Wall clock time and date at job start Tue Mar 31 2020 03:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00260 * 2 1 4 4 H 1.48506 * 109.46823 * 239.99889 * 3 2 1 5 5 H 1.48492 * 109.47327 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47130 * 120.00175 * 3 2 1 7 7 C 1.38815 * 119.99503 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99834 * 158.61278 * 7 2 1 9 9 N 1.36940 * 120.00319 * 338.61324 * 7 2 1 10 10 C 1.46506 * 119.99541 * 324.51364 * 9 7 2 11 11 C 1.50693 * 109.47008 * 270.27293 * 10 9 7 12 12 C 1.35348 * 126.75243 * 95.00276 * 11 10 9 13 13 N 1.35309 * 106.17814 * 179.97438 * 12 11 10 14 14 C 1.46505 * 125.87251 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47183 * 124.99751 * 14 13 12 16 16 H 1.09000 * 110.27592 * 55.64236 * 15 14 13 17 17 C 1.54941 * 110.30904 * 177.83706 * 15 14 13 18 18 C 1.55306 * 100.94409 * 155.36041 * 17 15 14 19 19 C 1.54384 * 102.25072 * 325.86808 * 18 17 15 20 20 O 1.43231 * 107.58892 * 21.35234 * 19 18 17 21 21 N 1.28722 * 108.26561 * 0.02562 * 13 12 11 22 22 N 1.28635 * 110.17175 * 359.71827 * 21 13 12 23 23 C 1.46495 * 119.99899 * 144.78545 * 9 7 2 24 24 C 1.52995 * 117.50000 * 2.96569 * 23 9 7 25 25 C 1.52997 * 117.50459 * 294.29916 * 23 9 7 26 26 H 0.97004 * 119.98960 * 355.49836 * 1 2 3 27 27 H 1.08997 * 109.47270 * 30.27334 * 10 9 7 28 28 H 1.08995 * 109.46718 * 150.27445 * 10 9 7 29 29 H 1.08003 * 126.91200 * 0.03516 * 12 11 10 30 30 H 1.08990 * 109.47458 * 245.00075 * 14 13 12 31 31 H 1.09002 * 109.46943 * 5.00316 * 14 13 12 32 32 H 1.08999 * 111.12600 * 273.27851 * 17 15 14 33 33 H 1.08998 * 111.12742 * 37.43877 * 17 15 14 34 34 H 1.09000 * 110.84929 * 207.67621 * 18 17 15 35 35 H 1.08999 * 111.02088 * 84.13451 * 18 17 15 36 36 H 1.09005 * 109.82726 * 261.83922 * 19 18 17 37 37 H 1.08999 * 109.83041 * 140.87086 * 19 18 17 38 38 H 1.09007 * 115.54349 * 148.62983 * 23 9 7 39 39 H 1.08997 * 117.50165 * 359.97438 * 24 23 9 40 40 H 1.09004 * 117.49860 * 145.01901 * 24 23 9 41 41 H 1.08990 * 117.50082 * 214.98298 * 25 23 9 42 42 H 1.09003 * 117.49234 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0345 -1.2346 -0.3405 9 7 1.3962 -2.3471 0.4335 10 6 0.4365 -2.2904 1.5390 11 6 1.1634 -2.4796 2.8454 12 6 1.6192 -1.5054 3.6670 13 7 2.2013 -2.1361 4.7131 14 6 2.8382 -1.4860 5.8611 15 6 2.2060 -2.0025 7.1552 16 1 2.2724 -3.0896 7.2003 17 6 2.9028 -1.3676 8.3848 18 6 1.7776 -1.4758 9.4498 19 6 0.5033 -1.2750 8.6016 20 8 0.8351 -1.5826 7.2426 21 7 2.0992 -3.4056 4.5263 22 7 1.4803 -3.6434 3.4239 23 6 1.7034 -3.6294 -0.2048 24 6 2.7694 -3.6347 -1.3023 25 6 1.2929 -3.8066 -1.6680 26 1 -0.4849 0.8376 0.0659 27 1 -0.0623 -1.3213 1.5378 28 1 -0.3044 -3.0806 1.4178 29 1 1.5345 -0.4390 3.5182 30 1 3.9042 -1.7129 5.8618 31 1 2.6963 -0.4075 5.7928 32 1 3.7799 -1.9434 8.6802 33 1 3.1645 -0.3268 8.1942 34 1 1.8740 -0.6884 10.1974 35 1 1.7788 -2.4584 9.9214 36 1 0.1692 -0.2401 8.6755 37 1 -0.2827 -1.9444 8.9510 38 1 1.6445 -4.5034 0.4439 39 1 3.2418 -2.6841 -1.5498 40 1 3.4115 -4.5125 -1.3761 41 1 0.9643 -4.7972 -1.9820 42 1 0.7937 -2.9692 -2.1555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876636049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:06 Heat of formation + Delta-G solvation = 104.193820 kcal Electronic energy + Delta-G solvation = -23666.230673 eV Core-core repulsion = 20264.459736 eV Total energy + Delta-G solvation = -3401.770937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42900 -39.67687 -36.91248 -34.59665 -33.49457 -32.46288 -31.29420 -30.38267 -29.51121 -26.37769 -25.73362 -23.61730 -22.38346 -21.88527 -21.32199 -21.09365 -20.06363 -19.55981 -17.38907 -16.80176 -16.36192 -16.04867 -15.45794 -15.23936 -15.00214 -14.55157 -14.08072 -13.82126 -13.73625 -13.27099 -13.05266 -12.77729 -12.44647 -12.12005 -11.85261 -11.72573 -11.58900 -11.39322 -11.21363 -10.97471 -10.78897 -10.74029 -10.49794 -10.22699 -9.99850 -9.82770 -9.74947 -9.55476 -9.30277 -9.18125 -8.47038 -8.25747 -6.57225 -5.80707 -3.39261 2.34229 2.81431 3.31063 3.39118 3.39389 3.46281 3.49358 4.07972 4.26557 4.44717 4.51614 4.72045 4.80234 4.94084 5.03452 5.04544 5.13471 5.26193 5.31784 5.38037 5.40821 5.46383 5.51514 5.61278 5.76089 5.95989 6.08217 6.13274 6.24906 6.35736 6.40573 6.59503 6.74369 6.77291 7.01124 7.11481 7.17938 7.28430 7.30928 7.60815 7.79908 8.47411 9.14449 9.32130 9.77672 10.35600 11.16641 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.004391 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.505193 B = 6375.033856 C = 7259.011980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.011 3.989 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.542 5.542 10 C 0.220 3.780 11 C -0.006 4.006 12 C -0.037 4.037 13 N -0.298 5.298 14 C 0.123 3.877 15 C 0.069 3.931 16 H 0.089 0.911 17 C -0.149 4.149 18 C -0.154 4.154 19 C 0.049 3.951 20 O -0.371 6.371 21 N -0.111 5.111 22 N -0.273 5.273 23 C 0.125 3.875 24 C -0.198 4.198 25 C -0.219 4.219 26 H 0.256 0.744 27 H 0.117 0.883 28 H 0.046 0.954 29 H 0.179 0.821 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.300 -0.158 17.054 17.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.189 4.189 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.081 0.919 9 N -0.258 5.258 10 C 0.092 3.908 11 C -0.146 4.146 12 C -0.188 4.188 13 N -0.092 5.092 14 C 0.000 4.000 15 C 0.011 3.989 16 H 0.107 0.893 17 C -0.187 4.187 18 C -0.192 4.192 19 C -0.027 4.027 20 O -0.291 6.291 21 N -0.090 5.090 22 N -0.141 5.141 23 C 0.016 3.984 24 C -0.236 4.236 25 C -0.260 4.260 26 H 0.066 0.934 27 H 0.134 0.866 28 H 0.065 0.935 29 H 0.196 0.804 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.335 -1.364 17.387 17.971 hybrid contribution 0.576 2.146 -0.100 2.224 sum 4.911 0.782 17.287 17.988 Atomic orbital electron populations 1.70016 1.05339 1.26191 1.51035 1.25082 0.94955 0.98492 1.00365 0.86516 0.79252 0.83617 0.78352 1.20652 1.21491 1.21088 1.19046 0.94143 0.85572 1.39349 0.91851 1.43293 1.48843 1.01766 1.31912 1.19448 0.89200 1.03805 0.78393 1.23692 1.03287 0.87578 1.00001 1.23357 1.04294 1.01127 0.89992 1.47002 1.39365 1.06019 1.16840 1.22106 0.97402 0.98357 0.82129 1.23320 0.82347 0.99927 0.93297 0.89310 1.23268 0.98932 1.02394 0.94130 1.23107 0.94315 1.03306 0.98437 1.23143 0.97014 1.00829 0.81736 1.88549 1.26826 1.87386 1.26308 1.78038 1.19437 0.96147 1.15338 1.74947 1.12194 1.25425 1.01500 1.21225 0.99914 0.90210 0.87008 1.23026 0.91949 1.01694 1.06974 1.23345 0.97280 1.00658 1.04705 0.93379 0.86589 0.93547 0.80369 0.87688 0.87563 0.89232 0.89786 0.89793 0.90307 0.91180 0.91337 0.89031 0.88638 0.90880 0.91168 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.23 11.31 55.49 0.63 -23.60 16 2 C 0.01 0.29 4.98 -17.43 -0.09 0.20 16 3 Si 0.89 20.66 29.61 -169.99 -5.03 15.63 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.25 -6.69 8.62 -15.06 -0.13 -6.82 16 8 H 0.06 1.71 6.56 -52.48 -0.34 1.37 16 9 N -0.54 -13.68 2.76 -167.03 -0.46 -14.14 16 10 C 0.22 5.32 5.90 -5.19 -0.03 5.29 16 11 C -0.01 -0.13 6.83 -82.78 -0.57 -0.70 16 12 C -0.04 -0.75 11.50 -17.05 -0.20 -0.95 16 13 N -0.30 -5.28 3.42 -61.26 -0.21 -5.49 16 14 C 0.12 1.47 6.17 -4.04 -0.02 1.45 16 15 C 0.07 0.77 3.51 -25.71 -0.09 0.68 16 16 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 17 C -0.15 -1.05 6.57 -24.48 -0.16 -1.21 16 18 C -0.15 -1.03 7.02 -24.78 -0.17 -1.20 16 19 C 0.05 0.46 7.79 37.88 0.30 0.76 16 20 O -0.37 -5.01 11.02 -35.23 -0.39 -5.39 16 21 N -0.11 -2.26 12.86 60.35 0.78 -1.48 16 22 N -0.27 -6.20 12.41 33.29 0.41 -5.79 16 23 C 0.13 2.87 6.56 -67.94 -0.45 2.43 16 24 C -0.20 -4.16 9.80 -26.69 -0.26 -4.42 16 25 C -0.22 -4.67 10.37 -26.69 -0.28 -4.95 16 26 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 27 H 0.12 3.01 5.35 -51.93 -0.28 2.73 16 28 H 0.05 1.11 8.07 -51.93 -0.42 0.69 16 29 H 0.18 3.33 8.06 -52.48 -0.42 2.90 16 30 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 1.10 8.07 -51.93 -0.42 0.68 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 39 H 0.10 2.14 6.38 -51.93 -0.33 1.81 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -31.70 348.65 -7.58 -39.28 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.41 Total: 5.17 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -2.15 Total: -9.44 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 1.15 Total: -50.50 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.39 Total: -5.39 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.70 -7.58 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876636049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.477 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds