03 0.94 7.88 -2.39 -0.02 0.92 16
32 H 0.05 2.56 5.88 -2.39 -0.01 2.55 16
33 H 0.06 1.58 5.54 -2.39 -0.01 1.57 16
34 H 0.09 3.00 5.50 -2.39 -0.01 2.99 16
35 H 0.39 11.14 9.04 -74.05 -0.67 10.47 16
36 H 0.41 7.17 7.24 -92.70 -0.67 6.50 16
37 H 0.41 8.02 8.93 -92.71 -0.83 7.19 16
38 H 0.14 2.25 6.17 -2.91 -0.02 2.23 16
39 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16
40 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16
41 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16
42 H 0.12 2.98 7.48 -2.91 -0.02 2.95 16
Total: -1.00 -72.95 331.24 -1.25 -74.19
By element:
Atomic # 1 Polarization: 30.39 SS G_CDS: -1.09 Total: 29.30 kcal
Atomic # 6 Polarization: -10.79 SS G_CDS: 4.05 Total: -6.74 kcal
Atomic # 7 Polarization: -93.52 SS G_CDS: -5.04 Total: -98.56 kcal
Atomic # 8 Polarization: -43.28 SS G_CDS: -1.20 Total: -44.48 kcal
Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal
Total: -72.95 -1.25 -74.19 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000851809449.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.555 kcal
(2) G-P(sol) polarization free energy of solvation -72.949 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.394 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.246 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.640 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds