Wall clock time and date at job start Tue Mar 31 2020 03:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00369 * 2 1 4 4 H 1.48493 * 109.47471 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46731 * 300.00094 * 3 2 1 6 6 H 1.48496 * 109.46914 * 59.99502 * 3 2 1 7 7 C 1.38820 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99740 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99898 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47068 * 179.97438 * 10 9 7 12 12 C 1.35359 * 126.74961 * 95.00162 * 11 10 9 13 13 N 1.35312 * 106.17441 * 180.24929 * 12 11 10 14 14 C 1.46500 * 125.86582 * 179.77310 * 13 12 11 15 15 C 1.53005 * 109.47040 * 124.99824 * 14 13 12 16 16 H 1.08998 * 110.24636 * 55.55305 * 15 14 13 17 17 C 1.55186 * 110.27723 * 177.66418 * 15 14 13 18 18 C 1.54018 * 100.75578 * 154.08116 * 17 15 14 19 19 C 1.52407 * 115.92187 * 96.36405 * 18 17 15 20 20 C 1.54039 * 86.64143 * 93.64065 * 19 18 17 21 21 C 1.52396 * 115.93321 * 198.17710 * 18 17 15 22 22 C 1.53081 * 103.78939 * 327.28643 * 18 17 15 23 23 O 1.43601 * 107.17284 * 19.97168 * 22 18 17 24 24 N 1.28713 * 108.26446 * 359.62122 * 13 12 11 25 25 N 1.28640 * 110.17981 * 0.39068 * 24 13 12 26 26 H 0.96994 * 119.99837 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00307 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47254 * 59.99866 * 10 9 7 29 29 H 1.08996 * 109.47228 * 299.99403 * 10 9 7 30 30 H 1.08002 * 126.90931 * 359.97438 * 12 11 10 31 31 H 1.08994 * 109.46942 * 244.99531 * 14 13 12 32 32 H 1.08995 * 109.47514 * 4.99585 * 14 13 12 33 33 H 1.08999 * 111.15839 * 271.95501 * 17 15 14 34 34 H 1.08999 * 111.15904 * 36.21274 * 17 15 14 35 35 H 1.08991 * 113.68419 * 208.07616 * 19 18 17 36 36 H 1.09002 * 113.68588 * 339.20888 * 19 18 17 37 37 H 1.08999 * 113.56992 * 269.77970 * 20 19 18 38 38 H 1.08997 * 113.63854 * 139.02194 * 20 19 18 39 39 H 1.08996 * 113.68366 * 20.81205 * 21 18 17 40 40 H 1.09002 * 113.68018 * 151.83662 * 21 18 17 41 41 H 1.08996 * 109.89746 * 260.57835 * 22 18 17 42 42 H 1.08998 * 109.89802 * 139.35823 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0788 -4.8022 0.0012 12 6 0.6239 -5.4795 -1.0789 13 7 -0.2349 -6.4116 -0.6052 14 6 -0.9801 -7.3811 -1.4120 15 6 -0.6921 -8.7955 -0.9045 16 1 -0.9224 -8.8690 0.1584 17 6 -1.5182 -9.8342 -1.7089 18 6 -0.6361 -11.0869 -1.5517 19 6 -1.0328 -12.0452 -0.4349 20 6 -1.8423 -12.8083 -1.5003 21 6 -0.8884 -12.2094 -2.5512 22 6 0.7874 -10.5264 -1.4978 23 8 0.6837 -9.1393 -1.1411 24 7 -0.2822 -6.3022 0.6764 25 7 0.4876 -5.3494 1.0692 26 1 -0.4849 0.8400 0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.6848 -3.7146 0.8905 29 1 2.6846 -3.7146 -0.8895 30 1 0.8894 -5.3072 -2.1116 31 1 -2.0476 -7.1766 -1.3315 32 1 -0.6721 -7.2995 -2.4544 33 1 -2.5008 -9.9863 -1.2623 34 1 -1.6046 -9.5427 -2.7556 35 1 -0.1967 -12.6147 -0.0292 36 1 -1.6495 -11.5859 0.3377 37 1 -2.8709 -12.4613 -1.5975 38 1 -1.7683 -13.8922 -1.4120 39 1 -1.3902 -11.8806 -3.4612 40 1 -0.0108 -12.8246 -2.7493 41 1 1.2617 -10.6240 -2.4743 42 1 1.3681 -11.0605 -0.7457 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881395093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:44 Heat of formation + Delta-G solvation = 88.341210 kcal Electronic energy + Delta-G solvation = -22839.198585 eV Core-core repulsion = 19436.740227 eV Total energy + Delta-G solvation = -3402.458358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.80618 -41.06127 -37.60774 -35.18353 -34.20270 -31.78684 -31.35181 -29.81948 -29.35690 -26.71556 -26.31690 -25.66361 -22.91745 -22.82781 -22.42040 -21.33963 -20.27284 -19.04187 -17.50933 -17.14387 -16.66946 -16.43062 -15.80771 -15.48870 -15.20753 -14.56296 -14.42522 -14.25992 -13.76881 -13.54295 -13.36750 -13.10415 -12.83260 -12.71789 -12.49867 -12.33182 -12.03871 -11.69560 -11.61125 -11.14557 -10.96392 -10.83223 -10.77999 -10.76194 -10.70301 -10.32170 -10.01392 -9.95285 -9.74411 -9.55726 -8.82366 -8.68465 -6.84618 -5.68218 -2.97195 2.00043 2.52422 3.06403 3.32725 3.49458 3.54869 3.57454 3.75903 3.85251 4.04073 4.28331 4.35250 4.50746 4.56012 4.67368 4.68578 4.81013 4.87475 4.99311 5.03691 5.17211 5.20885 5.26647 5.31023 5.37786 5.42109 5.44611 5.50512 5.57678 5.62497 5.73240 5.73696 5.85927 5.99926 6.26131 6.53404 6.59537 6.78469 6.87524 6.94329 7.77455 8.49344 8.99228 9.61007 10.17885 10.54125 11.54832 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.052469 B = 0.002492 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.522487 B =11231.259209 C =11313.265830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.074 0.926 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.008 4.008 12 C -0.037 4.037 13 N -0.293 5.293 14 C 0.121 3.879 15 C 0.072 3.928 16 H 0.090 0.910 17 C -0.125 4.125 18 C -0.117 4.117 19 C -0.128 4.128 20 C -0.140 4.140 21 C -0.124 4.124 22 C 0.065 3.935 23 O -0.372 6.372 24 N -0.097 5.097 25 N -0.255 5.255 26 H 0.254 0.746 27 H 0.385 0.615 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.186 0.814 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 -28.866 -8.279 30.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.092 0.908 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.146 4.146 12 C -0.188 4.188 13 N -0.087 5.087 14 C -0.002 4.002 15 C 0.013 3.987 16 H 0.108 0.892 17 C -0.163 4.163 18 C -0.118 4.118 19 C -0.165 4.165 20 C -0.178 4.178 21 C -0.161 4.161 22 C -0.011 4.011 23 O -0.291 6.291 24 N -0.076 5.076 25 N -0.122 5.122 26 H 0.064 0.936 27 H 0.219 0.781 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.203 0.797 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.854 -29.163 -6.968 30.374 hybrid contribution 0.306 1.101 -1.165 1.632 sum -4.548 -28.062 -8.132 29.569 Atomic orbital electron populations 1.69695 1.05164 1.25434 1.57875 1.24764 0.95532 0.97708 1.03142 0.86080 0.78777 0.84035 0.77095 1.20474 1.21977 1.21899 1.19295 0.91136 0.83860 1.42433 0.90836 1.42329 1.05994 0.99317 1.89447 1.18928 0.90085 0.81381 0.99173 1.22410 1.02775 1.00926 0.88485 1.23353 0.98488 0.94982 1.01956 1.47054 1.30479 1.24490 1.06663 1.22212 0.97230 0.85750 0.94967 1.23327 0.82612 0.92251 1.00484 0.89182 1.22927 0.99042 0.92822 1.01520 1.22455 0.95383 0.94875 0.99040 1.22822 1.00387 0.97135 0.96163 1.22904 0.98617 1.00065 0.96172 1.22708 1.00031 0.96415 0.96959 1.22994 0.95687 0.81912 1.00542 1.88598 1.24630 1.25860 1.90056 1.78165 1.20088 1.16956 0.92435 1.75063 1.06786 1.04049 1.26329 0.93631 0.78133 0.94388 0.94519 0.79680 0.87240 0.87265 0.89050 0.89419 0.89558 0.90833 0.90012 0.91209 0.90872 0.89608 0.90871 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.06 55.49 0.72 -28.63 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.73 -19.72 5.59 -61.08 -0.34 -20.07 16 10 C 0.23 5.20 6.82 -5.19 -0.04 5.17 16 11 C -0.01 -0.16 6.62 -82.77 -0.55 -0.71 16 12 C -0.04 -0.62 11.50 -17.04 -0.20 -0.81 16 13 N -0.29 -4.51 3.42 -61.26 -0.21 -4.72 16 14 C 0.12 1.18 6.16 -4.04 -0.02 1.15 16 15 C 0.07 0.67 3.52 -25.57 -0.09 0.58 16 16 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 17 C -0.13 -0.74 5.77 -25.04 -0.14 -0.89 16 18 C -0.12 -0.72 0.94 -154.58 -0.15 -0.86 16 19 C -0.13 -0.73 7.32 -26.49 -0.19 -0.92 16 20 C -0.14 -0.64 7.97 -25.68 -0.20 -0.85 16 21 C -0.12 -0.58 7.41 -26.50 -0.20 -0.78 16 22 C 0.07 0.53 7.31 37.20 0.27 0.80 16 23 O -0.37 -4.32 11.04 -35.23 -0.39 -4.71 16 24 N -0.10 -1.84 12.85 60.35 0.78 -1.06 16 25 N -0.25 -5.56 12.41 33.29 0.41 -5.15 16 26 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.39 11.25 7.66 -40.82 -0.31 10.93 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.19 2.45 8.06 -52.49 -0.42 2.03 16 31 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.11 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.09 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.09 0.42 8.04 -51.93 -0.42 0.00 16 35 H 0.09 0.48 8.02 -51.93 -0.42 0.06 16 36 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 42 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -36.01 349.22 -7.12 -43.13 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.58 Total: 3.67 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.75 Total: -5.68 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 1.36 Total: -59.63 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.39 Total: -4.71 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.01 -7.12 -43.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881395093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.471 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds