Wall clock time and date at job start Tue Mar 31 2020 02:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47346 * 2 1 4 4 H 1.08999 * 109.46858 * 185.16260 * 3 2 1 5 5 C 1.50694 * 109.47066 * 305.16995 * 3 2 1 6 6 H 1.07999 * 120.00217 * 120.00231 * 5 3 2 7 7 C 1.37879 * 120.00195 * 299.99130 * 5 3 2 8 8 N 1.31516 * 119.99841 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00268 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47261 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46983 * 120.00339 * 9 7 5 12 12 H 1.48498 * 109.47241 * 240.00074 * 9 7 5 13 13 N 1.46897 * 109.46652 * 65.16793 * 3 2 1 14 14 C 1.46901 * 111.00550 * 86.28590 * 13 3 2 15 15 C 1.53001 * 109.47484 * 174.25351 * 14 13 3 16 16 O 1.42904 * 109.46873 * 300.00207 * 15 14 13 17 17 C 1.50693 * 109.47105 * 60.00108 * 15 14 13 18 18 N 1.34783 * 119.99772 * 59.99811 * 17 15 14 19 19 O 1.21280 * 120.00401 * 240.00159 * 17 15 14 20 20 C 1.50696 * 109.46779 * 180.02562 * 15 14 13 21 21 C 1.38238 * 120.00236 * 329.72281 * 20 15 14 22 22 C 1.38234 * 119.99862 * 179.80957 * 21 20 15 23 23 C 1.38238 * 120.00254 * 0.40240 * 22 21 20 24 24 C 1.38236 * 119.99678 * 359.85443 * 23 22 21 25 25 C 1.38233 * 120.00142 * 359.95293 * 24 23 22 26 26 H 1.09002 * 109.47322 * 294.86219 * 1 2 3 27 27 H 1.09004 * 109.47429 * 174.86095 * 1 2 3 28 28 H 1.09003 * 109.47460 * 54.86543 * 1 2 3 29 29 H 1.08996 * 109.47395 * 120.00848 * 2 1 3 30 30 H 1.09009 * 109.46568 * 240.00385 * 2 1 3 31 31 H 0.96994 * 120.00486 * 180.02562 * 8 7 5 32 32 H 1.00905 * 111.00224 * 322.32956 * 13 3 2 33 33 H 1.08998 * 109.46976 * 294.25905 * 14 13 3 34 34 H 1.09004 * 109.46501 * 54.25275 * 14 13 3 35 35 H 0.96704 * 113.99556 * 299.99695 * 16 15 14 36 36 H 0.96995 * 120.00264 * 0.02562 * 18 17 15 37 37 H 0.97006 * 119.99564 * 179.97438 * 18 17 15 38 38 H 1.07991 * 119.99788 * 0.02562 * 21 20 15 39 39 H 1.07994 * 120.00019 * 180.23162 * 22 21 20 40 40 H 1.07997 * 120.00395 * 179.83335 * 23 22 21 41 41 H 1.08002 * 119.99789 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.00012 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4438 -0.0925 5 6 1.4359 2.1889 -1.1614 6 1 0.8269 3.0628 -0.9836 7 6 1.6609 1.7562 -2.4511 8 7 2.4023 0.6918 -2.6676 9 14 0.9127 2.6818 -3.8907 10 1 0.1273 3.8353 -3.3832 11 1 1.9959 3.1737 -4.7797 12 1 0.0207 1.7725 -4.6540 13 7 1.6548 2.0979 1.2569 14 6 2.6481 1.8440 2.3091 15 6 2.2895 2.6556 3.5556 16 8 2.2835 4.0476 3.2321 17 6 0.9239 2.2477 4.0450 18 7 0.6925 0.9710 4.4100 19 8 0.0331 3.0680 4.1105 20 6 3.3089 2.3955 4.6346 21 6 3.9474 1.1713 4.7017 22 6 4.8853 0.9342 5.6891 23 6 5.1786 1.9183 6.6145 24 6 4.5362 3.1407 6.5506 25 6 3.6013 3.3792 5.5608 26 1 -0.3634 0.4321 0.9324 27 1 -0.3634 -1.0236 -0.0921 28 1 -0.3634 0.5914 -0.8404 29 1 1.8933 -0.5139 0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 2.5610 0.3875 -3.5748 32 1 0.7347 1.8055 1.5501 33 1 2.6527 0.7823 2.5557 34 1 3.6358 2.1391 1.9550 35 1 3.1323 4.3801 2.9095 36 1 1.4050 0.3150 4.3580 37 1 -0.1865 0.7085 4.7254 38 1 3.7160 0.4014 3.9806 39 1 5.3868 -0.0209 5.7393 40 1 5.9094 1.7321 7.3876 41 1 4.7651 3.9094 7.2739 42 1 3.0997 4.3344 5.5106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852156115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:59 Heat of formation + Delta-G solvation = -59.499875 kcal Electronic energy + Delta-G solvation = -24273.891166 eV Core-core repulsion = 20832.729186 eV Total energy + Delta-G solvation = -3441.161980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.55554 -38.65437 -36.89822 -35.87189 -33.87494 -32.49597 -31.59926 -31.00528 -30.46558 -27.72811 -25.95011 -23.82434 -23.28941 -22.28013 -22.20453 -19.94860 -19.37700 -17.81245 -17.52270 -16.72376 -16.18194 -15.72436 -15.29385 -14.91696 -14.73978 -14.58328 -14.37636 -14.22705 -13.51925 -13.47967 -13.13965 -12.80352 -12.79977 -12.46992 -11.96900 -11.95308 -11.66340 -11.50277 -11.11075 -10.94694 -10.77667 -10.53454 -10.14562 -9.96501 -9.78478 -9.70761 -9.62006 -9.57390 -9.07441 -9.01903 -8.80430 -8.35281 -7.25047 -5.98397 -3.98957 1.11123 1.24743 2.78223 3.32773 3.33253 3.41125 3.48125 3.64983 4.28711 4.48997 4.57029 4.83345 4.87755 4.94782 4.99202 5.15084 5.30972 5.33848 5.46530 5.50106 5.77328 5.83746 5.90747 6.01332 6.28318 6.29285 6.32756 6.35236 6.41277 6.52015 6.81258 6.82302 6.84168 7.19136 7.21555 7.32863 7.48105 7.64117 7.84318 7.89464 8.23259 8.37668 8.47333 8.58107 9.08102 9.64891 11.08798 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.004291 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.547623 B = 6523.368639 C = 6651.084614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.485 4.485 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.671 5.671 14 C 0.040 3.960 15 C 0.166 3.834 16 O -0.513 6.513 17 C 0.540 3.460 18 N -0.853 5.853 19 O -0.514 6.514 20 C -0.117 4.117 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.096 4.096 26 H 0.026 0.974 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.008 0.992 30 H 0.094 0.906 31 H 0.258 0.742 32 H 0.328 0.672 33 H 0.029 0.971 34 H 0.082 0.918 35 H 0.382 0.618 36 H 0.398 0.602 37 H 0.404 0.596 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.339 -2.316 17.517 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.524 4.524 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.302 5.302 14 C -0.091 4.091 15 C 0.120 3.880 16 O -0.317 6.317 17 C 0.323 3.677 18 N -0.420 5.420 19 O -0.388 6.388 20 C -0.118 4.118 21 C -0.129 4.129 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.114 4.114 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.027 0.973 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.229 0.771 36 H 0.227 0.773 37 H 0.235 0.765 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.584 -1.143 17.329 17.961 hybrid contribution 0.166 -1.102 -0.715 1.324 sum 4.750 -2.245 16.613 17.424 Atomic orbital electron populations 1.21602 0.97616 0.98698 1.00878 1.22118 0.95077 1.01075 1.00161 1.19256 0.95931 0.88552 0.85429 0.94924 1.21115 1.30316 1.11491 0.89511 0.91798 1.24901 0.95546 0.95175 0.98737 1.69880 1.39238 1.24088 1.20586 0.86511 0.78975 0.79976 0.82432 1.19643 1.21206 1.21274 1.60707 1.03179 1.63216 1.03124 1.22624 0.98966 0.95880 0.91586 1.19796 0.90424 0.85525 0.92244 1.86607 1.38389 1.19837 1.86878 1.19810 0.89153 0.82297 0.76407 1.43722 1.17057 1.10691 1.70482 1.90748 1.45454 1.50827 1.51726 1.20418 0.98572 0.95215 0.97607 1.21186 0.96552 0.96704 0.98461 1.21143 0.98047 0.99421 0.95174 1.21207 0.99690 0.93746 0.98959 1.21169 0.96871 0.97315 0.98592 1.21102 0.97064 0.99560 0.93690 0.95538 0.95710 0.91114 0.97333 0.88745 0.93215 0.85293 0.95273 0.90002 0.77055 0.77324 0.76514 0.85404 0.85818 0.86121 0.85943 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.40 37.16 0.35 -2.41 16 2 C -0.14 -3.25 5.51 -26.73 -0.15 -3.40 16 3 C 0.22 5.17 2.34 -68.87 -0.16 5.01 16 4 H 0.03 0.85 7.69 -51.93 -0.40 0.45 16 5 C -0.49 -13.10 7.25 -34.44 -0.25 -13.35 16 6 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.44 16 8 N -0.90 -24.90 11.38 55.43 0.63 -24.27 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.67 -13.99 6.02 -107.95 -0.65 -14.64 16 14 C 0.04 0.66 3.90 -3.82 -0.01 0.65 16 15 C 0.17 2.50 0.84 -92.93 -0.08 2.43 16 16 O -0.51 -8.56 11.36 -55.14 -0.63 -9.19 16 17 C 0.54 8.84 5.74 -10.99 -0.06 8.78 16 18 N -0.85 -10.15 8.67 31.22 0.27 -9.88 16 19 O -0.51 -10.67 17.34 -14.35 -0.25 -10.92 16 20 C -0.12 -1.44 4.66 -104.62 -0.49 -1.93 16 21 C -0.11 -1.18 8.35 -39.58 -0.33 -1.51 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 25 C -0.10 -1.12 9.35 -39.58 -0.37 -1.49 16 26 H 0.03 0.51 6.63 -51.93 -0.34 0.17 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 1.67 6.86 -51.93 -0.36 1.31 16 29 H 0.01 0.16 7.54 -51.93 -0.39 -0.23 16 30 H 0.09 2.40 6.23 -51.92 -0.32 2.08 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.33 6.98 5.70 -39.29 -0.22 6.76 16 33 H 0.03 0.43 5.37 -51.93 -0.28 0.16 16 34 H 0.08 1.36 7.91 -51.93 -0.41 0.95 16 35 H 0.38 5.03 9.04 45.56 0.41 5.44 16 36 H 0.40 3.86 7.26 -40.82 -0.30 3.57 16 37 H 0.40 4.15 8.93 -40.82 -0.36 3.78 16 38 H 0.13 1.25 6.05 -52.49 -0.32 0.93 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.13 1.58 7.48 -52.48 -0.39 1.18 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -32.58 339.50 -8.29 -40.88 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -4.92 Total: 16.83 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.84 Total: -10.35 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.25 Total: -48.79 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.88 Total: -20.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.58 -8.29 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852156115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.625 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds