Wall clock time and date at job start Tue Mar 31 2020 03:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00260 * 2 1 4 4 H 1.48506 * 109.46823 * 239.99889 * 3 2 1 5 5 H 1.48492 * 109.47327 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47130 * 120.00175 * 3 2 1 7 7 C 1.38815 * 119.99503 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99834 * 158.61278 * 7 2 1 9 9 N 1.36940 * 120.00319 * 338.61324 * 7 2 1 10 10 C 1.46506 * 119.99541 * 324.51364 * 9 7 2 11 11 C 1.50693 * 109.47008 * 270.27293 * 10 9 7 12 12 C 1.35348 * 126.75243 * 95.00276 * 11 10 9 13 13 N 1.35309 * 106.17814 * 179.97438 * 12 11 10 14 14 C 1.46505 * 125.87251 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47183 * 124.99751 * 14 13 12 16 16 H 1.09000 * 110.27592 * 55.64236 * 15 14 13 17 17 C 1.54941 * 110.30904 * 177.83706 * 15 14 13 18 18 C 1.55306 * 100.94409 * 155.36041 * 17 15 14 19 19 C 1.54384 * 102.25072 * 325.86808 * 18 17 15 20 20 O 1.43231 * 107.58892 * 21.35234 * 19 18 17 21 21 N 1.28722 * 108.26561 * 0.02562 * 13 12 11 22 22 N 1.28635 * 110.17175 * 359.71827 * 21 13 12 23 23 C 1.46495 * 119.99899 * 144.78545 * 9 7 2 24 24 C 1.52995 * 117.50000 * 2.96569 * 23 9 7 25 25 C 1.52997 * 117.50459 * 294.29916 * 23 9 7 26 26 H 0.97004 * 119.98960 * 355.49836 * 1 2 3 27 27 H 1.08997 * 109.47270 * 30.27334 * 10 9 7 28 28 H 1.08995 * 109.46718 * 150.27445 * 10 9 7 29 29 H 1.08003 * 126.91200 * 0.03516 * 12 11 10 30 30 H 1.08990 * 109.47458 * 245.00075 * 14 13 12 31 31 H 1.09002 * 109.46943 * 5.00316 * 14 13 12 32 32 H 1.08999 * 111.12600 * 273.27851 * 17 15 14 33 33 H 1.08998 * 111.12742 * 37.43877 * 17 15 14 34 34 H 1.09000 * 110.84929 * 207.67621 * 18 17 15 35 35 H 1.08999 * 111.02088 * 84.13451 * 18 17 15 36 36 H 1.09005 * 109.82726 * 261.83922 * 19 18 17 37 37 H 1.08999 * 109.83041 * 140.87086 * 19 18 17 38 38 H 1.09007 * 115.54349 * 148.62983 * 23 9 7 39 39 H 1.08997 * 117.50165 * 359.97438 * 24 23 9 40 40 H 1.09004 * 117.49860 * 145.01901 * 24 23 9 41 41 H 1.08990 * 117.50082 * 214.98298 * 25 23 9 42 42 H 1.09003 * 117.49234 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0345 -1.2346 -0.3405 9 7 1.3962 -2.3471 0.4335 10 6 0.4365 -2.2904 1.5390 11 6 1.1634 -2.4796 2.8454 12 6 1.6192 -1.5054 3.6670 13 7 2.2013 -2.1361 4.7131 14 6 2.8382 -1.4860 5.8611 15 6 2.2060 -2.0025 7.1552 16 1 2.2724 -3.0896 7.2003 17 6 2.9028 -1.3676 8.3848 18 6 1.7776 -1.4758 9.4498 19 6 0.5033 -1.2750 8.6016 20 8 0.8351 -1.5826 7.2426 21 7 2.0992 -3.4056 4.5263 22 7 1.4803 -3.6434 3.4239 23 6 1.7034 -3.6294 -0.2048 24 6 2.7694 -3.6347 -1.3023 25 6 1.2929 -3.8066 -1.6680 26 1 -0.4849 0.8376 0.0659 27 1 -0.0623 -1.3213 1.5378 28 1 -0.3044 -3.0806 1.4178 29 1 1.5345 -0.4390 3.5182 30 1 3.9042 -1.7129 5.8618 31 1 2.6963 -0.4075 5.7928 32 1 3.7799 -1.9434 8.6802 33 1 3.1645 -0.3268 8.1942 34 1 1.8740 -0.6884 10.1974 35 1 1.7788 -2.4584 9.9214 36 1 0.1692 -0.2401 8.6755 37 1 -0.2827 -1.9444 8.9510 38 1 1.6445 -4.5034 0.4439 39 1 3.2418 -2.6841 -1.5498 40 1 3.4115 -4.5125 -1.3761 41 1 0.9643 -4.7972 -1.9820 42 1 0.7937 -2.9692 -2.1555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876636049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:05 Heat of formation + Delta-G solvation = 84.626359 kcal Electronic energy + Delta-G solvation = -23667.079182 eV Core-core repulsion = 20264.459736 eV Total energy + Delta-G solvation = -3402.619446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.99243 -40.47670 -38.73440 -35.99641 -35.25638 -33.23095 -33.08629 -31.54202 -31.18916 -27.82484 -27.14838 -25.49030 -23.40100 -23.04071 -22.66611 -22.52017 -21.57682 -21.26032 -18.58650 -18.18958 -17.58972 -17.35950 -17.17253 -16.63086 -16.32352 -15.87325 -15.69180 -15.45728 -14.86166 -14.58077 -14.30722 -14.00968 -13.69588 -13.62927 -13.22165 -12.88062 -12.72964 -12.61596 -12.57664 -12.41531 -12.26241 -12.18892 -12.04918 -11.81815 -11.76073 -11.53006 -11.35799 -10.96494 -10.87440 -10.54160 -10.45220 -9.91928 -8.53864 -7.79507 -5.43060 0.80448 1.48172 1.50628 1.56067 1.58242 1.74222 2.53637 2.71381 3.17157 3.38346 3.41377 3.52363 3.60807 3.73168 3.85278 3.95335 4.10568 4.20451 4.30561 4.31930 4.36532 4.36908 4.46801 4.52611 4.61208 4.76143 4.78308 4.87915 4.92249 4.93057 4.98056 5.05939 5.17168 5.21522 5.34864 5.42453 5.54149 5.64810 5.73786 5.82365 6.00852 6.47010 7.14824 7.69777 7.82530 8.38330 9.15588 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.004391 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.505193 B = 6375.033856 C = 7259.011980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.027 4.027 3 Si 0.953 3.047 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.261 4.261 8 H 0.056 0.944 9 N -0.556 5.556 10 C 0.229 3.771 11 C -0.027 4.027 12 C -0.038 4.038 13 N -0.280 5.280 14 C 0.107 3.893 15 C 0.066 3.934 16 H 0.071 0.929 17 C -0.137 4.137 18 C -0.146 4.146 19 C 0.038 3.962 20 O -0.411 6.411 21 N -0.113 5.113 22 N -0.303 5.303 23 C 0.100 3.900 24 C -0.181 4.181 25 C -0.209 4.209 26 H 0.255 0.745 27 H 0.098 0.902 28 H 0.035 0.965 29 H 0.192 0.808 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 0.583 18.745 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.224 4.224 3 Si 0.780 3.220 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.391 4.391 8 H 0.073 0.927 9 N -0.272 5.272 10 C 0.101 3.899 11 C -0.167 4.167 12 C -0.189 4.189 13 N -0.075 5.075 14 C -0.013 4.013 15 C 0.008 3.992 16 H 0.089 0.911 17 C -0.175 4.175 18 C -0.184 4.184 19 C -0.038 4.038 20 O -0.331 6.331 21 N -0.092 5.092 22 N -0.170 5.170 23 C -0.008 4.008 24 C -0.219 4.219 25 C -0.249 4.249 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.054 0.946 29 H 0.209 0.791 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.287 -0.642 19.112 20.130 hybrid contribution -0.045 1.883 -0.558 1.964 sum 6.243 1.241 18.554 19.616 Atomic orbital electron populations 1.70132 1.06602 1.26712 1.52030 1.25699 0.95534 1.01016 1.00180 0.85587 0.78029 0.79848 0.78489 1.20815 1.21574 1.19809 1.19141 0.93896 0.86530 1.39528 0.92671 1.43418 1.48930 1.02209 1.32686 1.19139 0.89122 1.02222 0.79422 1.23412 1.04600 0.88584 1.00140 1.23459 1.03933 1.01324 0.90193 1.47378 1.37674 1.05146 1.17280 1.22753 0.98712 0.99274 0.80521 1.23371 0.82191 0.99233 0.94405 0.91096 1.23277 0.99222 1.03225 0.91765 1.23110 0.92458 1.04468 0.98343 1.23352 0.98476 1.01181 0.80741 1.88511 1.28304 1.87549 1.28772 1.77920 1.19240 0.97492 1.14582 1.74885 1.13629 1.25985 1.02552 1.21391 1.02025 0.89637 0.87737 1.23025 0.91882 1.02189 1.04845 1.23253 0.97567 1.01112 1.02991 0.93566 0.88449 0.94638 0.79111 0.84752 0.85491 0.87160 0.88241 0.87473 0.89886 0.90401 0.91729 0.88752 0.90320 0.87661 0.88140 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.95 11.31 21.65 0.24 -50.70 16 2 C -0.03 -1.41 4.98 84.86 0.42 -0.99 16 3 Si 0.95 42.34 29.61 68.60 2.03 44.37 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.26 -14.06 8.62 84.03 0.72 -13.34 16 8 H 0.06 3.02 6.56 -2.91 -0.02 3.00 16 9 N -0.56 -28.62 2.76 -682.36 -1.88 -30.50 16 10 C 0.23 11.49 5.90 85.63 0.50 11.99 16 11 C -0.03 -1.25 6.83 41.59 0.28 -0.96 16 12 C -0.04 -1.50 11.50 83.49 0.96 -0.54 16 13 N -0.28 -9.65 3.42 -347.73 -1.19 -10.84 16 14 C 0.11 2.33 6.17 86.38 0.53 2.86 16 15 C 0.07 1.34 3.51 31.26 0.11 1.45 16 16 H 0.07 1.67 8.05 -2.39 -0.02 1.65 16 17 C -0.14 -1.45 6.57 32.05 0.21 -1.24 16 18 C -0.15 -1.52 7.02 31.86 0.22 -1.30 16 19 C 0.04 0.67 7.79 72.45 0.56 1.23 16 20 O -0.41 -10.74 11.02 -148.98 -1.64 -12.39 16 21 N -0.11 -4.59 12.86 37.02 0.48 -4.12 16 22 N -0.30 -13.99 12.41 -48.61 -0.60 -14.59 16 23 C 0.10 4.62 6.56 44.99 0.30 4.92 16 24 C -0.18 -7.43 9.80 30.62 0.30 -7.13 16 25 C -0.21 -8.82 10.37 30.62 0.32 -8.50 16 26 H 0.25 13.72 8.32 -92.71 -0.77 12.94 16 27 H 0.10 5.25 5.35 -2.39 -0.01 5.24 16 28 H 0.04 1.78 8.07 -2.39 -0.02 1.76 16 29 H 0.19 7.01 8.06 -2.91 -0.02 6.98 16 30 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.13 2.25 8.07 -2.39 -0.02 2.23 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.79 8.06 -2.39 -0.02 0.77 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 4.25 8.14 -2.38 -0.02 4.23 16 39 H 0.08 3.51 6.38 -2.39 -0.02 3.49 16 40 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16 41 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 42 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -69.90 348.65 3.89 -66.01 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 1.01 Total: 24.31 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 5.45 Total: -11.55 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -2.95 Total: -110.76 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.64 Total: -12.39 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -69.90 3.89 -66.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876636049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.637 kcal (2) G-P(sol) polarization free energy of solvation -69.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds