Wall clock time and date at job start Tue Mar 31 2020 03:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47244 * 2 1 4 4 C 1.46895 * 111.00133 * 71.93921 * 3 2 1 5 5 C 1.50701 * 109.47246 * 60.97649 * 4 3 2 6 6 O 1.21283 * 119.99973 * 5.64066 * 5 4 3 7 7 N 1.34777 * 119.99890 * 185.63610 * 5 4 3 8 8 C 1.37099 * 119.99741 * 180.02562 * 7 5 4 9 9 H 1.07999 * 119.99829 * 0.02562 * 8 7 5 10 10 C 1.38954 * 120.00071 * 180.02562 * 8 7 5 11 11 N 1.31406 * 119.99662 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00246 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46868 * 59.99115 * 12 10 8 14 14 H 1.48496 * 109.47452 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47053 * 299.99594 * 12 10 8 16 16 C 1.46898 * 111.00076 * 195.89174 * 3 2 1 17 17 H 1.08996 * 109.47398 * 301.14700 * 16 3 2 18 18 C 1.53001 * 109.47197 * 181.14629 * 16 3 2 19 19 O 1.42905 * 109.47508 * 296.49164 * 18 16 3 20 20 C 1.50704 * 109.47003 * 61.15002 * 16 3 2 21 21 C 1.38236 * 120.00021 * 39.72690 * 20 16 3 22 22 C 1.38234 * 119.99593 * 179.78697 * 21 20 16 23 23 C 1.38239 * 120.00451 * 0.44086 * 22 21 20 24 24 C 1.38234 * 119.99439 * 359.81346 * 23 22 21 25 25 C 1.38234 * 119.99889 * 219.99599 * 20 16 3 26 26 H 1.08996 * 109.47102 * 64.80338 * 1 2 3 27 27 H 1.09000 * 109.46980 * 184.80804 * 1 2 3 28 28 H 1.08995 * 109.46663 * 304.80228 * 1 2 3 29 29 H 1.09009 * 109.46798 * 240.00031 * 2 1 3 30 30 H 1.08996 * 109.47184 * 120.00376 * 2 1 3 31 31 H 1.09002 * 109.47510 * 180.97866 * 4 3 2 32 32 H 1.09003 * 109.47014 * 300.97914 * 4 3 2 33 33 H 0.96999 * 120.00100 * 0.02562 * 7 5 4 34 34 H 0.97001 * 119.99733 * 180.02562 * 11 10 8 35 35 H 1.09004 * 109.47462 * 176.49153 * 18 16 3 36 36 H 1.09002 * 109.47224 * 56.49549 * 18 16 3 37 37 H 0.96696 * 113.99764 * 179.97438 * 19 18 16 38 38 H 1.07992 * 119.99930 * 359.97438 * 21 20 16 39 39 H 1.08001 * 119.99828 * 180.26988 * 22 21 20 40 40 H 1.07994 * 120.00260 * 179.82843 * 23 22 21 41 41 H 1.08005 * 119.99925 * 180.02562 * 24 23 22 42 42 H 1.08004 * 120.00286 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7943 2.0230 1.3038 5 6 2.5442 1.2663 2.3697 6 8 3.2823 0.3549 2.0608 7 7 2.3945 1.6024 3.6663 8 6 3.0771 0.9143 4.6360 9 1 3.7349 0.1032 4.3608 10 6 2.9225 1.2605 5.9728 11 7 2.1224 2.2477 6.3075 12 14 3.8530 0.3234 7.2939 13 1 5.3132 0.4520 7.0564 14 1 3.5175 0.8837 8.6276 15 1 3.4684 -1.1102 7.2479 16 6 3.4387 1.4416 -0.3755 17 1 4.0241 0.8464 0.3253 18 6 3.9190 2.8937 -0.3366 19 8 3.2080 3.6571 -1.3133 20 6 3.6121 0.8923 -1.7682 21 6 2.6812 1.1847 -2.7473 22 6 2.8426 0.6845 -4.0258 23 6 3.9301 -0.1156 -4.3229 24 6 4.8582 -0.4122 -3.3423 25 6 4.6991 0.0916 -2.0649 26 1 -0.3633 0.4375 -0.9298 27 1 -0.3633 -1.0241 0.0861 28 1 -0.3632 0.5865 0.8438 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.1503 3.0528 1.2708 32 1 0.7288 2.0141 1.5334 33 1 1.8040 2.3312 3.9134 34 1 2.0148 2.4896 7.2407 35 1 4.9865 2.9294 -0.5544 36 1 3.7362 3.3105 0.6539 37 1 3.4616 4.5897 -1.3445 38 1 1.8295 1.8064 -2.5142 39 1 2.1177 0.9165 -4.7920 40 1 4.0548 -0.5086 -5.3210 41 1 5.7081 -1.0369 -3.5744 42 1 5.4244 -0.1401 -1.2989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880461260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:48 Heat of formation + Delta-G solvation = -46.135284 kcal Electronic energy + Delta-G solvation = -24243.596682 eV Core-core repulsion = 20803.014235 eV Total energy + Delta-G solvation = -3440.582448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.92612 -38.51712 -36.81423 -35.58806 -33.87784 -32.05632 -31.36529 -30.59108 -30.23950 -27.72577 -26.48342 -24.52650 -22.64890 -22.23418 -21.41995 -20.07354 -18.95193 -17.79134 -17.28931 -16.66858 -16.14290 -15.82195 -15.06969 -14.72228 -14.53105 -14.42608 -14.05205 -13.71848 -13.68472 -13.40564 -13.07566 -12.85601 -12.47907 -12.31154 -12.00667 -11.85080 -11.63354 -11.42836 -11.26769 -10.99998 -10.85834 -10.73384 -10.49903 -10.34199 -10.28703 -10.26579 -9.67271 -9.49214 -9.17419 -8.63761 -8.39491 -8.03243 -7.38160 -6.48887 -3.90528 1.60609 1.70654 3.13533 3.20843 3.24798 3.78279 4.02477 4.11550 4.33521 4.59010 4.93340 5.07287 5.17094 5.19178 5.20135 5.38969 5.46666 5.51889 5.69824 5.72720 5.77625 5.80521 5.87984 5.97534 5.99353 6.14099 6.15949 6.24819 6.30204 6.40529 6.45766 6.51317 6.70725 6.75360 6.78496 7.00182 7.28415 7.47307 7.47606 7.53100 7.88179 7.97453 8.51834 9.09048 9.45478 9.95727 10.67372 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023201 B = 0.004052 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.572654 B = 6909.123681 C = 7040.113257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.033 3.967 3 N -0.494 5.494 4 C 0.035 3.965 5 C 0.406 3.594 6 O -0.596 6.596 7 N -0.555 5.555 8 C -0.304 4.304 9 H 0.102 0.898 10 C 0.025 3.975 11 N -0.898 5.898 12 Si 0.930 3.070 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.105 3.895 17 H 0.106 0.894 18 C 0.086 3.914 19 O -0.555 6.555 20 C -0.061 4.061 21 C -0.070 4.070 22 C -0.135 4.135 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.118 4.118 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.393 0.607 34 H 0.273 0.727 35 H 0.043 0.957 36 H 0.051 0.949 37 H 0.367 0.633 38 H 0.133 0.867 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 1.235 -15.254 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 N -0.217 5.217 4 C -0.097 4.097 5 C 0.191 3.809 6 O -0.483 6.483 7 N -0.190 5.190 8 C -0.434 4.434 9 H 0.120 0.880 10 C -0.177 4.177 11 N -0.538 5.538 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.199 1.199 16 C -0.003 4.003 17 H 0.123 0.877 18 C 0.008 3.992 19 O -0.358 6.358 20 C -0.061 4.061 21 C -0.088 4.088 22 C -0.153 4.153 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.137 4.137 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.226 0.774 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.212 0.788 38 H 0.151 0.849 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.407 0.393 -15.712 15.723 hybrid contribution 0.847 0.117 1.709 1.911 sum 1.254 0.510 -14.004 14.069 Atomic orbital electron populations 1.21741 0.95853 1.00751 1.01636 1.22283 0.94915 0.89576 1.02662 1.62476 1.16095 1.17631 1.25518 1.22168 1.01020 0.98809 0.87655 1.21134 0.87411 0.88000 0.84310 1.90393 1.43012 1.33669 1.81251 1.42066 1.40415 1.31605 1.04890 1.19666 1.23239 1.14817 0.85640 0.88015 1.25281 0.97249 0.96780 0.98390 1.69600 1.36884 1.28146 1.19199 0.85933 0.79695 0.79526 0.79173 1.19888 1.20889 1.19867 1.21032 0.91317 0.94401 0.93518 0.87661 1.22264 0.94150 0.91379 0.91440 1.86613 1.65972 1.23808 1.59450 1.19731 0.94593 0.96456 0.95322 1.21100 0.98854 0.97346 0.91522 1.21161 0.98134 0.99044 0.97011 1.21041 0.95410 0.99487 0.98835 1.20989 0.99454 1.00968 0.93435 1.21094 0.98118 0.97775 0.96709 0.92798 0.93040 0.92870 0.91640 0.91276 0.89139 0.89202 0.77383 0.91682 0.93891 0.93077 0.78816 0.84920 0.86770 0.86928 0.86712 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 10.04 37.16 0.37 -1.74 16 2 C 0.03 0.57 5.06 -3.83 -0.02 0.55 16 3 N -0.49 -8.31 3.75 -229.48 -0.86 -9.17 16 4 C 0.04 0.62 5.27 -4.98 -0.03 0.60 16 5 C 0.41 9.05 7.01 -10.99 -0.08 8.98 16 6 O -0.60 -14.80 11.32 5.55 0.06 -14.74 16 7 N -0.55 -13.58 5.29 -10.96 -0.06 -13.63 16 8 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 9 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 10 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 11 N -0.90 -23.91 13.05 55.50 0.72 -23.19 16 12 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 C 0.11 1.77 1.71 -68.86 -0.12 1.65 16 17 H 0.11 2.10 5.40 -51.93 -0.28 1.82 16 18 C 0.09 1.27 6.26 37.16 0.23 1.50 16 19 O -0.55 -7.40 12.11 -35.23 -0.43 -7.83 16 20 C -0.06 -0.94 3.44 -104.62 -0.36 -1.30 16 21 C -0.07 -1.03 7.73 -39.58 -0.31 -1.33 16 22 C -0.14 -1.75 10.05 -39.58 -0.40 -2.14 16 23 C -0.13 -1.59 10.05 -39.58 -0.40 -1.98 16 24 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 25 C -0.12 -1.74 9.67 -39.58 -0.38 -2.12 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.80 6.58 -51.93 -0.34 0.46 16 29 H 0.07 1.12 6.34 -51.92 -0.33 0.79 16 30 H 0.07 1.43 5.50 -51.93 -0.29 1.15 16 31 H 0.09 1.49 5.97 -51.93 -0.31 1.18 16 32 H 0.09 1.50 6.58 -51.93 -0.34 1.16 16 33 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.78 6.07 -51.93 -0.32 0.47 16 37 H 0.37 3.27 9.12 45.56 0.42 3.69 16 38 H 0.13 2.04 7.48 -52.49 -0.39 1.65 16 39 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.12 1.67 8.04 -52.48 -0.42 1.25 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -29.81 336.92 -7.59 -37.40 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -4.97 Total: 17.68 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.12 Total: -7.23 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.19 Total: -45.99 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.36 Total: -22.57 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.81 -7.59 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880461260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.733 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds