Wall clock time and date at job start Tue Mar 31 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47238 * 2 1 4 4 H 1.09000 * 109.47165 * 174.06025 * 3 2 1 5 5 C 1.50699 * 109.47260 * 54.05311 * 3 2 1 6 6 H 1.07991 * 120.00505 * 240.00267 * 5 3 2 7 7 C 1.37876 * 119.99677 * 60.00117 * 5 3 2 8 8 N 1.31516 * 120.00141 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00071 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46997 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46944 * 120.00198 * 9 7 5 12 12 H 1.48499 * 109.47222 * 240.00017 * 9 7 5 13 13 N 1.46902 * 109.47146 * 294.05332 * 3 2 1 14 14 C 1.46895 * 111.00137 * 275.45270 * 13 3 2 15 15 C 1.53005 * 109.46872 * 176.87612 * 14 13 3 16 16 O 1.42896 * 109.46924 * 299.99261 * 15 14 13 17 17 C 1.50696 * 109.47207 * 59.99805 * 15 14 13 18 18 N 1.34774 * 120.00239 * 60.00374 * 17 15 14 19 19 O 1.21285 * 119.99630 * 239.99335 * 17 15 14 20 20 C 1.50703 * 109.46782 * 179.97438 * 15 14 13 21 21 C 1.38237 * 120.00303 * 329.72041 * 20 15 14 22 22 C 1.38232 * 119.99792 * 179.80936 * 21 20 15 23 23 C 1.38227 * 120.00389 * 0.40435 * 22 21 20 24 24 C 1.38235 * 119.99910 * 359.84875 * 23 22 21 25 25 C 1.38231 * 120.00075 * 359.96244 * 24 23 22 26 26 H 1.09008 * 109.47034 * 298.61701 * 1 2 3 27 27 H 1.08996 * 109.47444 * 178.61773 * 1 2 3 28 28 H 1.09000 * 109.47261 * 58.61420 * 1 2 3 29 29 H 1.09004 * 109.47136 * 120.00152 * 2 1 3 30 30 H 1.09002 * 109.46918 * 240.00190 * 2 1 3 31 31 H 0.97004 * 120.00550 * 179.97438 * 8 7 5 32 32 H 1.00905 * 110.99415 * 39.40342 * 13 3 2 33 33 H 1.09005 * 109.47061 * 296.86882 * 14 13 3 34 34 H 1.08997 * 109.47274 * 56.87397 * 14 13 3 35 35 H 0.96703 * 114.00647 * 300.00613 * 16 15 14 36 36 H 0.96999 * 120.00104 * 359.97438 * 18 17 15 37 37 H 0.97005 * 119.99686 * 179.97438 * 18 17 15 38 38 H 1.08003 * 119.99752 * 0.02562 * 21 20 15 39 39 H 1.08009 * 119.99652 * 180.23047 * 22 21 20 40 40 H 1.08001 * 120.00178 * 179.83034 * 23 22 21 41 41 H 1.07999 * 119.99749 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.00351 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1063 5 6 1.4211 2.1942 1.1502 6 1 0.8144 3.0672 0.9608 7 6 1.6295 1.7672 2.4445 8 7 2.3680 0.7037 2.6753 9 14 0.8630 2.6993 3.8704 10 1 0.0833 3.8499 3.3476 11 1 -0.0388 1.7933 4.6263 12 1 1.9347 3.1951 4.7709 13 7 1.6710 2.0923 -1.2647 14 6 2.6564 1.7997 -2.3141 15 6 2.1990 2.4271 -3.6325 16 8 0.9313 1.8826 -4.0045 17 6 2.0745 3.9192 -3.4622 18 7 3.1512 4.6496 -3.1105 19 8 1.0053 4.4629 -3.6419 20 6 3.2103 2.1274 -4.7089 21 6 4.5444 1.9746 -4.3807 22 6 5.4714 1.6959 -5.3675 23 6 5.0656 1.5782 -6.6836 24 6 3.7323 1.7361 -7.0126 25 6 2.8047 2.0110 -6.0253 26 1 -0.3633 0.4922 0.9022 27 1 -0.3634 -1.0273 -0.0248 28 1 -0.3634 0.5352 -0.8773 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.5150 0.4034 3.5859 32 1 0.7433 1.8202 -1.5538 33 1 3.6235 2.2151 -2.0304 34 1 2.7465 0.7205 -2.4372 35 1 0.9368 0.9239 -4.1314 36 1 4.0062 4.2147 -2.9667 37 1 3.0710 5.6101 -3.0013 38 1 4.8619 2.0696 -3.3527 39 1 6.5132 1.5728 -5.1105 40 1 5.7903 1.3631 -7.4550 41 1 3.4153 1.6446 -8.0409 42 1 1.7630 2.1349 -6.2823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852156116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:02 Heat of formation + Delta-G solvation = -86.587681 kcal Electronic energy + Delta-G solvation = -24239.122931 eV Core-core repulsion = 20796.786336 eV Total energy + Delta-G solvation = -3442.336595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63342 -39.59504 -38.49382 -37.30977 -35.08429 -34.22054 -32.88547 -31.97854 -31.73608 -29.16078 -27.66795 -25.31648 -24.84701 -23.16847 -23.13284 -21.20052 -21.07675 -18.82744 -18.71308 -18.30836 -17.46785 -16.93154 -16.76512 -16.42215 -16.08083 -15.76429 -15.35082 -15.19344 -15.14250 -14.87388 -14.37423 -14.21736 -14.06589 -13.77033 -13.62684 -13.57526 -12.84954 -12.83003 -12.65000 -12.44137 -12.40788 -11.97310 -11.90530 -11.77075 -11.43311 -11.19248 -10.96934 -10.88165 -10.62229 -10.42487 -9.84627 -9.71079 -8.94023 -8.05932 -6.12537 0.30392 0.47760 1.39604 1.43574 1.54522 1.67041 2.31535 2.45621 2.83278 3.16412 3.23445 3.51789 3.83509 3.86229 4.01757 4.14545 4.14956 4.31773 4.48783 4.54062 4.58063 4.65095 4.67988 4.72694 4.78354 5.00031 5.11503 5.14938 5.34145 5.43709 5.53753 5.58255 5.60972 5.69101 5.75603 5.83795 5.90995 6.06708 6.32281 6.36795 6.65154 6.67085 6.81555 6.98816 7.35468 7.54946 8.99301 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.004321 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.943215 B = 6478.759413 C = 6691.498983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 C 0.225 3.775 4 H 0.008 0.992 5 C -0.499 4.499 6 H 0.042 0.958 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.686 5.686 14 C 0.043 3.957 15 C 0.173 3.827 16 O -0.543 6.543 17 C 0.549 3.451 18 N -0.829 5.829 19 O -0.577 6.577 20 C -0.129 4.129 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.111 4.111 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.259 0.741 32 H 0.334 0.666 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.393 0.607 36 H 0.410 0.590 37 H 0.410 0.590 38 H 0.134 0.866 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.583 -0.607 -17.980 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.176 4.176 3 C 0.116 3.884 4 H 0.026 0.974 5 C -0.537 4.537 6 H 0.060 0.940 7 C -0.179 4.179 8 N -0.556 5.556 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.207 1.207 13 N -0.318 5.318 14 C -0.087 4.087 15 C 0.128 3.872 16 O -0.350 6.350 17 C 0.334 3.666 18 N -0.394 5.394 19 O -0.456 6.456 20 C -0.130 4.130 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.129 4.129 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.243 0.757 36 H 0.241 0.759 37 H 0.242 0.758 38 H 0.152 0.848 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.161 0.839 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.994 0.695 -17.772 19.499 hybrid contribution -0.233 -0.908 1.129 1.467 sum 7.761 -0.213 -16.643 18.365 Atomic orbital electron populations 1.21458 0.96491 0.99231 1.00581 1.21944 0.96040 1.00018 0.99640 1.18945 0.94096 0.89303 0.86022 0.97362 1.21250 1.30200 1.11177 0.91120 0.93953 1.25459 0.95972 0.95859 1.00565 1.69985 1.40129 1.24955 1.20556 0.85715 0.78361 0.78813 0.79977 1.20158 1.20807 1.20672 1.60676 1.04922 1.63183 1.03047 1.22649 0.97430 0.98479 0.90120 1.19741 0.83930 0.90978 0.92599 1.86594 1.29464 1.27755 1.91188 1.19896 0.83633 0.88633 0.74483 1.43424 1.12067 1.11982 1.71897 1.90685 1.29121 1.73521 1.52267 1.20122 0.94534 1.04087 0.94270 1.21300 0.91865 0.99456 1.00816 1.21479 1.00522 0.98864 0.92767 1.21595 0.96193 0.98178 0.97147 1.21431 0.93435 0.99387 0.99852 1.21112 1.00600 0.99023 0.92196 0.94333 0.93705 0.93769 0.91818 0.95048 0.93175 0.84606 0.89610 0.93799 0.75679 0.75913 0.75752 0.84803 0.83275 0.83236 0.83903 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.39 71.98 0.68 -4.39 16 2 C -0.14 -6.17 5.50 30.59 0.17 -6.00 16 3 C 0.22 10.80 2.33 44.17 0.10 10.90 16 4 H 0.01 0.44 7.85 -2.39 -0.02 0.42 16 5 C -0.50 -27.19 7.35 25.60 0.19 -27.00 16 6 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16 7 C 0.02 1.08 5.22 84.65 0.44 1.53 16 8 N -0.92 -51.06 11.39 21.45 0.24 -50.81 16 9 Si 0.94 44.19 29.54 68.60 2.03 46.21 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 N -0.69 -28.41 5.83 -495.45 -2.89 -31.30 16 14 C 0.04 1.39 3.85 86.31 0.33 1.72 16 15 C 0.17 5.08 0.84 -12.28 -0.01 5.07 16 16 O -0.54 -16.84 10.78 -129.94 -1.40 -18.24 16 17 C 0.55 18.91 6.41 87.66 0.56 19.47 16 18 N -0.83 -21.40 8.67 -173.54 -1.50 -22.91 16 19 O -0.58 -25.41 17.34 15.99 0.28 -25.14 16 20 C -0.13 -3.00 4.66 -19.86 -0.09 -3.09 16 21 C -0.12 -2.24 8.35 22.27 0.19 -2.05 16 22 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 23 C -0.11 -1.60 10.05 22.27 0.22 -1.38 16 24 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 25 C -0.11 -2.43 9.35 22.27 0.21 -2.22 16 26 H 0.04 1.82 7.04 -2.38 -0.02 1.80 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.73 6.43 -2.39 -0.02 1.72 16 29 H 0.06 3.27 6.25 -2.38 -0.01 3.26 16 30 H 0.03 1.25 7.27 -2.39 -0.02 1.23 16 31 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.33 14.23 5.92 -89.69 -0.53 13.70 16 33 H 0.09 2.55 5.90 -2.38 -0.01 2.54 16 34 H 0.04 1.35 7.26 -2.39 -0.02 1.33 16 35 H 0.39 8.97 9.04 -74.05 -0.67 8.30 16 36 H 0.41 8.37 7.25 -92.71 -0.67 7.70 16 37 H 0.41 9.48 8.93 -92.70 -0.83 8.65 16 38 H 0.13 2.37 6.05 -2.91 -0.02 2.35 16 39 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 40 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.12 2.81 7.49 -2.91 -0.02 2.79 16 Total: -1.00 -70.98 339.35 -1.43 -72.41 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -1.62 Total: 40.63 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 3.43 Total: -10.85 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -4.15 Total: -105.02 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -1.12 Total: -43.38 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.98 -1.43 -72.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852156116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.177 kcal (2) G-P(sol) polarization free energy of solvation -70.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds