Wall clock time and date at job start Tue Mar 31 2020 03:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47244 * 2 1 4 4 C 1.46895 * 111.00133 * 71.93921 * 3 2 1 5 5 C 1.50701 * 109.47246 * 60.97649 * 4 3 2 6 6 O 1.21283 * 119.99973 * 5.64066 * 5 4 3 7 7 N 1.34777 * 119.99890 * 185.63610 * 5 4 3 8 8 C 1.37099 * 119.99741 * 180.02562 * 7 5 4 9 9 H 1.07999 * 119.99829 * 0.02562 * 8 7 5 10 10 C 1.38954 * 120.00071 * 180.02562 * 8 7 5 11 11 N 1.31406 * 119.99662 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00246 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46868 * 59.99115 * 12 10 8 14 14 H 1.48496 * 109.47452 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47053 * 299.99594 * 12 10 8 16 16 C 1.46898 * 111.00076 * 195.89174 * 3 2 1 17 17 H 1.08996 * 109.47398 * 301.14700 * 16 3 2 18 18 C 1.53001 * 109.47197 * 181.14629 * 16 3 2 19 19 O 1.42905 * 109.47508 * 296.49164 * 18 16 3 20 20 C 1.50704 * 109.47003 * 61.15002 * 16 3 2 21 21 C 1.38236 * 120.00021 * 39.72690 * 20 16 3 22 22 C 1.38234 * 119.99593 * 179.78697 * 21 20 16 23 23 C 1.38239 * 120.00451 * 0.44086 * 22 21 20 24 24 C 1.38234 * 119.99439 * 359.81346 * 23 22 21 25 25 C 1.38234 * 119.99889 * 219.99599 * 20 16 3 26 26 H 1.08996 * 109.47102 * 64.80338 * 1 2 3 27 27 H 1.09000 * 109.46980 * 184.80804 * 1 2 3 28 28 H 1.08995 * 109.46663 * 304.80228 * 1 2 3 29 29 H 1.09009 * 109.46798 * 240.00031 * 2 1 3 30 30 H 1.08996 * 109.47184 * 120.00376 * 2 1 3 31 31 H 1.09002 * 109.47510 * 180.97866 * 4 3 2 32 32 H 1.09003 * 109.47014 * 300.97914 * 4 3 2 33 33 H 0.96999 * 120.00100 * 0.02562 * 7 5 4 34 34 H 0.97001 * 119.99733 * 180.02562 * 11 10 8 35 35 H 1.09004 * 109.47462 * 176.49153 * 18 16 3 36 36 H 1.09002 * 109.47224 * 56.49549 * 18 16 3 37 37 H 0.96696 * 113.99764 * 179.97438 * 19 18 16 38 38 H 1.07992 * 119.99930 * 359.97438 * 21 20 16 39 39 H 1.08001 * 119.99828 * 180.26988 * 22 21 20 40 40 H 1.07994 * 120.00260 * 179.82843 * 23 22 21 41 41 H 1.08005 * 119.99925 * 180.02562 * 24 23 22 42 42 H 1.08004 * 120.00286 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7943 2.0230 1.3038 5 6 2.5442 1.2663 2.3697 6 8 3.2823 0.3549 2.0608 7 7 2.3945 1.6024 3.6663 8 6 3.0771 0.9143 4.6360 9 1 3.7349 0.1032 4.3608 10 6 2.9225 1.2605 5.9728 11 7 2.1224 2.2477 6.3075 12 14 3.8530 0.3234 7.2939 13 1 5.3132 0.4520 7.0564 14 1 3.5175 0.8837 8.6276 15 1 3.4684 -1.1102 7.2479 16 6 3.4387 1.4416 -0.3755 17 1 4.0241 0.8464 0.3253 18 6 3.9190 2.8937 -0.3366 19 8 3.2080 3.6571 -1.3133 20 6 3.6121 0.8923 -1.7682 21 6 2.6812 1.1847 -2.7473 22 6 2.8426 0.6845 -4.0258 23 6 3.9301 -0.1156 -4.3229 24 6 4.8582 -0.4122 -3.3423 25 6 4.6991 0.0916 -2.0649 26 1 -0.3633 0.4375 -0.9298 27 1 -0.3633 -1.0241 0.0861 28 1 -0.3632 0.5865 0.8438 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.1503 3.0528 1.2708 32 1 0.7288 2.0141 1.5334 33 1 1.8040 2.3312 3.9134 34 1 2.0148 2.4896 7.2407 35 1 4.9865 2.9294 -0.5544 36 1 3.7362 3.3105 0.6539 37 1 3.4616 4.5897 -1.3445 38 1 1.8295 1.8064 -2.5142 39 1 2.1177 0.9165 -4.7920 40 1 4.0548 -0.5086 -5.3210 41 1 5.7081 -1.0369 -3.5744 42 1 5.4244 -0.1401 -1.2989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880461260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:48 Heat of formation + Delta-G solvation = -67.447127 kcal Electronic energy + Delta-G solvation = -24244.520833 eV Core-core repulsion = 20803.014235 eV Total energy + Delta-G solvation = -3441.506598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34217 -39.91932 -38.14722 -36.91338 -35.78405 -33.39959 -33.16680 -31.64172 -31.56718 -29.06567 -27.90843 -26.33276 -23.82365 -23.31883 -22.81105 -21.47404 -20.65418 -19.68523 -18.42095 -17.90462 -17.73111 -17.12028 -16.57302 -16.37005 -15.85346 -15.77416 -15.51673 -15.29974 -14.97521 -14.88355 -14.26438 -14.11604 -13.80945 -13.55855 -13.47983 -13.14963 -13.05316 -13.04286 -12.79041 -12.47966 -12.43460 -12.14820 -12.09883 -11.81110 -11.70376 -11.50049 -11.33224 -10.94040 -10.78540 -10.01494 -9.69106 -9.46981 -8.98686 -8.47284 -5.97531 0.54482 0.65326 1.35946 1.39149 1.49500 1.99055 2.27217 2.86180 3.07159 3.18064 3.24256 3.49600 3.85047 4.10606 4.16705 4.22056 4.26542 4.35002 4.41125 4.46894 4.49240 4.53924 4.57914 4.71039 4.78164 4.80187 4.85968 5.02389 5.07602 5.14935 5.20174 5.33681 5.36962 5.41924 5.66510 5.73753 5.83953 5.92330 6.10020 6.18587 6.25654 6.56713 7.00510 7.09641 7.52915 8.07400 8.67603 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023201 B = 0.004052 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.572654 B = 6909.123681 C = 7040.113257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.039 3.961 3 N -0.480 5.480 4 C 0.045 3.955 5 C 0.410 3.590 6 O -0.621 6.621 7 N -0.568 5.568 8 C -0.334 4.334 9 H 0.078 0.922 10 C -0.010 4.010 11 N -0.918 5.918 12 Si 0.990 3.010 13 H -0.272 1.272 14 H -0.270 1.270 15 H -0.273 1.273 16 C 0.104 3.896 17 H 0.067 0.933 18 C 0.094 3.906 19 O -0.559 6.559 20 C -0.075 4.075 21 C -0.079 4.079 22 C -0.134 4.134 23 C -0.126 4.126 24 C -0.131 4.131 25 C -0.139 4.139 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.395 0.605 34 H 0.278 0.722 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.388 0.612 38 H 0.125 0.875 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 1.523 -17.022 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 N -0.202 5.202 4 C -0.087 4.087 5 C 0.198 3.802 6 O -0.509 6.509 7 N -0.204 5.204 8 C -0.464 4.464 9 H 0.096 0.904 10 C -0.210 4.210 11 N -0.558 5.558 12 Si 0.813 3.187 13 H -0.197 1.197 14 H -0.195 1.195 15 H -0.199 1.199 16 C -0.004 4.004 17 H 0.085 0.915 18 C 0.016 3.984 19 O -0.366 6.366 20 C -0.076 4.076 21 C -0.097 4.097 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.158 4.158 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.229 0.771 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.236 0.764 38 H 0.143 0.857 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.035 0.706 -17.500 17.515 hybrid contribution 1.012 0.009 2.104 2.335 sum 0.977 0.715 -15.396 15.444 Atomic orbital electron populations 1.21694 0.93640 1.01610 1.02325 1.22200 0.96659 0.89388 1.00662 1.62586 1.16271 1.17160 1.24166 1.22226 1.01222 0.98965 0.86266 1.22050 0.86422 0.87290 0.84482 1.90406 1.43935 1.34829 1.81747 1.42122 1.40987 1.32006 1.05295 1.19606 1.24343 1.15368 0.87042 0.90412 1.26001 0.97826 0.97465 0.99703 1.69661 1.37487 1.28828 1.19844 0.85041 0.78401 0.78199 0.77024 1.19732 1.19469 1.19878 1.20913 0.90376 0.95355 0.93761 0.91550 1.22045 0.94556 0.90469 0.91374 1.86556 1.65842 1.25467 1.58704 1.19647 0.95627 0.97563 0.94730 1.21051 0.98453 0.97939 0.92253 1.21471 0.98758 0.98288 0.96698 1.21422 0.94471 0.98509 1.00004 1.21285 1.00348 1.00595 0.92660 1.21190 0.98194 0.98658 0.97730 0.91102 0.92017 0.93213 0.91653 0.95270 0.87333 0.87542 0.77087 0.91252 0.93226 0.93935 0.76374 0.85682 0.84245 0.83779 0.84502 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 10.04 71.98 0.72 -3.14 16 2 C 0.04 1.35 5.06 86.30 0.44 1.79 16 3 N -0.48 -16.11 3.75 -879.93 -3.30 -19.41 16 4 C 0.04 1.59 5.27 85.56 0.45 2.04 16 5 C 0.41 18.91 7.01 87.66 0.61 19.53 16 6 O -0.62 -32.43 11.32 -3.04 -0.03 -32.46 16 7 N -0.57 -28.63 5.29 -306.99 -1.62 -30.26 16 8 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 9 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 10 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 11 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 12 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 C 0.10 3.57 1.71 44.17 0.08 3.64 16 17 H 0.07 2.82 5.40 -2.39 -0.01 2.80 16 18 C 0.09 2.76 6.26 71.98 0.45 3.21 16 19 O -0.56 -14.10 12.11 -148.98 -1.80 -15.90 16 20 C -0.08 -2.33 3.44 -19.86 -0.07 -2.40 16 21 C -0.08 -2.20 7.73 22.27 0.17 -2.02 16 22 C -0.13 -3.09 10.05 22.27 0.22 -2.86 16 23 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 24 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 25 C -0.14 -4.09 9.67 22.27 0.22 -3.88 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.44 6.58 -2.39 -0.02 1.43 16 29 H 0.07 2.27 6.34 -2.38 -0.02 2.25 16 30 H 0.03 1.26 5.50 -2.39 -0.01 1.25 16 31 H 0.11 3.50 5.97 -2.39 -0.01 3.48 16 32 H 0.11 3.45 6.58 -2.39 -0.02 3.44 16 33 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 34 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.30 6.07 -2.39 -0.01 1.29 16 37 H 0.39 6.14 9.12 -74.06 -0.68 5.46 16 38 H 0.13 3.65 7.48 -2.91 -0.02 3.63 16 39 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.11 3.26 8.04 -2.91 -0.02 3.24 16 Total: -1.00 -65.52 336.92 0.22 -65.30 By element: Atomic # 1 Polarization: 44.58 SS G_CDS: -0.35 Total: 44.23 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 5.02 Total: -7.37 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -4.64 Total: -98.45 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -1.84 Total: -48.36 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -65.52 0.22 -65.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880461260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.143 kcal (2) G-P(sol) polarization free energy of solvation -65.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds