Wall clock time and date at job start Tue Mar 31 2020 02:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47346 * 2 1 4 4 H 1.08999 * 109.46858 * 185.16260 * 3 2 1 5 5 C 1.50694 * 109.47066 * 305.16995 * 3 2 1 6 6 H 1.07999 * 120.00217 * 120.00231 * 5 3 2 7 7 C 1.37879 * 120.00195 * 299.99130 * 5 3 2 8 8 N 1.31516 * 119.99841 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00268 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47261 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46983 * 120.00339 * 9 7 5 12 12 H 1.48498 * 109.47241 * 240.00074 * 9 7 5 13 13 N 1.46897 * 109.46652 * 65.16793 * 3 2 1 14 14 C 1.46901 * 111.00550 * 86.28590 * 13 3 2 15 15 C 1.53001 * 109.47484 * 174.25351 * 14 13 3 16 16 O 1.42904 * 109.46873 * 300.00207 * 15 14 13 17 17 C 1.50693 * 109.47105 * 60.00108 * 15 14 13 18 18 N 1.34783 * 119.99772 * 59.99811 * 17 15 14 19 19 O 1.21280 * 120.00401 * 240.00159 * 17 15 14 20 20 C 1.50696 * 109.46779 * 180.02562 * 15 14 13 21 21 C 1.38238 * 120.00236 * 329.72281 * 20 15 14 22 22 C 1.38234 * 119.99862 * 179.80957 * 21 20 15 23 23 C 1.38238 * 120.00254 * 0.40240 * 22 21 20 24 24 C 1.38236 * 119.99678 * 359.85443 * 23 22 21 25 25 C 1.38233 * 120.00142 * 359.95293 * 24 23 22 26 26 H 1.09002 * 109.47322 * 294.86219 * 1 2 3 27 27 H 1.09004 * 109.47429 * 174.86095 * 1 2 3 28 28 H 1.09003 * 109.47460 * 54.86543 * 1 2 3 29 29 H 1.08996 * 109.47395 * 120.00848 * 2 1 3 30 30 H 1.09009 * 109.46568 * 240.00385 * 2 1 3 31 31 H 0.96994 * 120.00486 * 180.02562 * 8 7 5 32 32 H 1.00905 * 111.00224 * 322.32956 * 13 3 2 33 33 H 1.08998 * 109.46976 * 294.25905 * 14 13 3 34 34 H 1.09004 * 109.46501 * 54.25275 * 14 13 3 35 35 H 0.96704 * 113.99556 * 299.99695 * 16 15 14 36 36 H 0.96995 * 120.00264 * 0.02562 * 18 17 15 37 37 H 0.97006 * 119.99564 * 179.97438 * 18 17 15 38 38 H 1.07991 * 119.99788 * 0.02562 * 21 20 15 39 39 H 1.07994 * 120.00019 * 180.23162 * 22 21 20 40 40 H 1.07997 * 120.00395 * 179.83335 * 23 22 21 41 41 H 1.08002 * 119.99789 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.00012 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4438 -0.0925 5 6 1.4359 2.1889 -1.1614 6 1 0.8269 3.0628 -0.9836 7 6 1.6609 1.7562 -2.4511 8 7 2.4023 0.6918 -2.6676 9 14 0.9127 2.6818 -3.8907 10 1 0.1273 3.8353 -3.3832 11 1 1.9959 3.1737 -4.7797 12 1 0.0207 1.7725 -4.6540 13 7 1.6548 2.0979 1.2569 14 6 2.6481 1.8440 2.3091 15 6 2.2895 2.6556 3.5556 16 8 2.2835 4.0476 3.2321 17 6 0.9239 2.2477 4.0450 18 7 0.6925 0.9710 4.4100 19 8 0.0331 3.0680 4.1105 20 6 3.3089 2.3955 4.6346 21 6 3.9474 1.1713 4.7017 22 6 4.8853 0.9342 5.6891 23 6 5.1786 1.9183 6.6145 24 6 4.5362 3.1407 6.5506 25 6 3.6013 3.3792 5.5608 26 1 -0.3634 0.4321 0.9324 27 1 -0.3634 -1.0236 -0.0921 28 1 -0.3634 0.5914 -0.8404 29 1 1.8933 -0.5139 0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 2.5610 0.3875 -3.5748 32 1 0.7347 1.8055 1.5501 33 1 2.6527 0.7823 2.5557 34 1 3.6358 2.1391 1.9550 35 1 3.1323 4.3801 2.9095 36 1 1.4050 0.3150 4.3580 37 1 -0.1865 0.7085 4.7254 38 1 3.7160 0.4014 3.9806 39 1 5.3868 -0.0209 5.7393 40 1 5.9094 1.7321 7.3876 41 1 4.7651 3.9094 7.2739 42 1 3.0997 4.3344 5.5106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852156115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:59 Heat of formation + Delta-G solvation = -84.735974 kcal Electronic energy + Delta-G solvation = -24274.985486 eV Core-core repulsion = 20832.729186 eV Total energy + Delta-G solvation = -3442.256299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67701 -39.65791 -38.41722 -37.31396 -35.15545 -34.23741 -32.88669 -31.98349 -31.74218 -29.16333 -27.64857 -25.33430 -24.90621 -23.20755 -23.12722 -21.26528 -21.04062 -18.93383 -18.57213 -18.31907 -17.46705 -17.00849 -16.77059 -16.52258 -16.00358 -15.72402 -15.52175 -15.33781 -15.15314 -14.55126 -14.46746 -14.34868 -14.19201 -13.65168 -13.56311 -13.26096 -13.14570 -12.84903 -12.65693 -12.45347 -12.37786 -11.98760 -11.94108 -11.67035 -11.44923 -11.21511 -11.00232 -10.85731 -10.74058 -10.42447 -9.84550 -9.71878 -8.90158 -8.05977 -6.12463 0.30247 0.47725 1.39863 1.43638 1.52958 1.55040 2.25051 2.45737 2.84010 3.13014 3.23135 3.54583 3.84139 3.85522 3.96918 4.12531 4.15111 4.30631 4.48902 4.53501 4.56504 4.62994 4.66393 4.73296 4.78358 4.99786 5.07542 5.14774 5.33430 5.41616 5.53455 5.58955 5.60859 5.69915 5.75034 5.82365 5.83200 6.06778 6.26832 6.32348 6.65249 6.69844 6.82286 6.98037 7.25143 7.54827 8.99094 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.004291 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.547623 B = 6523.368639 C = 6651.084614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.007 0.993 5 C -0.500 4.500 6 H 0.042 0.958 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.682 5.682 14 C 0.044 3.956 15 C 0.173 3.827 16 O -0.538 6.538 17 C 0.534 3.466 18 N -0.830 5.830 19 O -0.568 6.568 20 C -0.129 4.129 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.112 4.112 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.259 0.741 32 H 0.326 0.674 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.392 0.608 36 H 0.412 0.588 37 H 0.413 0.587 38 H 0.136 0.864 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.382 -3.751 19.120 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.176 4.176 3 C 0.115 3.885 4 H 0.025 0.975 5 C -0.539 4.539 6 H 0.061 0.939 7 C -0.179 4.179 8 N -0.556 5.556 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.207 1.207 13 N -0.313 5.313 14 C -0.086 4.086 15 C 0.127 3.873 16 O -0.344 6.344 17 C 0.318 3.682 18 N -0.397 5.397 19 O -0.446 6.446 20 C -0.130 4.130 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.130 4.130 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.241 0.759 36 H 0.243 0.757 37 H 0.246 0.754 38 H 0.154 0.846 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.160 0.840 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.653 -2.624 18.949 19.947 hybrid contribution -0.087 -0.675 -1.122 1.312 sum 5.566 -3.299 17.827 18.964 Atomic orbital electron populations 1.21486 0.96594 0.99609 1.00280 1.21951 0.95899 0.99772 1.00020 1.18991 0.93999 0.89439 0.86079 0.97464 1.21284 1.30251 1.11180 0.91141 0.93950 1.25464 0.95938 0.95874 1.00630 1.69973 1.39866 1.24819 1.20972 0.85707 0.78324 0.78822 0.79977 1.20157 1.20754 1.20660 1.60532 1.03969 1.63394 1.03447 1.22655 0.97481 0.97540 0.90907 1.19714 0.90763 0.84389 0.92385 1.86570 1.39579 1.21099 1.87172 1.20161 0.89070 0.82985 0.75990 1.43533 1.18050 1.09489 1.68617 1.90719 1.46925 1.52514 1.54427 1.20153 0.98958 0.96498 0.97400 1.21306 0.96856 0.96039 0.99233 1.21486 0.97210 1.00616 0.94273 1.21597 0.99399 0.92965 0.99185 1.21428 0.96072 0.98439 0.98197 1.21112 0.98125 0.99111 0.94687 0.94173 0.93495 0.94111 0.94546 0.91629 0.93153 0.85575 0.92924 0.90298 0.75894 0.75690 0.75374 0.84601 0.83166 0.83230 0.83997 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.40 71.98 0.68 -4.38 16 2 C -0.14 -6.04 5.51 30.59 0.17 -5.88 16 3 C 0.22 10.78 2.34 44.17 0.10 10.88 16 4 H 0.01 0.39 7.69 -2.39 -0.02 0.38 16 5 C -0.50 -27.51 7.25 25.60 0.19 -27.33 16 6 H 0.04 2.47 7.81 -2.91 -0.02 2.45 16 7 C 0.02 1.06 5.28 84.65 0.45 1.51 16 8 N -0.92 -51.15 11.38 21.45 0.24 -50.91 16 9 Si 0.94 44.46 29.54 68.60 2.03 46.49 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.68 -28.57 6.02 -495.46 -2.98 -31.55 16 14 C 0.04 1.43 3.90 86.30 0.34 1.77 16 15 C 0.17 5.18 0.84 -12.29 -0.01 5.17 16 16 O -0.54 -18.50 11.36 -129.94 -1.48 -19.98 16 17 C 0.53 17.33 5.74 87.65 0.50 17.83 16 18 N -0.83 -18.44 8.67 -173.53 -1.50 -19.94 16 19 O -0.57 -24.07 17.34 16.01 0.28 -23.79 16 20 C -0.13 -3.03 4.66 -19.87 -0.09 -3.13 16 21 C -0.12 -2.18 8.35 22.27 0.19 -2.00 16 22 C -0.12 -1.76 10.05 22.27 0.22 -1.53 16 23 C -0.11 -1.62 10.05 22.27 0.22 -1.40 16 24 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 25 C -0.11 -2.54 9.35 22.27 0.21 -2.33 16 26 H 0.04 1.52 6.63 -2.39 -0.02 1.50 16 27 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.04 1.91 6.86 -2.39 -0.02 1.90 16 29 H 0.04 1.37 7.54 -2.39 -0.02 1.36 16 30 H 0.07 3.32 6.23 -2.38 -0.01 3.30 16 31 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.33 13.80 5.70 -89.69 -0.51 13.29 16 33 H 0.05 1.45 5.37 -2.39 -0.01 1.43 16 34 H 0.08 2.59 7.91 -2.38 -0.02 2.57 16 35 H 0.39 10.80 9.04 -74.05 -0.67 10.13 16 36 H 0.41 6.93 7.26 -92.71 -0.67 6.26 16 37 H 0.41 7.82 8.93 -92.70 -0.83 6.99 16 38 H 0.14 2.24 6.05 -2.92 -0.02 2.23 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.12 2.91 7.48 -2.91 -0.02 2.89 16 Total: -1.00 -71.75 339.50 -1.63 -73.38 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -1.60 Total: 39.01 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 3.38 Total: -12.70 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.24 Total: -102.40 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.20 Total: -43.77 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -71.75 -1.63 -73.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852156115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.354 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds