Wall clock time and date at job start Tue Mar 31 2020 03:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46770 * 2 1 4 4 C 1.50700 * 109.46842 * 119.99814 * 2 1 3 5 5 H 1.08002 * 119.99758 * 120.00661 * 4 2 1 6 6 C 1.37879 * 120.00224 * 299.99540 * 4 2 1 7 7 N 1.31514 * 119.99999 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99727 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47324 * 89.99902 * 8 6 4 10 10 H 1.48502 * 109.46692 * 209.99839 * 8 6 4 11 11 H 1.48502 * 109.47254 * 329.99066 * 8 6 4 12 12 N 1.46896 * 109.46961 * 239.99652 * 2 1 3 13 13 C 1.46897 * 111.00028 * 183.95111 * 12 2 1 14 14 C 1.46900 * 110.99945 * 60.00205 * 12 2 1 15 15 C 1.52995 * 109.47257 * 201.87838 * 14 12 2 16 16 O 1.42903 * 109.47149 * 54.44771 * 15 14 12 17 17 C 1.50701 * 109.47471 * 294.44361 * 15 14 12 18 18 N 1.34778 * 119.99742 * 302.04278 * 17 15 14 19 19 O 1.21281 * 120.00093 * 122.03755 * 17 15 14 20 20 C 1.50702 * 109.47196 * 174.44216 * 15 14 12 21 21 C 1.38234 * 120.00152 * 29.73073 * 20 15 14 22 22 C 1.38233 * 119.99891 * 179.76799 * 21 20 15 23 23 C 1.38233 * 120.00302 * 0.50002 * 22 21 20 24 24 C 1.38243 * 119.99809 * 359.75473 * 23 22 21 25 25 C 1.38234 * 119.99834 * 359.97438 * 24 23 22 26 26 H 1.08993 * 109.47340 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46636 * 300.00053 * 1 2 3 28 28 H 1.09001 * 109.46986 * 60.00047 * 1 2 3 29 29 H 0.96998 * 119.99932 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47642 * 286.63452 * 13 12 2 31 31 H 1.09006 * 109.46865 * 46.63544 * 13 12 2 32 32 H 1.09006 * 109.47302 * 166.62955 * 13 12 2 33 33 H 1.09005 * 109.47280 * 81.87653 * 14 12 2 34 34 H 1.09001 * 109.47430 * 321.87828 * 14 12 2 35 35 H 0.96694 * 114.00442 * 59.99533 * 16 15 14 36 36 H 0.97000 * 120.00216 * 359.97438 * 18 17 15 37 37 H 0.97002 * 119.99717 * 179.97438 * 18 17 15 38 38 H 1.07998 * 119.99940 * 359.97438 * 21 20 15 39 39 H 1.08002 * 119.99744 * 180.23232 * 22 21 20 40 40 H 1.07997 * 120.00228 * 179.72594 * 23 22 21 41 41 H 1.08004 * 119.99660 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.99761 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6249 1.2792 2.6541 9 1 -0.8027 0.8730 2.6997 10 1 0.9761 1.9952 3.9067 11 1 0.8474 2.1767 1.4920 12 7 2.0197 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5487 -0.0265 -2.4210 15 6 1.5889 -1.0145 -3.5885 16 8 0.8485 -2.1876 -3.2455 17 6 3.0190 -1.3903 -3.8796 18 7 3.9177 -0.4341 -4.1871 19 8 3.3611 -2.5530 -3.8371 20 6 0.9792 -0.3748 -4.8092 21 6 1.0551 0.9945 -4.9829 22 6 0.5000 1.5807 -6.1050 23 6 -0.1401 0.7989 -7.0483 24 6 -0.2207 -0.5699 -6.8719 25 6 0.3393 -1.1567 -5.7526 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9035 -0.5277 4.4376 30 1 3.9192 0.1829 -1.3974 31 1 3.8172 -1.1363 -0.2067 32 1 3.8062 -1.5061 -1.9478 33 1 2.1932 0.8243 -2.6426 34 1 0.5260 0.3210 -2.2742 35 1 -0.0826 -2.0205 -3.0450 36 1 3.6440 0.4958 -4.2214 37 1 4.8383 -0.6760 -4.3741 38 1 1.5511 1.6059 -4.2436 39 1 0.5627 2.6501 -6.2425 40 1 -0.5777 1.2574 -7.9227 41 1 -0.7213 -1.1807 -7.6088 42 1 0.2759 -2.2260 -5.6147 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851809450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:53 Heat of formation + Delta-G solvation = -59.113377 kcal Electronic energy + Delta-G solvation = -24681.979960 eV Core-core repulsion = 21240.834740 eV Total energy + Delta-G solvation = -3441.145220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83607 -39.69638 -38.77810 -37.24648 -35.15864 -34.48867 -32.74842 -31.97884 -31.75465 -29.55686 -27.49582 -26.19781 -24.70596 -23.28857 -23.13534 -21.45041 -20.95569 -18.97481 -18.85062 -18.52180 -17.63181 -17.19804 -16.84380 -16.46637 -16.08191 -15.90079 -15.48877 -15.27861 -15.16268 -14.92271 -14.52948 -14.32240 -14.18623 -14.15327 -13.61254 -13.57371 -13.06622 -12.76081 -12.61712 -12.45228 -12.35087 -12.16355 -12.00610 -11.86566 -11.43340 -11.22712 -11.03746 -10.82814 -10.72059 -10.70397 -9.83006 -9.71297 -8.96713 -8.26548 -6.30753 0.31628 0.49287 1.31805 1.36104 1.47071 1.58382 2.27792 2.32923 2.85784 2.91976 3.07565 3.54349 3.64844 3.85202 3.89334 4.14406 4.16191 4.27057 4.36805 4.42581 4.48786 4.52394 4.64103 4.64713 4.72947 4.79104 4.82764 5.01152 5.05094 5.16060 5.18267 5.43063 5.54461 5.60656 5.62511 5.66111 5.84860 5.99988 6.08085 6.28968 6.31552 6.66893 6.76150 6.82784 7.28609 7.33564 8.90415 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020868 B = 0.004984 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.418435 B = 5616.752272 C = 6259.448571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.186 3.814 3 H -0.001 1.001 4 C -0.509 4.509 5 H 0.033 0.967 6 C 0.009 3.991 7 N -0.952 5.952 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.301 1.301 11 H -0.243 1.243 12 N -0.529 5.529 13 C 0.030 3.970 14 C 0.024 3.976 15 C 0.174 3.826 16 O -0.537 6.537 17 C 0.541 3.459 18 N -0.834 5.834 19 O -0.574 6.574 20 C -0.128 4.128 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.112 4.112 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.265 0.735 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.391 0.609 36 H 0.412 0.588 37 H 0.412 0.588 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.045 10.832 -23.667 26.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.079 3.921 3 H 0.017 0.983 4 C -0.547 4.547 5 H 0.051 0.949 6 C -0.188 4.188 7 N -0.592 5.592 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.229 1.229 11 H -0.166 1.166 12 N -0.252 5.252 13 C -0.118 4.118 14 C -0.105 4.105 15 C 0.128 3.872 16 O -0.343 6.343 17 C 0.327 3.673 18 N -0.401 5.401 19 O -0.452 6.452 20 C -0.129 4.129 21 C -0.132 4.132 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.130 4.130 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.240 0.760 36 H 0.243 0.757 37 H 0.245 0.755 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.157 0.843 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.619 9.275 -23.496 25.679 hybrid contribution -0.021 1.205 0.998 1.565 sum -4.640 10.480 -22.498 25.249 Atomic orbital electron populations 1.22154 0.96475 1.01574 0.99845 1.19532 0.92923 0.91756 0.87913 0.98346 1.21233 1.30924 1.12212 0.90371 0.94908 1.25856 0.97476 1.00267 0.95174 1.70061 1.47858 1.42690 0.98612 0.85780 0.79079 0.79643 0.77384 1.19112 1.22921 1.16622 1.61635 1.09913 1.52331 1.01370 1.22451 0.88185 0.99399 1.01748 1.23090 1.03519 0.94334 0.89513 1.19697 0.89292 0.86240 0.91958 1.86599 1.26557 1.30372 1.90756 1.20074 0.87720 0.85288 0.74259 1.43583 1.13001 1.10469 1.73028 1.90734 1.80861 1.21079 1.52570 1.20140 1.01771 0.95019 0.95975 1.21297 1.00145 0.92951 0.98823 1.21484 0.97245 1.01371 0.93371 1.21591 0.98175 0.93548 0.99894 1.21414 0.99546 0.96001 0.97267 1.21098 0.97558 1.00129 0.94251 0.92786 0.94557 0.90976 0.92593 0.94790 0.93365 0.92283 0.91766 0.87769 0.76008 0.75667 0.75511 0.84202 0.83053 0.83379 0.84253 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 8.52 71.98 0.61 -5.02 16 2 C 0.19 8.39 1.65 44.17 0.07 8.47 16 3 H 0.00 -0.04 7.20 -2.39 -0.02 -0.06 16 4 C -0.51 -29.19 8.33 25.60 0.21 -28.97 16 5 H 0.03 2.17 6.74 -2.91 -0.02 2.15 16 6 C 0.01 0.52 5.45 84.66 0.46 0.99 16 7 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 8 Si 0.95 43.81 24.37 68.60 1.67 45.48 16 9 H -0.27 -11.55 6.87 99.48 0.68 -10.87 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.24 -9.96 6.53 99.48 0.65 -9.31 16 12 N -0.53 -21.22 4.29 -901.46 -3.87 -25.09 16 13 C 0.03 1.25 8.49 127.69 1.08 2.33 16 14 C 0.02 0.69 3.29 86.30 0.28 0.97 16 15 C 0.17 4.91 0.84 -12.29 -0.01 4.90 16 16 O -0.54 -17.95 11.25 -129.95 -1.46 -19.42 16 17 C 0.54 17.15 4.00 87.66 0.35 17.50 16 18 N -0.83 -17.76 8.21 -173.53 -1.42 -19.18 16 19 O -0.57 -24.30 16.57 15.99 0.27 -24.04 16 20 C -0.13 -2.75 4.69 -19.86 -0.09 -2.85 16 21 C -0.11 -1.82 8.48 22.27 0.19 -1.63 16 22 C -0.12 -1.47 10.05 22.27 0.22 -1.25 16 23 C -0.11 -1.45 10.05 22.27 0.22 -1.23 16 24 C -0.12 -2.00 10.05 22.27 0.22 -1.77 16 25 C -0.11 -2.40 9.35 22.27 0.21 -2.19 16 26 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.04 1.47 3.27 -2.39 -0.01 1.47 16 28 H 0.07 2.19 6.02 -2.39 -0.01 2.17 16 29 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.03 1.18 7.86 -2.39 -0.02 1.16 16 31 H 0.05 2.36 5.87 -2.38 -0.01 2.35 16 32 H 0.06 2.42 4.72 -2.38 -0.01 2.41 16 33 H 0.06 1.50 5.64 -2.38 -0.01 1.49 16 34 H 0.10 2.70 5.50 -2.39 -0.01 2.69 16 35 H 0.39 10.19 9.04 -74.06 -0.67 9.52 16 36 H 0.41 6.21 7.27 -92.71 -0.67 5.54 16 37 H 0.41 7.61 8.93 -92.71 -0.83 6.79 16 38 H 0.14 1.76 6.23 -2.91 -0.02 1.74 16 39 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 42 H 0.12 2.78 7.48 -2.91 -0.02 2.76 16 Total: -1.00 -80.57 324.77 -1.64 -82.20 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -1.16 Total: 29.65 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 4.04 Total: -9.76 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -4.99 Total: -104.12 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.20 Total: -43.45 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.67 Total: 45.48 kcal Total: -80.57 -1.64 -82.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851809450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.089 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds